PDB Chemical Component VAD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VAD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
CB |
1.571 |
1.529 |
| CA |
C |
1.529 |
1.506 |
| CA |
OE |
1.464 |
1.430 |
| CA |
HA |
1.116 |
1.090 |
| CB |
CG1 |
1.527 |
1.529 |
| CB |
CG2 |
1.527 |
1.531 |
| CB |
HB |
1.115 |
1.090 |
| CG1 |
HG11 |
1.114 |
1.090 |
| CG1 |
HG12 |
1.116 |
1.089 |
| CG1 |
HG13 |
1.115 |
1.090 |
| CG2 |
HG21 |
1.114 |
1.089 |
| CG2 |
HG22 |
1.115 |
1.090 |
| CG2 |
HG23 |
1.115 |
1.090 |
| C |
O |
1.227 |
1.207 |
| C |
OXT |
1.330 |
1.343 |
| OXT |
HXT |
0.949 |
0.967 |
| OE |
HOE |
0.951 |
0.966 |
Bond Angles for VAD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
C |
113.2 |
109.5 |
| CB |
CA |
OE |
103.2 |
109.5 |
| CB |
CA |
HA |
112.1 |
109.5 |
| CA |
CB |
CG1 |
111.0 |
109.5 |
| CA |
CB |
CG2 |
111.2 |
109.4 |
| CA |
CB |
HB |
107.5 |
109.5 |
| C |
CA |
OE |
111.8 |
109.4 |
| C |
CA |
HA |
103.5 |
109.5 |
| CA |
C |
O |
120.3 |
120.1 |
| CA |
C |
OXT |
116.8 |
120.0 |
| OE |
CA |
HA |
113.4 |
109.5 |
| CA |
OE |
HOE |
103.2 |
106.8 |
| CG1 |
CB |
CG2 |
110.3 |
109.5 |
| CG1 |
CB |
HB |
108.4 |
109.5 |
| CB |
CG1 |
HG11 |
111.1 |
109.5 |
| CB |
CG1 |
HG12 |
111.6 |
109.5 |
| CB |
CG1 |
HG13 |
111.6 |
109.5 |
| CG2 |
CB |
HB |
108.3 |
109.4 |
| CB |
CG2 |
HG21 |
111.1 |
109.5 |
| CB |
CG2 |
HG22 |
111.5 |
109.4 |
| CB |
CG2 |
HG23 |
111.5 |
109.4 |
| HG11 |
CG1 |
HG12 |
111.6 |
109.4 |
| HG11 |
CG1 |
HG13 |
111.7 |
109.5 |
| HG12 |
CG1 |
HG13 |
98.7 |
109.5 |
| HG21 |
CG2 |
HG22 |
111.7 |
109.5 |
| HG21 |
CG2 |
HG23 |
111.7 |
109.5 |
| HG22 |
CG2 |
HG23 |
98.8 |
109.5 |
| O |
C |
OXT |
122.8 |
119.9 |
| C |
OXT |
HXT |
116.8 |
120.0 |
Torsion Angles for VAD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
CB |
OE |
121.0 |
119.9 |
| C |
CA |
CB |
HA |
243.4 |
239.9 |
| CB |
CA |
C |
O |
271.6 |
240.0 |
| CB |
CA |
C |
OXT |
92.1 |
60.0 |
| OE |
CA |
CB |
HA |
122.4 |
120.0 |
| CB |
CA |
OE |
HOE |
180.0 |
60.0 |
| CG1 |
CB |
CA |
CG2 |
236.8 |
240.0 |
| CG1 |
CB |
CA |
HB |
118.4 |
120.1 |
| CA |
CB |
CG1 |
HG11 |
180.0 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
305.3 |
300.0 |
| CA |
CB |
CG1 |
HG13 |
54.7 |
60.0 |
| CG2 |
CB |
CA |
HB |
241.6 |
240.1 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
305.3 |
60.0 |
| CA |
CB |
CG2 |
HG23 |
54.7 |
180.0 |
| CB |
CA |
C |
OE |
244.0 |
240.0 |
| CB |
CA |
C |
HA |
121.6 |
120.0 |
| C |
CA |
CB |
CG1 |
276.6 |
180.0 |
| C |
CA |
CB |
CG2 |
39.8 |
300.0 |
| C |
CA |
CB |
HB |
158.2 |
59.9 |
| OE |
CA |
C |
HA |
237.6 |
240.0 |
| C |
CA |
OE |
HOE |
58.0 |
299.9 |
| O |
C |
CA |
OXT |
179.4 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
OE |
C |
122.0 |
120.0 |
| CB |
CA |
OE |
HA |
238.5 |
240.0 |
| OE |
CA |
CB |
CG1 |
155.6 |
60.0 |
| OE |
CA |
CB |
CG2 |
278.8 |
180.0 |
| OE |
CA |
CB |
HB |
37.2 |
300.0 |
| C |
CA |
OE |
HA |
116.6 |
120.0 |
| OE |
CA |
C |
O |
27.6 |
0.0 |
| OE |
CA |
C |
OXT |
208.2 |
180.0 |
| CB |
CA |
HA |
C |
237.7 |
239.9 |
| CB |
CA |
HA |
OE |
116.3 |
120.0 |
| HA |
CA |
CB |
CG1 |
33.2 |
300.0 |
| HA |
CA |
CB |
CG2 |
156.5 |
60.0 |
| HA |
CA |
CB |
HB |
274.8 |
180.0 |
| C |
CA |
HA |
OE |
238.7 |
240.1 |
| HA |
CA |
C |
O |
150.0 |
120.0 |
| HA |
CA |
C |
OXT |
330.6 |
299.9 |
| HA |
