PDB Chemical Component XYP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XYP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.412	1.428
O1	HO1	0.950	0.966
C1	C2	1.547	1.530
C1	O5	1.419	1.426
C1	H1	1.115	1.089
C2	C3	1.526	1.532
C2	O2	1.408	1.428
C2	H2	1.116	1.090
C3	C4	1.550	1.533
C3	O3	1.394	1.428
C3	H3	1.115	1.091
C4	C5	1.541	1.530
C4	O4	1.438	1.429
C4	H4	1.115	1.090
C5	O5	1.403	1.425
C5	H51	1.115	1.090
C5	H52	1.115	1.090
O2	HO2	0.949	0.968
O3	HO3	0.949	0.967
O4	HO4	0.949	0.966

Bond Angles for XYP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	HO1	106.4	106.9
O1	C1	C2	106.4	109.4
O1	C1	O5	104.7	109.4
O1	C1	H1	112.4	109.4
C2	C1	O5	102.9	109.8
C2	C1	H1	114.0	109.4
C1	C2	C3	104.4	109.1
C1	C2	O2	110.4	109.6
C1	C2	H2	112.5	109.5
O5	C1	H1	115.5	109.4
C1	O5	C5	115.0	107.7
C3	C2	O2	110.5	109.7
C3	C2	H2	112.4	109.4
C2	C3	C4	109.2	108.7
C2	C3	O3	109.4	109.7
C2	C3	H3	110.8	109.5
O2	C2	H2	106.7	109.5
C2	O2	HO2	110.4	106.8
C4	C3	O3	112.8	109.9
C4	C3	H3	107.4	109.4
C3	C4	C5	109.4	109.1
C3	C4	O4	101.0	109.6
C3	C4	H4	114.3	109.5
O3	C3	H3	107.2	109.6
C3	O3	HO3	109.5	106.9
C5	C4	O4	107.6	109.6
C5	C4	H4	108.3	109.5
C4	C5	O5	113.7	109.8
C4	C5	H51	110.7	109.4
C4	C5	H52	110.7	109.4
O4	C4	H4	115.9	109.5
C4	O4	HO4	100.9	106.8
O5	C5	H51	110.7	109.4
O5	C5	H52	110.6	109.5
H51	C5	H52	99.6	109.3

Torsion Angles for XYP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	O5	251.5	239.7
C2	C1	O1	H1	125.4	119.8
O1	C1	C2	C3	181.9	181.2
O1	C1	C2	O2	300.7	301.3
O1	C1	C2	H2	59.7	61.5
O5	C1	O1	H1	233.9	240.1
O1	C1	O5	C5	179.9	172.3
HO1	O1	C1	C2	180.0	179.7
HO1	O1	C1	O5	288.5	300.1
HO1	O1	C1	H1	54.6	59.9
C2	C1	O1	HO1	180.0	179.7
O1	C1	C2	O5	109.7	120.1
O1	C1	C2	H1	235.6	240.2
O5	C1	C2	H1	125.8	120.1
C2	C1	O5	C5	291.0	292.4
C3	C2	C1	O2	241.3	239.9
C3	C2	C1	H2	122.2	119.7
C1	C2	C3	C4	294.3	306.5
C1	C2	C3	O3	170.4	186.3
C1	C2	C3	H3	52.4	66.0
O2	C2	C1	H2	241.0	239.8
C1	C2	O2	HO2	180.0	60.0
O5	C1	O1	HO1	288.5	300.1
O1	C1	O5	C2	248.9	239.9
O1	C1	O5	H1	124.1	119.8
C2	C1	O5	H1	235.2	240.0
O5	C1	C2	C3	72.2	61.1
O5	C1	C2	O2	190.9	181.2
O5	C1	C2	H2	309.9	301.4
C4	C5	O5	C1	55.4	67.6
C1	O5	C5	H51	290.1	307.5
C1	O5	C5	H52	180.6	187.7
H1	C1	O1	HO1	54.6	59.9
O1	C1	H1	C2	121.2	119.8
O1	C1	H1	O5	240.0	240.1
C2	C1	H1	O5	118.8	120.3
H1	C1	C2	C3	306.3	301.1
H1	C1	C2	O2	65.1	61.2
H1	C1	C2	H2	184.1	181.3
H1	C1	O5	C5	55.8	52.5
C3	C2	C1	O5	72.2	61.1
C3	C2	C1	H1	306.3	301.1
C1	C2	C3	O2	118.7	120.0
C1	C2	C3	H2	237.7	240.2
