PDB Chemical Component TPS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TPS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CM2 |
C2A |
1.466 |
1.507 |
CM2 |
HM21 |
1.100 |
1.091 |
CM2 |
HM22 |
1.100 |
1.090 |
CM2 |
HM23 |
1.100 |
1.089 |
N3 |
C2 |
1.341 |
1.290 |
N3 |
C4 |
1.374 |
1.318 |
N3 |
C7A |
1.530 |
1.465 |
C2 |
S1 |
1.677 |
1.709 |
C2 |
H2 |
1.080 |
1.080 |
S1 |
C5 |
1.743 |
1.763 |
C5 |
C4 |
1.376 |
1.337 |
C5 |
C6 |
1.506 |
1.507 |
C4 |
CM4 |
1.491 |
1.507 |
CM4 |
HM41 |
1.100 |
1.090 |
CM4 |
HM42 |
1.100 |
1.090 |
CM4 |
HM43 |
1.100 |
1.090 |
C6 |
C7 |
1.490 |
1.530 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
C7 |
O7 |
1.448 |
1.428 |
C7 |
H71 |
1.100 |
1.091 |
C7 |
H72 |
1.100 |
1.090 |
O7 |
P1 |
1.581 |
1.610 |
N1A |
C2A |
1.369 |
1.316 |
N1A |
C6A |
1.348 |
1.326 |
C2A |
N3A |
1.290 |
1.318 |
N3A |
C4A |
1.368 |
1.330 |
C4A |
N4A |
1.332 |
1.385 |
C4A |
C5A |
1.444 |
1.396 |
N4A |
H41N |
1.000 |
0.970 |
N4A |
H42N |
1.000 |
0.970 |
C5A |
C6A |
1.366 |
1.381 |
C5A |
C7A |
1.514 |
1.507 |
C6A |
H6A |
1.080 |
1.080 |
C7A |
H7A1 |
1.099 |
1.090 |
C7A |
H7A2 |
1.100 |
1.091 |
P1 |
O1 |
1.479 |
1.479 |
P1 |
O2 |
1.500 |
1.610 |
P1 |
O3 |
1.492 |
1.610 |
O2 |
HO2 |
0.950 |
0.966 |
O3 |
HO3 |
0.950 |
0.967 |
Bond Angles for TPS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2A |
CM2 |
HM21 |
109.5 |
109.5 |
C2A |
CM2 |
HM22 |
109.4 |
109.5 |
C2A |
CM2 |
HM23 |
109.5 |
109.5 |
CM2 |
C2A |
N1A |
115.0 |
119.1 |
CM2 |
C2A |
N3A |
120.5 |
119.1 |
HM21 |
CM2 |
HM22 |
109.5 |
109.4 |
HM21 |
CM2 |
HM23 |
109.5 |
109.5 |
HM22 |
CM2 |
HM23 |
109.5 |
109.5 |
C2 |
N3 |
C4 |
110.4 |
117.1 |
C2 |
N3 |
C7A |
124.0 |
121.5 |
N3 |
C2 |
S1 |
115.2 |
110.2 |
N3 |
C2 |
H2 |
122.4 |
124.9 |
C4 |
N3 |
C7A |
125.6 |
121.4 |
N3 |
C4 |
C5 |
114.9 |
114.5 |
N3 |
C4 |
CM4 |
118.2 |
122.8 |
N3 |
C7A |
C5A |
113.3 |
109.5 |
N3 |
C7A |
H7A1 |
108.2 |
109.5 |
N3 |
C7A |
H7A2 |
107.3 |
109.5 |
S1 |
C2 |
H2 |
122.4 |
