PDB Chemical Component U25 (obsoleted)

Ideal Model

Chemical Description

Name URIDINE-5'-MONOPHOSPHATE
Formula C9 H13 N2 O9 P
Formal charge 0
Molecular weight 324.181 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-uridylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1/f/h10,16-17H
InChIKey descriptor DJJCXFVJDGTHFX-UUVCVCPKDX

Status Information

Last modified 2009-01-07
Created 2002-08-23
Release status OBS
Replaced by U5P
Model PDB code 2F8E
Processing site RCSB