PDB Chemical Component TRE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TRE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O4P	C4P	1.434	1.429
O2	C2	1.438	1.429
O3P	C3P	1.435	1.429
O3	C3	1.434	1.428
C3P	C4P	1.518	1.532
C3P	C2P	1.528	1.531
C4P	C5P	1.529	1.531
C2	C3	1.524	1.532
C2	C1	1.523	1.531
C5P	C6P	1.522	1.530
C5P	O5P	1.436	1.429
C6P	O6P	1.440	1.429
C3	C4	1.521	1.532
O1	C1	1.428	1.430
O1	C1P	1.427	1.429
O2P	C2P	1.430	1.429
C1	O5	1.431	1.428
C2P	C1P	1.517	1.531
O5P	C1P	1.426	1.428
C4	O4	1.425	1.429
C4	C5	1.522	1.530
O5	C5	1.427	1.429
C5	C6	1.523	1.530
C6	O6	1.441	1.429
C1	HC1	1.100	1.091
C2	HC2	1.100	1.090
C3	HC3	1.100	1.089
C4	HC4	1.100	1.090
C5	HC5	1.101	1.091
C6	HC61	1.100	1.090
C6	HC62	1.100	1.090
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.967
C1P	HC1P	1.100	1.091
C2P	HC2P	1.100	1.090
C3P	HC3P	1.100	1.090
C4P	HC4P	1.100	1.090
C5P	HC5P	1.100	1.090
C6P	H6P1	1.100	1.090
C6P	H6P2	1.100	1.090
O2P	HO2P	0.950	0.967
O3P	HO3P	0.950	0.967
O4P	HO4P	0.950	0.967
O6P	HO6P	0.950	0.968

Bond Angles for TRE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O4P	C4P	HC4P	110.9	109.5
O2	C2	HC2	109.8	109.6
O3P	C3P	HC3P	109.9	109.6
O3	C3	HC3	109.8	109.6
C3P	C4P	C5P	108.8	109.2
C4P	C3P	HC3P	108.8	109.5
C3P	C4P	HC4P	109.8	109.5
C3P	C2P	HC2P	109.0	109.6
C4P	C5P	C6P	114.3	109.5
C4P	C5P	O5P	110.2	109.4
C5P	C4P	HC4P	109.6	109.5
C4P	C5P	HC5P	107.6	109.4
C2	C3	C4	110.8	109.0
C3	C2	HC2	108.6	109.5
C2	C3	HC3	108.6	109.5
C2	C1	O5	110.5	109.4
C2	C1	HC1	108.1	109.5
C6P	C5P	O5P	108.0	109.5
C5P	C6P	O6P	107.4	109.4
C6P	C5P	HC5P	107.7	109.5
C5P	C6P	H6P1	110.0	109.5
C5P	C6P	H6P2	110.0	109.5
O5P	C5P	HC5P	108.8	109.5
O6P	C6P	H6P1	110.0	109.4
O6P	C6P	H6P2	110.0	109.5
C6P	O6P	HO6P	109.5	114.0
C3	C4	O4	109.3	109.5
C3	C4	C5	108.6	109.2
C4	C3	HC3	108.6	109.5
C3	C4	HC4	109.0	109.5
O1	C1	HC1	109.3	109.5
O1	C1P	HC1P	109.7	109.4
O2P	C2P	HC2P	110.3	109.5
C1	O5	C5	114.5	114.1
O5	C1	HC1	109.2	109.5
C2P	C1P	HC1P	108.5	109.5