124.9 |
C2 |
S1 |
C5 |
90.3 |
90.3 |
S1 |
C5 |
C4 |
108.9 |
107.9 |
S1 |
C5 |
C6 |
123.2 |
126.0 |
C4 |
C5 |
C6 |
127.8 |
126.1 |
C5 |
C4 |
CM4 |
125.6 |
122.7 |
C5 |
C6 |
C7 |
115.3 |
109.5 |
C5 |
C6 |
H61 |
107.6 |
109.5 |
C5 |
C6 |
H62 |
106.2 |
109.4 |
C4 |
CM4 |
HM41 |
109.5 |
109.5 |
C4 |
CM4 |
HM42 |
109.5 |
109.4 |
C4 |
CM4 |
HM43 |
109.5 |
109.5 |
HM41 |
CM4 |
HM42 |
109.4 |
109.4 |
HM41 |
CM4 |
HM43 |
109.5 |
109.5 |
HM42 |
CM4 |
HM43 |
109.5 |
109.5 |
C7 |
C6 |
H61 |
107.6 |
109.5 |
C7 |
C6 |
H62 |
106.2 |
109.5 |
C6 |
C7 |
O7 |
116.1 |
109.5 |
C6 |
C7 |
H71 |
107.3 |
109.4 |
C6 |
C7 |
H72 |
105.8 |
109.5 |
H61 |
C6 |
H62 |
114.2 |
109.5 |
O7 |
C7 |
H71 |
107.3 |
109.5 |
O7 |
C7 |
H72 |
105.8 |
109.5 |
C7 |
O7 |
P1 |
127.1 |
123.0 |
H71 |
C7 |
H72 |
114.8 |
109.4 |
O7 |
P1 |
O1 |
108.4 |
109.5 |
O7 |
P1 |
O2 |
103.2 |
109.5 |
O7 |
P1 |
O3 |
106.8 |
109.4 |
C2A |
N1A |
C6A |
117.0 |
121.0 |
N1A |
C2A |
N3A |
124.5 |
121.9 |
N1A |
C6A |
C5A |
122.3 |
119.1 |
N1A |
C6A |
H6A |
118.9 |
120.5 |
C2A |
N3A |
C4A |
120.0 |
120.7 |
N3A |
C4A |
N4A |
119.2 |
120.5 |
N3A |
C4A |
C5A |
118.2 |
118.9 |
N4A |
C4A |
C5A |
122.6 |
120.6 |
C4A |
N4A |
H41N |
109.5 |
120.0 |
C4A |
N4A |
H42N |
109.5 |
120.0 |
C4A |
C5A |
C6A |
116.6 |
118.4 |
C4A |
C5A |
C7A |
121.9 |
120.8 |
H41N |
N4A |
H42N |
109.5 |
120.0 |
C6A |
C5A |
C7A |
121.5 |
120.8 |
C5A |
C6A |
H6A |
118.9 |
120.4 |
C5A |
C7A |
H7A1 |
108.2 |
109.5 |
C5A |
C7A |
H7A2 |
107.3 |
109.4 |
H7A1 |
C7A |
H7A2 |
112.5 |
109.4 |
O1 |
P1 |
O2 |
113.5 |
109.5 |
O1 |
P1 |
O3 |
110.6 |
109.5 |
O2 |
P1 |
O3 |
113.7 |
109.5 |
P1 |
O2 |
HO2 |
109.5 |
114.0 |
P1 |
O3 |
HO3 |
109.5 |
114.1 |
Torsion Angles for TPS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HM21 |
CM2 |
C2A |
HM22 |
240.0 |
240.0 |
HM21 |
CM2 |
C2A |
HM23 |
120.0 |
120.0 |
HM22 |
CM2 |
C2A |
HM23 |
240.0 |
240.0 |
CM2 |
C2A |
N1A |
C6A |
175.4 |
180.0 |
N1A |
C2A |
CM2 |
N3A |
180.0 |
180.0 |
CM2 |
C2A |
N3A |
