PDB Chemical Component XUL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XUL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.608 |
1.506 |
C1 |
O1 |
1.455 |
1.428 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.115 |
1.090 |
C2 |
C3 |
1.515 |
1.506 |
C2 |
O2 |
1.260 |
1.207 |
C3 |
C4 |
1.527 |
1.529 |
C3 |
O3 |
1.439 |
1.430 |
C3 |
H3 |
1.116 |
1.090 |
C4 |
C5 |
1.546 |
1.529 |
C4 |
O4 |
1.402 |
1.429 |
C4 |
H4 |
1.115 |
1.090 |
C5 |
O5 |
1.438 |
1.429 |
C5 |
H51 |
1.115 |
1.089 |
C5 |
H52 |
1.115 |
1.090 |
O1 |
HO1 |
0.950 |
0.967 |
O3 |
HO3 |
0.951 |
0.965 |
O4 |
HO4 |
0.951 |
0.967 |
O5 |
HO5 |
0.950 |
0.966 |
Bond Angles for XUL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
104.9 |
109.5 |
C2 |
C1 |
H11 |
113.9 |
109.4 |
C2 |
C1 |
H12 |
113.9 |
109.5 |
C1 |
C2 |
C3 |
115.1 |
120.0 |
C1 |
C2 |
O2 |
123.4 |
120.0 |
O1 |
C1 |
H11 |
114.0 |
109.4 |
O1 |
C1 |
H12 |
113.9 |
109.5 |
C1 |
O1 |
HO1 |
104.9 |
106.9 |
H11 |
C1 |
H12 |
96.5 |
109.5 |
C3 |
C2 |
O2 |
121.1 |
120.0 |
C2 |
C3 |
C4 |
110.5 |
109.5 |
C2 |
C3 |
O3 |
107.9 |
109.5 |
C2 |
C3 |
H3 |
110.2 |
109.5 |
C4 |
C3 |
O3 |
110.5 |
109.4 |
C4 |
C3 |
H3 |
107.5 |
109.4 |
C3 |
C4 |
C5 |
110.2 |
109.6 |
C3 |
C4 |
O4 |
113.6 |
109.5 |
C3 |
C4 |
H4 |
104.3 |
109.5 |
O3 |
C3 |
H3 |
110.2 |
109.5 |
C3 |
O3 |
HO3 |
107.8 |
106.8 |
C5 |
C4 |
O4 |
103.2 |
109.4 |
C5 |
C4 |
H4 |
114.5 |
109.4 |
C4 |
C5 |
O5 |
111.1 |
109.6 |
C4 |
C5 |
H51 |
111.6 |
109.5 |
C4 |
C5 |
H52 |
111.6 |
109.5 |
O4 |
C4 |
H4 |
111.3 |
109.4 |
C4 |
O4 |
HO4 |
113.5 |
106.8 |
O5 |
C5 |
H51 |
111.6 |
109.4 |
O5 |
C5 |
H52 |
111.5 |
109.5 |
C5 |
O5 |
HO5 |
111.1 |
106.9 |
H51 |
C5 |
H52 |
98.8 |
109.4 |
Torsion Angles for XUL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
H11 |
234.7 |
240.1 |
O1 |
C1 |
C2 |
H12 |
125.3 |
120.1 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
H11 |
C1 |
C2 |
H12 |
250.6 |
240.0 |
C3 |
C2 |
C1 |
O2 |
172.9 |
180.1 |
C1 |
C2 |
C3 |
C4 |
219.0 |
270.0 |
C1 |
C2 |
C3 |
O3 |
98.1 |
150.0 |
C1 |
C2 |
C3 |
H3 |
337.7 |
30.0 |
C2 |
C1 |