O5P	C1P	HC1P	109.7	109.5
C5	C4	O4	110.7	109.5
O4	C4	HC4	110.3	109.5
C4	O4	HO4	109.5	114.0
C4	C5	C6	112.5	109.5
C5	C4	HC4	108.9	109.6
C4	C5	HC5	108.8	109.4
O5	C5	HC5	110.1	109.5
C5	C6	O6	109.6	109.5
C6	C5	HC5	108.8	109.5
C5	C6	HC61	109.4	109.5
C5	C6	HC62	109.4	109.4
O6	C6	HC61	109.4	109.5
O6	C6	HC62	109.4	109.5
C6	O6	HO6	109.5	114.0
HC61	C6	HC62	109.5	109.4
H6P1	C6P	H6P2	109.5	109.5

Torsion Angles for TRE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4P	C4P	C3P	HC3P	58.3	57.0
C3P	C4P	O4P	HC4P	119.2	120.1
O4P	C4P	C5P	O5P	185.6	182.4
C5P	C4P	O4P	HC4P	237.5	239.9
O4P	C4P	C5P	HC5P	304.2	302.4
C3	C2	O2	HC2	240.7	239.9
O2	C2	C3	HC3	308.0	302.9
O2	C2	C1	O5	170.9	177.5
O2	C2	C1	HC1	290.3	297.5
C4P	C3P	O3P	HC3P	118.8	120.2
O3P	C3P	C4P	HC4P	58.6	57.0
O3P	C3P	C2P	HC2P	304.5	303.0
O3	C3	C2	HC2	307.8	303.1
C2	C3	O3	HC3	240.9	239.7
O3	C3	C4	O4	297.7	296.8
C4	C3	O3	HC3	119.3	120.2
O3	C3	C4	HC4	58.3	56.8
O4P	C4P	C3P	HC4P	240.1	239.8
O3P	C3P	C4P	HC3P	240.4	239.7
C4P	C3P	C2P	HC2P	64.5	62.9
C3P	C4P	C5P	C6P	180.5	182.4
C3P	C4P	C5P	O5P	302.3	302.4
C5P	C4P	C3P	HC4P	119.9	119.9
C3P	C4P	C5P	HC5P	60.8	62.4
O2P	C2P	C3P	HC2P	120.7	120.2
C3P	C2P	C1P	HC1P	174.3	177.6
O4P	C4P	C5P	HC4P	123.3	120.1
C5P	C4P	C3P	HC3P	298.1	297.1
C3P	C4P	C5P	HC4P	240.0	240.1
C6P	C5P	C4P	O5P	238.2	240.0
C4P	C5P	C6P	O6P	190.1	185.0
C6P	C5P	C4P	HC5P	119.6	120.0
C4P	C5P	C6P	H6P1	309.7	304.9
C4P	C5P	C6P	H6P2	70.4	65.0
O5P	C5P	C4P	HC5P	241.4	240.0
O2	C2	C3	HC2	120.0	120.2
O3	C3	C2	HC3	119.8	120.3
C3	C2	C1	O5	49.9	57.6
C3	C2	C1	HC1	169.4	177.6
C2	C3	C4	O4	176.9	176.9
C2	C3	C4	C5	56.0	56.9
C4	C3	C2	HC3	240.8	240.2
C2	C3	C4	HC4	297.5	296.9
O1	C1	C2	HC1	118.1	120.0
C2	C1	O5	C5	301.9	298.9
O5	C1	C2	HC1	240.5	240.0
C4P	C5P	C6P	O5P	123.0	119.9
C6P	C5P	C4P	HC4P	300.5	302.3
C4P	C5P	C6P	HC5P	240.4	240.0
O5P	C5P	C6P	HC5P	117.4	120.1
O6P	C6P	C5P	H6P1	240.3	240.1
O6P	C6P	C5P	H6P2	119.7	120.0
C5P	C6P	O6P	HO6P	180.0	180.0
H6P1	C6P	C5P	H6P2	239.4	239.9