C4A |
184.0 |
180.1 |
C2A |
CM2 |
HM21 |
HM22 |
120.0 |
120.0 |
C2A |
CM2 |
HM21 |
HM23 |
240.0 |
240.0 |
HM21 |
CM2 |
C2A |
N1A |
57.4 |
90.0 |
HM21 |
CM2 |
C2A |
N3A |
237.4 |
270.0 |
HM22 |
CM2 |
HM21 |
HM23 |
120.0 |
120.0 |
C2A |
CM2 |
HM22 |
HM21 |
240.0 |
240.0 |
C2A |
CM2 |
HM22 |
HM23 |
120.0 |
120.0 |
HM22 |
CM2 |
C2A |
N1A |
177.4 |
209.9 |
HM22 |
CM2 |
C2A |
N3A |
357.4 |
30.0 |
HM21 |
CM2 |
HM22 |
HM23 |
240.0 |
240.0 |
C2A |
CM2 |
HM23 |
HM21 |
120.0 |
120.0 |
C2A |
CM2 |
HM23 |
HM22 |
240.0 |
240.0 |
HM23 |
CM2 |
C2A |
N1A |
297.3 |
330.0 |
HM23 |
CM2 |
C2A |
N3A |
117.3 |
150.0 |
HM21 |
CM2 |
HM23 |
HM22 |
120.0 |
119.9 |
C4 |
N3 |
C2 |
C7A |
181.9 |
180.3 |
C2 |
N3 |
C4 |
C5 |
354.0 |
360.0 |
C2 |
N3 |
C4 |
CM4 |
186.2 |
180.0 |
C2 |
N3 |
C7A |
C5A |
266.5 |
268.5 |
C2 |
N3 |
C7A |
H7A1 |
26.5 |
28.5 |
C2 |
N3 |
C7A |
H7A2 |
148.2 |
148.5 |
S1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
N3 |
C2 |
S1 |
C5 |
358.4 |
360.0 |
C2 |
N3 |
C4 |
C7A |
178.0 |
179.7 |
C4 |
N3 |
C2 |
S1 |
4.5 |
0.0 |
C4 |
N3 |
C2 |
H2 |
184.5 |
180.0 |
C4 |
N3 |
C7A |
C5A |
84.3 |
88.2 |
C4 |
N3 |
C7A |
H7A1 |
204.3 |
208.3 |
C4 |
N3 |
C7A |
H7A2 |
326.0 |
328.2 |
S1 |
C5 |
C4 |
N3 |
4.7 |
0.0 |
N3 |
C4 |
C5 |
C6 |
184.9 |
180.0 |
C5 |
C4 |
N3 |
CM4 |
167.8 |
180.0 |
N3 |
C4 |
CM4 |
HM41 |
345.7 |
95.6 |
N3 |
C4 |
CM4 |
HM42 |
105.6 |
215.5 |
N3 |
C4 |
CM4 |
HM43 |
225.7 |
335.5 |
C2 |
N3 |
C7A |
C4 |
182.2 |
180.3 |
C7A |
N3 |
C2 |
S1 |
182.6 |
179.7 |
C7A |
N3 |
C2 |
H2 |
2.6 |
359.7 |
C7A |
N3 |
C4 |
C5 |
176.0 |
180.3 |
C7A |
N3 |
C4 |
CM4 |
8.2 |
0.2 |
C4A |
C5A |
C7A |
N3 |
251.2 |
82.6 |
C6A |
C5A |
C7A |
N3 |
72.6 |
262.6 |
C5A |
C7A |
N3 |
H7A1 |
240.0 |
240.0 |
C5A |
C7A |
N3 |
H7A2 |
118.3 |
120.0 |
H7A1 |
C7A |
N3 |
H7A2 |
238.3 |
240.0 |
S1 |
C2 |
N3 |
C4 |
4.5 |
0.0 |
S1 |
C2 |
N3 |
C7A |
182.6 |
179.7 |
N3 |
C2 |
S1 |
H2 |
180.0 |
180.0 |
C2 |
S1 |
C5 |
C4 |
358.3 |
360.0 |
C2 |
S1 |
C5 |
C6 |
178.1 |
180.0 |