O1 |
H11 |
125.3 |
119.9 |
C2 |
C1 |
O1 |
H12 |
234.7 |
240.0 |
O1 |
C1 |
C2 |
C3 |
176.8 |
180.1 |
O1 |
C1 |
C2 |
O2 |
3.9 |
0.0 |
H11 |
C1 |
O1 |
H12 |
109.5 |
120.0 |
C2 |
C1 |
H11 |
O1 |
239.6 |
240.0 |
C2 |
C1 |
H11 |
H12 |
119.8 |
120.0 |
H11 |
C1 |
C2 |
C3 |
302.1 |
300.0 |
H11 |
C1 |
C2 |
O2 |
129.2 |
119.9 |
O1 |
C1 |
H11 |
H12 |
240.2 |
240.0 |
H11 |
C1 |
O1 |
HO1 |
54.7 |
60.1 |
C2 |
C1 |
H12 |
O1 |
120.3 |
120.1 |
C2 |
C1 |
H12 |
H11 |
240.2 |
240.0 |
H12 |
C1 |
C2 |
C3 |
51.5 |
60.0 |
H12 |
C1 |
C2 |
O2 |
238.6 |
239.9 |
O1 |
C1 |
H12 |
H11 |
119.9 |
120.0 |
H12 |
C1 |
O1 |
HO1 |
305.3 |
300.0 |
C3 |
C2 |
C1 |
O1 |
176.8 |
180.1 |
C3 |
C2 |
C1 |
H11 |
302.1 |
300.0 |
C3 |
C2 |
C1 |
H12 |
51.5 |
60.0 |
C1 |
C2 |
C3 |
O2 |
186.9 |
179.9 |
C4 |
C3 |
C2 |
O3 |
120.9 |
119.9 |
C4 |
C3 |
C2 |
H3 |
241.3 |
240.0 |
C2 |
C3 |
C4 |
C5 |
170.1 |
180.0 |
C2 |
C3 |
C4 |
O4 |
285.3 |
300.1 |
C2 |
C3 |
C4 |
H4 |
46.7 |
60.0 |
O3 |
C3 |
C2 |
H3 |
120.4 |
120.0 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
59.9 |
O2 |
C2 |
C1 |
O1 |
3.9 |
0.0 |
O2 |
C2 |
C1 |
H11 |
129.2 |
119.9 |
O2 |
C2 |
C1 |
H12 |
238.6 |
239.9 |
C1 |
C2 |
O2 |
C3 |
172.5 |
180.1 |
O2 |
C2 |
C3 |
C4 |
32.0 |
90.0 |
O2 |
C2 |
C3 |
O3 |
271.1 |
330.1 |
O2 |
C2 |
C3 |
H3 |
150.8 |
210.0 |
C4 |
C3 |
C2 |
O2 |
32.0 |
90.0 |
C2 |
C3 |
C4 |
O3 |
240.7 |
240.0 |
C2 |
C3 |
C4 |
H3 |
120.3 |
120.1 |
O3 |
C3 |
C4 |
H3 |
239.7 |
240.0 |
C4 |
C3 |
O3 |
HO3 |
59.0 |
299.9 |
C5 |
C4 |
C3 |
O4 |
244.8 |
240.0 |
C5 |
C4 |
C3 |
H4 |
123.4 |
120.0 |
C3 |
C4 |
C5 |
O5 |
301.3 |
180.0 |
C3 |
C4 |
C5 |
H51 |
66.6 |
60.0 |
C3 |
C4 |
C5 |
H52 |
176.1 |
300.1 |
O4 |
C4 |
C3 |
H4 |
238.6 |
240.1 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
299.9 |
O3 |
C3 |
C2 |
O2 |
271.1 |
330.1 |
C2 |
C3 |
O3 |
C4 |
120.9 |
120.0 |
C2 |
C3 |
O3 |
H3 |
239.6 |
239.9 |
C4 |
C3 |
O3 |
H3 |
118.7 |
119.9 |
O3 |
C3 |
C4 |
C5 |
289.4 |
300.0 |
O3 |
C3 |
C4 |
O4 |
44.7 |
60.0 |
O3 |
C3 |
C4 |
H4 |
166.0 |
180.0 |
H3 |
C3 |
C2 |
O2 |
150.8 |
210.0 |
C2 |
C3 |
H3 |
C4 |
239.4 |