O2	C2	C3	H2	119.1	120.2
C3	C2	O2	HO2	294.9	179.7
C4	C3	C2	O3	123.9	120.2
C4	C3	C2	H3	241.9	240.5
C2	C3	C4	C5	49.9	53.5
C2	C3	C4	O4	163.1	173.5
C2	C3	C4	H4	288.3	293.6
O3	C3	C2	H3	118.0	120.3
C2	C3	O3	HO3	180.0	180.0
O2	C2	C1	O5	190.9	181.2
O2	C2	C1	H1	65.1	61.2
C1	C2	O2	C3	245.0	240.2
C1	C2	O2	H2	122.5	120.2
C3	C2	O2	H2	237.5	239.9
O2	C2	C3	C4	175.6	186.5
O2	C2	C3	O3	51.7	66.3
O2	C2	C3	H3	293.7	306.0
H2	C2	C1	O5	309.9	301.4
H2	C2	C1	H1	184.1	181.3
C1	C2	H2	C3	117.6	119.6
C1	C2	H2	O2	238.9	239.8
C3	C2	H2	O2	121.3	120.2
H2	C2	C3	C4	56.5	66.3
H2	C2	C3	O3	292.6	306.2
H2	C2	C3	H3	174.7	185.9
H2	C2	O2	HO2	57.4	299.8
C4	C3	C2	O2	175.6	186.5
C4	C3	C2	H2	56.5	66.3
C2	C3	C4	O3	238.1	240.0
C2	C3	C4	H3	120.2	119.6
O3	C3	C4	H3	242.1	239.6
C4	C3	O3	HO3	58.3	60.6
C5	C4	C3	O4	246.8	240.0
C5	C4	C3	H4	121.6	119.9
C3	C4	C5	O5	317.5	298.9
C3	C4	C5	H51	82.8	59.0
C3	C4	C5	H52	192.3	178.7
O4	C4	C3	H4	234.8	239.9
C3	C4	O4	HO4	180.0	180.2
O3	C3	C2	O2	51.7	66.3
O3	C3	C2	H2	292.6	306.2
C2	C3	O3	C4	121.8	119.4
C2	C3	O3	H3	239.8	239.7
C4	C3	O3	H3	118.0	120.3
O3	C3	C4	C5	171.8	173.5
O3	C3	C4	O4	285.0	293.5
O3	C3	C4	H4	50.2	53.6
H3	C3	C2	O2	293.7	306.0
H3	C3	C2	H2	174.7	185.9
C2	C3	H3	C4	240.8	240.9
C2	C3	H3	O3	119.3	120.3
C4	C3	H3	O3	238.5	239.4
H3	C3	C4	C5	289.7	293.9
H3	C3	C4	O4	42.9	53.9
H3	C3	C4	H4	168.1	174.0
H3	C3	O3	HO3	300.2	300.3
C1	O5	C5	C4	55.4	67.6
C5	C4	C3	O3	171.8	173.5
C5	C4	C3	H3	289.7	293.9
C3	C4	C5	O4	108.9	120.0
C3	C4	C5	H4	234.9	240.2
O4	C4	C5	H4	126.0	120.2
C5	C4	O4	HO4	294.6	299.9
O5	C5	C4	H51	234.7	239.9
O5	C5	C4	H52	125.2	120.2
H51	C5	C4	H52	250.5	240.3
O4	C4	C3	O3	285.0	293.5
O4	C4	C3	H3	42.9	53.9
C3	C4	O4	C5	245.4	240.3
C3	C4	O4	H4	124.0	120.1
C5	C4	O4	H4	238.6	239.8
O4	C4	C5	O5	208.7	178.9
O4	C4	C5	H51	333.9	299.0
O4	C4	C5	H52	83.4	58.7
H4	C4	C3	O3	50.2	53.6
H4	C4	C3	H3	168.1	174.0
C3	C4	H4	C5	122.2	119.6
C3	C4	H4	O4	243.2	239.8
C5	C4	H4	O4	121.0	120.2
H4	C4	C5	O5	82.6	58.7
H4	C4	C5	H51	207.9	178.8
H4	C4	C5	H52	317.4	298.5
H4	C4	O4	HO4	56.0	60.1
C5	O5	C1	H1	55.8	52.5
O5	C5	C4	O4	208.7	178.9
O5	C5	C4	H4	82.6	58.7
C4	C5	O5	H51	125.3	120.1
C4	C5	O5	H52	234.7	239.8
H51	C5	O5	H52	109.5	119.8
H51	C5	C4	O4	333.9	299.0
H51	C5	C4	H4	207.9	178.8
C4	C5	H51	O5	233.1	239.6
C4	C5	H51	H52	116.6	119.8
O5	C5	H51	H52	243.5	240.1
H52	C5	C4	O4	83.4	58.7
H52	C5	C4	H4	317.4	298.5
C4	C5	H52	O5	126.9	120.4
C4	C5	H52	H51	243.4	240.2
O5	C5	H52	H51	116.5	119.8
HO2	O2	C2	H2	57.4	299.8
HO3	O3	C3	H3	300.2	300.3
HO4	O4	C4	H4	56.0	60.1