H2 |
C2 |
N3 |
C4 |
184.5 |
180.0 |
H2 |
C2 |
N3 |
C7A |
2.6 |
359.7 |
N3 |
C2 |
H2 |
S1 |
180.0 |
180.0 |
H2 |
C2 |
S1 |
C5 |
178.4 |
180.0 |
N3 |
C4 |
C5 |
S1 |
4.7 |
0.0 |
C5 |
S1 |
C2 |
H2 |
178.4 |
180.0 |
C4 |
C5 |
S1 |
C6 |
180.2 |
180.0 |
S1 |
C5 |
C4 |
CM4 |
171.5 |
180.0 |
S1 |
C5 |
C6 |
C7 |
84.3 |
270.0 |
S1 |
C5 |
C6 |
H61 |
204.3 |
30.0 |
S1 |
C5 |
C6 |
H62 |
327.0 |
150.0 |
C5 |
C4 |
N3 |
C7A |
176.0 |
180.3 |
N3 |
C4 |
C5 |
CM4 |
193.3 |
180.0 |
S1 |
C5 |
C4 |
C6 |
179.8 |
180.0 |
C4 |
C5 |
C6 |
C7 |
264.1 |
90.0 |
C4 |
C5 |
C6 |
H61 |
24.1 |
210.0 |
C4 |
C5 |
C6 |
H62 |
146.8 |
330.0 |
C5 |
C4 |
CM4 |
HM41 |
179.3 |
275.6 |
C5 |
C4 |
CM4 |
HM42 |
299.3 |
35.5 |
C5 |
C4 |
CM4 |
HM43 |
59.3 |
155.5 |
S1 |
C5 |
C6 |
C4 |
180.2 |
180.0 |
C6 |
C5 |
C4 |
CM4 |
351.7 |
0.1 |
C7 |
C6 |
C5 |
H61 |
240.0 |
240.0 |
C7 |
C6 |
C5 |
H62 |
117.3 |
120.0 |
C5 |
C6 |
C7 |
O7 |
177.4 |
180.0 |
C5 |
C6 |
C7 |
H71 |
297.4 |
300.1 |
C5 |
C6 |
C7 |
H72 |
60.4 |
59.9 |
H61 |
C6 |
C5 |
H62 |
237.4 |
240.0 |
CM4 |
C4 |
N3 |
C7A |
8.2 |
0.2 |
N3 |
C4 |
CM4 |
C5 |
166.4 |
180.0 |
CM4 |
C4 |
C5 |
C6 |
351.7 |
0.1 |
HM41 |
CM4 |
C4 |
HM42 |
240.0 |
240.1 |
HM41 |
CM4 |
C4 |
HM43 |
120.0 |
120.1 |
HM42 |
CM4 |
C4 |
HM43 |
240.0 |
240.0 |
C4 |
CM4 |
HM41 |
HM42 |
120.0 |
119.9 |
C4 |
CM4 |
HM41 |
HM43 |
240.0 |
239.9 |
HM42 |
CM4 |
HM41 |
HM43 |
120.0 |
120.0 |
C4 |
CM4 |
HM42 |
HM41 |
240.0 |
240.0 |
C4 |
CM4 |
HM42 |
HM43 |
120.0 |
120.0 |
HM41 |
CM4 |
HM42 |
HM43 |
240.0 |
240.0 |
C4 |
CM4 |
HM43 |
HM41 |
120.0 |
120.1 |
C4 |
CM4 |
HM43 |
HM42 |
240.0 |
240.0 |
HM41 |
CM4 |
HM43 |
HM42 |
120.0 |
119.9 |
C5 |
C6 |
C7 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
C7 |
H62 |
242.6 |
240.0 |
H61 |
C6 |
C7 |
H62 |
122.6 |
120.0 |
O7 |
C7 |
C6 |
H71 |
240.0 |
240.0 |
O7 |
C7 |
C6 |
H72 |
117.0 |
120.1 |
C6 |
C7 |
O7 |
P1 |
137.0 |
180.0 |
H71 |
C7 |
C6 |
H72 |
236.9 |
240.1 |
C5 |
C6 |
H61 |
C7 |
235.2 |
240.0 |
C5 |
C6 |
H61 |
H62 |