240.0 |
C2 |
C3 |
H3 |
O3 |
119.0 |
120.0 |
C4 |
C3 |
H3 |
O3 |
239.5 |
240.1 |
H3 |
C3 |
C4 |
C5 |
49.7 |
60.0 |
H3 |
C3 |
C4 |
O4 |
165.0 |
180.0 |
H3 |
C3 |
C4 |
H4 |
286.4 |
299.9 |
H3 |
C3 |
O3 |
HO3 |
300.3 |
180.0 |
C5 |
C4 |
C3 |
O3 |
289.4 |
300.0 |
C5 |
C4 |
C3 |
H3 |
49.7 |
60.0 |
C3 |
C4 |
C5 |
O4 |
121.6 |
120.1 |
C3 |
C4 |
C5 |
H4 |
242.7 |
239.9 |
O4 |
C4 |
C5 |
H4 |
121.1 |
119.9 |
C5 |
C4 |
O4 |
HO4 |
299.4 |
60.1 |
O5 |
C5 |
C4 |
H51 |
234.8 |
120.0 |
O5 |
C5 |
C4 |
H52 |
125.2 |
240.0 |
C4 |
C5 |
O5 |
HO5 |
180.0 |
180.0 |
H51 |
C5 |
C4 |
H52 |
250.4 |
119.9 |
O4 |
C4 |
C3 |
O3 |
44.7 |
60.0 |
O4 |
C4 |
C3 |
H3 |
165.0 |
180.0 |
C3 |
C4 |
O4 |
C5 |
240.6 |
239.9 |
C3 |
C4 |
O4 |
H4 |
117.4 |
120.0 |
C5 |
C4 |
O4 |
H4 |
236.8 |
240.1 |
O4 |
C4 |
C5 |
O5 |
179.7 |
60.0 |
O4 |
C4 |
C5 |
H51 |
304.9 |
299.9 |
O4 |
C4 |
C5 |
H52 |
54.5 |
180.0 |
H4 |
C4 |
C3 |
O3 |
166.0 |
180.0 |
H4 |
C4 |
C3 |
H3 |
286.4 |
299.9 |
C3 |
C4 |
H4 |
C5 |
120.6 |
120.1 |
C3 |
C4 |
H4 |
O4 |
237.1 |
240.0 |
C5 |
C4 |
H4 |
O4 |
116.5 |
119.9 |
H4 |
C4 |
C5 |
O5 |
58.6 |
300.1 |
H4 |
C4 |
C5 |
H51 |
183.8 |
180.1 |
H4 |
C4 |
C5 |
H52 |
293.4 |
60.2 |
H4 |
C4 |
O4 |
HO4 |
62.6 |
179.9 |
O5 |
C5 |
C4 |
O4 |
179.7 |
60.0 |
O5 |
C5 |
C4 |
H4 |
58.6 |
300.1 |
C4 |
C5 |
O5 |
H51 |
125.3 |
239.9 |
C4 |
C5 |
O5 |
H52 |
234.7 |
120.1 |
H51 |
C5 |
O5 |
H52 |
109.5 |
240.1 |
H51 |
C5 |
C4 |
O4 |
304.9 |
299.9 |
H51 |
C5 |
C4 |
H4 |
183.8 |
180.1 |
C4 |
C5 |
H51 |
O5 |
235.0 |
120.1 |
C4 |
C5 |
H51 |
H52 |
117.6 |
240.0 |
O5 |
C5 |
H51 |
H52 |
242.6 |
119.9 |
H51 |
C5 |
O5 |
HO5 |
54.7 |
300.0 |
H52 |
C5 |
C4 |
O4 |
54.5 |
180.0 |
H52 |
C5 |
C4 |
H4 |
293.4 |
60.2 |
C4 |
C5 |
H52 |
O5 |
125.0 |
239.9 |
C4 |
C5 |
H52 |
H51 |
242.4 |
120.0 |
O5 |
C5 |
H52 |
H51 |
117.5 |
240.1 |
H52 |
C5 |
O5 |
HO5 |
305.3 |
59.9 |
HO1 |
O1 |
C1 |
H11 |
54.7 |
60.1 |
HO1 |
O1 |
C1 |
H12 |
305.3 |
300.0 |
HO3 |
O3 |
C3 |
H3 |
300.3 |
180.0 |
HO4 |
O4 |
C4 |
H4 |
62.6 |
179.9 |
HO5 |
O5 |
C5 |
H51 |
54.7 |
300.0 |
HO5 |
O5 |
C5 |
H52 |
305.3 |
59.9 |