C4P	C5P	O5P	C6P	234.5	240.1
O5P	C5P	C4P	HC4P	62.3	62.3
C4P	C5P	O5P	HC5P	117.8	120.0
O5P	C5P	C6P	O6P	67.0	65.1
C6P	C5P	O5P	HC5P	243.3	239.9
O5P	C5P	C6P	H6P1	186.7	185.0
O5P	C5P	C6P	H6P2	307.3	305.1
C5P	O5P	C1P	HC1P	183.4	178.8
O6P	C6P	C5P	O5P	67.0	65.1
O6P	C6P	C5P	HC5P	309.6	305.0
C5P	C6P	O6P	H6P1	119.7	120.0
C5P	C6P	O6P	H6P2	240.3	240.0
H6P1	C6P	O6P	H6P2	120.6	120.0
O3	C3	C4	HC3	240.0	239.7
C4	C3	C2	HC2	68.8	63.0
C2	C3	C4	HC3	119.2	119.8
C5	C4	C3	O4	239.1	240.0
O4	C4	C3	HC4	239.4	239.9
C3	C4	O4	HO4	180.0	59.9
C3	C4	C5	C6	179.3	182.4
C5	C4	C3	HC4	118.5	120.0
C3	C4	C5	HC5	58.7	62.4
C2	C1	O1	HC1	242.7	240.0
O5	C1	O1	HC1	121.1	120.1
C1P	O1	C1	HC1	296.3	310.0
C2P	C1P	O1	HC1P	242.5	240.0
O5P	C1P	O1	HC1P	121.3	120.0
C3P	C2P	O2P	HC2P	240.1	239.7
O2P	C2P	C1P	HC1P	294.3	297.6
C2	C1	O5	HC1	118.7	120.0
O1	C1	O5	HC1	238.9	240.0
C1	O5	C5	HC5	305.1	301.2
O1	C1P	C2P	HC1P	118.3	120.0
O5P	C1P	C2P	HC1P	239.3	240.0
O1	C1P	O5P	HC1P	238.8	240.0
C2P	C1P	O5P	HC1P	120.0	120.0
C3	C4	O4	C5	240.4	240.2
O4	C4	C3	HC3	57.7	57.1
C3	C4	O4	HC4	119.8	120.0
O4	C4	C5	C6	59.3	62.5
C5	C4	O4	HC4	239.3	239.8
O4	C4	C5	HC5	298.7	302.5
C3	C4	C5	O4	120.0	120.0
C5	C4	C3	HC3	296.8	297.1
C3	C4	C5	HC4	241.4	240.1
C1	O5	C5	C4	63.9	61.1
O4	C4	C5	HC4	121.4	120.1
C5	C4	O4	HO4	299.6	179.7
O5	C5	C4	HC5	240.4	240.0
C4	C5	C6	O6	181.7	185.0
C6	C5	C4	HC5	120.6	120.0
C4	C5	C6	HC61	301.7	305.0
C4	C5	C6	HC62	61.7	65.0
C5	O5	C1	HC1	183.2	178.9
O5	C5	C4	HC4	57.7	62.3
C4	C5	O5	HC5	118.8	119.9
O5	C5	C6	O6	62.0	65.1
C6	C5	O5	HC5	241.1	240.0
O5	C5	C6	HC61	182.0	185.1
O5	C5	C6	HC62	302.0	305.0
C1	O5	C5	C6	186.2	181.1
C6	C5	C4	O4	59.3	62.5
C6	C5	C4	HC4	297.9	302.3
C4	C5	C6	HC5	239.4	240.0
O5	C5	C6	HC5	119.7	120.1
O6	C6	C5	HC61	240.0	240.0
O6	C6	C5	HC62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
HC61	C6	C5	HC62	240.0	240.0
O6	C6	C5	HC5	302.3	305.0
C5	C6	O6	HC61	120.0	120.0
C5	C6	O6	HC62	240.0	240.0
HC61	C6	O6	HC62	120.0	120.0
C2	C1	HC1	O5	239.7	240.0