117.6 |
120.0 |
C7 |
C6 |
H61 |
H62 |
242.4 |
240.0 |
H61 |
C6 |
C7 |
O7 |
57.4 |
60.0 |
H61 |
C6 |
C7 |
H71 |
177.4 |
180.0 |
H61 |
C6 |
C7 |
H72 |
300.4 |
299.9 |
C5 |
C6 |
H62 |
C7 |
123.3 |
120.0 |
C5 |
C6 |
H62 |
H61 |
241.6 |
240.0 |
C7 |
C6 |
H62 |
H61 |
118.4 |
120.0 |
H62 |
C6 |
C7 |
O7 |
294.8 |
300.0 |
H62 |
C6 |
C7 |
H71 |
54.7 |
60.0 |
H62 |
C6 |
C7 |
H72 |
177.8 |
179.9 |
O7 |
C7 |
C6 |
H61 |
57.4 |
60.0 |
O7 |
C7 |
C6 |
H62 |
294.8 |
300.0 |
C6 |
C7 |
O7 |
H71 |
120.0 |
120.0 |
C6 |
C7 |
O7 |
H72 |
243.0 |
240.0 |
H71 |
C7 |
O7 |
H72 |
123.0 |
120.0 |
C7 |
O7 |
P1 |
O1 |
303.2 |
55.0 |
C7 |
O7 |
P1 |
O2 |
182.5 |
175.0 |
C7 |
O7 |
P1 |
O3 |
62.5 |
294.9 |
H71 |
C7 |
C6 |
H61 |
177.4 |
180.0 |
H71 |
C7 |
C6 |
H62 |
54.7 |
60.0 |
C6 |
C7 |
H71 |
O7 |
234.6 |
240.0 |
C6 |
C7 |
H71 |
H72 |
117.3 |
119.9 |
O7 |
C7 |
H71 |
H72 |
242.7 |
240.0 |
H71 |
C7 |
O7 |
P1 |
17.1 |
60.0 |
H72 |
C7 |
C6 |
H61 |
300.4 |
299.9 |
H72 |
C7 |
C6 |
H62 |
177.8 |
179.9 |
C6 |
C7 |
H72 |
O7 |
123.7 |
120.1 |
C6 |
C7 |
H72 |
H71 |
241.8 |
240.1 |
O7 |
C7 |
H72 |
H71 |
118.2 |
120.0 |
H72 |
C7 |
O7 |
P1 |
254.0 |
300.1 |
P1 |
O7 |
C7 |
H71 |
17.1 |
60.0 |
P1 |
O7 |
C7 |
H72 |
254.0 |
300.1 |
O1 |
P1 |
O7 |
O2 |
120.7 |
240.0 |
O1 |
P1 |
O7 |
O3 |
240.7 |
120.0 |
O2 |
P1 |
O7 |
O3 |
120.1 |
240.0 |
O7 |
P1 |
O2 |
HO2 |
220.7 |
180.0 |
O7 |
P1 |
O3 |
HO3 |
309.7 |
300.0 |
N1A |
C2A |
CM2 |
HM21 |
57.4 |
90.0 |
N1A |
C2A |
CM2 |
HM22 |
177.4 |
209.9 |
N1A |
C2A |
CM2 |
HM23 |
297.3 |
330.0 |
CM2 |
C2A |
N1A |
N3A |
180.0 |
180.0 |
C2A |
N1A |
C6A |
C5A |
355.6 |
360.0 |
C2A |
N1A |
C6A |
H6A |
175.6 |
180.0 |
N1A |
C2A |
N3A |
C4A |
4.0 |
0.1 |
C6A |
N1A |
C2A |
N3A |
355.4 |
359.9 |
C4A |
C5A |
C6A |
N1A |
12.8 |
0.0 |
N1A |
C6A |
C5A |
C7A |
191.4 |
180.0 |
C5A |
C6A |
N1A |
H6A |
180.0 |
180.0 |
N3A |
C2A |
CM2 |
HM21 |
237.4 |
270.0 |
N3A |
C2A |
CM2 |
HM22 |
357.4 |
30.0 |
N3A |
C2A |
CM2 |
HM23 |
117.3 |
150.0 |
CM2 |
C2A |
N3A |