CA |
OE |
HOE |
301.5 |
180.0 |
| CG1 |
CB |
CA |
C |
276.6 |
180.0 |
| CG1 |
CB |
CA |
OE |
155.6 |
60.0 |
| CG1 |
CB |
CA |
HA |
33.2 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
123.7 |
119.9 |
| CA |
CB |
CG1 |
HB |
242.2 |
239.9 |
| CG2 |
CB |
CG1 |
HB |
118.5 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
303.6 |
60.0 |
| CG1 |
CB |
CG2 |
HG22 |
68.9 |
180.0 |
| CG1 |
CB |
CG2 |
HG23 |
178.3 |
300.0 |
| HG11 |
CG1 |
CB |
HG12 |
234.8 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
125.3 |
120.0 |
| HG12 |
CG1 |
CB |
HG13 |
250.6 |
240.0 |
| CG2 |
CB |
CA |
C |
39.8 |
300.0 |
| CG2 |
CB |
CA |
OE |
278.8 |
180.0 |
| CG2 |
CB |
CA |
HA |
156.5 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
236.4 |
240.0 |
| CA |
CB |
CG2 |
HB |
117.9 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.5 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
56.3 |
60.0 |
| CG2 |
CB |
CG1 |
HG12 |
181.6 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
291.0 |
300.0 |
| HG21 |
CG2 |
CB |
HG22 |
234.7 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.3 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
250.6 |
240.0 |
| HB |
CB |
CA |
C |
158.2 |
59.9 |
| HB |
CB |
CA |
OE |
37.2 |
300.0 |
| HB |
CB |
CA |
HA |
274.8 |
180.0 |
| CA |
CB |
HB |
CG1 |
120.1 |
120.1 |
| CA |
CB |
HB |
CG2 |
239.8 |
240.1 |
| CG1 |
CB |
HB |
CG2 |
119.7 |
120.0 |
| HB |
CB |
CG1 |
HG11 |
297.9 |
300.1 |
| HB |
CB |
CG1 |
HG12 |
63.1 |
60.1 |
| HB |
CB |
CG1 |
HG13 |
172.5 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
62.2 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
187.4 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
296.8 |
60.0 |
| HG11 |
CG1 |
CB |
CG2 |
56.3 |
60.0 |
| HG11 |
CG1 |
CB |
HB |
297.9 |
300.1 |
| CB |
CG1 |
HG11 |
HG12 |
125.2 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
234.7 |
240.0 |
| HG12 |
CG1 |
HG11 |
HG13 |
109.5 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
181.6 |
180.0 |
| HG12 |
CG1 |
CB |
HB |
63.1 |
60.1 |
| CB |
CG1 |
HG12 |
HG11 |
235.1 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
117.5 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
242.5 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
291.0 |
300.0 |
| HG13 |
CG1 |
CB |
HB |
172.5 |
180.0 |
| CB |
CG1 |
HG13 |
HG11 |
125.0 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
242.5 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
117.5 |
120.0 |
| HG21 |
CG2 |
CB |
HB |
62.2 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.2 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
187.4 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
235.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
117.4 |
119.9 |
| HG21 |
CG2 |
HG22 |
HG23 |
242.4 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
296.8 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
125.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
242.6 |
240.1 |
| HG21 |
CG2 |
HG23 |
HG22 |
117.6 |
120.1 |
| O |
C |
CA |
OE |
27.6 |
0.0 |
| O |
C |
CA |
HA |
150.0 |
120.0 |
| CA |
C |
O |
OXT |
180.6 |
180.0 |
| O |
C |
OXT |
HXT |
0.6 |
359.9 |
| OXT |
C |
CA |
OE |
208.2 |
180.0 |
| OXT |
C |
CA |
HA |
330.6 |
299.9 |
| CA |
C |
OXT |
O |
179.4 |
180.0 |
| HOE |
OE |
CA |
HA |
301.5 |
180.0 |