PDB Chemical Component URD

Ideal Model

Chemical Description

Name 1-((2R,3R,4S,5R)-TETRAHYDRO-3,4-DIHYDROXY-5-(HYDROXYMETHYL)FURAN-2-YL)PYRIDINE-2,4(1H,3H)-DIONE
Synonyms 3-DEAZAURIDINE
Formula C10 H13 N O6
Formal charge 0
Molecular weight 243.213 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 30
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms HO5' HO3'
Bond count 31
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-beta-D-ribofuranosylpyridine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyridine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)CC2=O
SMILES (CACTVS) OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)CC2=O
Stereo SMILES (OpenEye) C1C(=O)C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
InChI descriptor InChI=1S/C10H13NO6/c12-4-6-8(15)9(16)10(17-6)11-2-1-5(13)3-7(11)14/h1-2,6,8-10,12,15-16H,3-4H2/t6-,8-,9-,10-/m1/s1
InChIKey descriptor WIRVQQCUKDPURA-PEBGCTIMSA-N

Status Information

Last modified 2021-03-01
Created 2005-04-08
Release status REL
Processing site RCSB