HC1	C1	O5	C5	183.2	178.9
HC2	C2	C3	C4	68.8	63.0
HC2	C2	C3	HC3	187.9	182.8
HC2	C2	C1	O5	290.2	297.7
HC2	C2	C1	HC1	49.7	57.7
C2	C3	HC3	C4	239.5	240.5
HC3	C3	C2	HC2	187.9	182.8
HC3	C3	C4	O4	57.7	57.1
HC3	C3	C4	C5	296.8	297.1
HC3	C3	C4	HC4	178.3	177.1
C3	C4	HC4	O4	240.0	239.9
C3	C4	HC4	C5	118.3	119.7
HC4	C4	C3	HC3	178.3	177.1
C5	C4	HC4	O4	121.7	120.2
HC4	C4	O4	HO4	60.2	299.9
HC4	C4	C5	C6	297.9	302.3
HC4	C4	C5	HC5	177.3	182.3
HC5	C5	C4	O4	298.7	302.5
C4	C5	HC5	C6	122.9	120.0
HC5	C5	C4	HC4	177.3	182.3
HC5	C5	C6	O6	302.3	305.0
HC5	C5	C6	HC61	62.3	65.0
HC5	C5	C6	HC62	182.3	185.0
C5	C6	HC61	O6	239.9	240.0
HC61	C6	C5	HC5	62.3	65.0
C5	C6	HC61	HC62	119.9	120.0
O6	C6	HC61	HC62	240.0	240.0
HC61	C6	O6	HO6	60.0	60.0
C5	C6	HC62	O6	120.1	120.0
HC62	C6	C5	HC5	182.3	185.0
C5	C6	HC62	HC61	240.1	240.0
O6	C6	HC62	HC61	120.0	120.0
HC62	C6	O6	HO6	300.0	300.0
HO2	O2	C2	HC2	299.3	300.1
HO3	O3	C3	HC3	299.1	60.2
HO4	O4	C4	HC4	60.2	299.9
HO6	O6	C6	HC61	60.0	60.0
HO6	O6	C6	HC62	300.0	300.0
HC2P	C2P	C1P	HC1P	54.6	57.7
HC3P	C3P	C4P	C5P	298.1	297.1
HC3P	C3P	C4P	HC4P	178.2	177.2
HC3P	C3P	C2P	HC2P	183.4	182.7
C3P	C4P	HC4P	C5P	119.4	119.7
HC4P	C4P	C3P	HC3P	178.2	177.2
HC4P	C4P	C5P	C6P	300.5	302.3
HC4P	C4P	C5P	O5P	62.3	62.3
HC4P	C4P	C5P	HC5P	180.9	182.3
C4P	C5P	HC5P	C6P	123.7	120.0
C4P	C5P	HC5P	O5P	240.6	240.1
HC5P	C5P	C4P	HC4P	180.9	182.3
C6P	C5P	HC5P	O5P	116.8	120.1
HC5P	C5P	C6P	O6P	309.6	305.0
HC5P	C5P	C6P	H6P1	69.3	64.9
HC5P	C5P	C6P	H6P2	189.9	185.0
H6P1	C6P	C5P	O5P	186.7	185.0
C5P	C6P	H6P1	O6P	241.9	240.1
H6P1	C6P	C5P	HC5P	69.3	64.9
C5P	C6P	H6P1	H6P2	120.9	120.1
O6P	C6P	H6P1	H6P2	239.1	240.0
H6P1	C6P	O6P	HO6P	60.3	60.0
H6P2	C6P	C5P	O5P	307.3	305.1
C5P	C6P	H6P2	O6P	118.1	120.0
H6P2	C6P	C5P	HC5P	189.9	185.0
C5P	C6P	H6P2	H6P1	239.1	239.9
O6P	C6P	H6P2	H6P1	120.9	120.0
H6P2	C6P	O6P	HO6P	299.7	300.0
HO2P	O2P	C2P	HC2P	299.9	299.9
HO3P	O3P	C3P	HC3P	61.2	59.8
HO4P	O4P	C4P	HC4P	60.8	299.8
HO6P	O6P	C6P	H6P1	60.3	60.0
HO6P	O6P	C6P	H6P2	299.7	300.0