N1A |
180.0 |
180.0 |
N3A |
C2A |
N1A |
C6A |
355.4 |
359.9 |
C2A |
N3A |
C4A |
N4A |
184.5 |
180.0 |
C2A |
N3A |
C4A |
C5A |
5.1 |
359.9 |
N4A |
C4A |
N3A |
C5A |
179.4 |
180.0 |
N3A |
C4A |
N4A |
H41N |
297.4 |
0.0 |
N3A |
C4A |
N4A |
H42N |
57.4 |
179.9 |
N3A |
C4A |
C5A |
C6A |
347.0 |
0.0 |
N3A |
C4A |
C5A |
C7A |
168.4 |
180.0 |
N3A |
C4A |
N4A |
C5A |
180.6 |
180.0 |
N4A |
C4A |
C5A |
C6A |
167.6 |
180.0 |
N4A |
C4A |
C5A |
C7A |
349.0 |
360.0 |
H41N |
N4A |
C4A |
H42N |
240.0 |
180.1 |
N3 |
C7A |
C5A |
C4A |
251.2 |
82.6 |
N1A |
C6A |
C5A |
C4A |
12.8 |
0.0 |
N3A |
C4A |
C5A |
N4A |
179.4 |
180.0 |
C5A |
C4A |
N4A |
H41N |
116.8 |
180.1 |
C5A |
C4A |
N4A |
H42N |
236.8 |
360.0 |
C6A |
C5A |
C4A |
C7A |
178.6 |
180.0 |
C4A |
C5A |
C6A |
H6A |
192.8 |
180.0 |
C4A |
C5A |
C7A |
H7A1 |
131.2 |
322.6 |
C4A |
C5A |
C7A |
H7A2 |
9.5 |
202.6 |
H41N |
N4A |
C4A |
C5A |
116.8 |
180.1 |
C4A |
N4A |
H41N |
H42N |
120.0 |
179.9 |
H42N |
N4A |
C4A |
C5A |
236.8 |
360.0 |
C4A |
N4A |
H42N |
H41N |
240.0 |
180.1 |
N3 |
C7A |
C5A |
C6A |
72.6 |
262.6 |
N1A |
C6A |
C5A |
H6A |
180.0 |
180.0 |
C4A |
C5A |
C6A |
C7A |
181.4 |
180.0 |
C6A |
C5A |
C7A |
H7A1 |
312.6 |
142.6 |
C6A |
C5A |
C7A |
H7A2 |
190.9 |
22.6 |
N3 |
C7A |
C5A |
H7A1 |
120.0 |
120.0 |
N3 |
C7A |
C5A |
H7A2 |
241.7 |
240.0 |
C4A |
C5A |
C7A |
C6A |
178.5 |
180.0 |
C7A |
C5A |
C6A |
H6A |
11.4 |
360.0 |
H7A1 |
C7A |
C5A |
H7A2 |
121.7 |
119.9 |
N1A |
C6A |
H6A |
C5A |
180.0 |
180.0 |
H6A |
C6A |
C5A |
C7A |
11.4 |
360.0 |
N3 |
C7A |
H7A1 |
C5A |
236.9 |
240.0 |
N3 |
C7A |
H7A1 |
H7A2 |
118.4 |
120.0 |
C5A |
C7A |
H7A1 |
H7A2 |
241.6 |
240.1 |
N3 |
C7A |
H7A2 |
C5A |
122.1 |
120.0 |
N3 |
C7A |
H7A2 |
H7A1 |
241.1 |
240.0 |
C5A |
C7A |
H7A2 |
H7A1 |
118.9 |
120.0 |
O7 |
P1 |
O1 |
O2 |
246.0 |
120.0 |
O7 |
P1 |
O1 |
O3 |
116.8 |
240.0 |
O2 |
P1 |
O1 |
O3 |
230.8 |
120.0 |
O1 |
P1 |
O2 |
HO2 |
103.6 |
300.0 |
O1 |
P1 |
O3 |
HO3 |
67.6 |
180.0 |
O7 |
P1 |
O2 |
O1 |
117.1 |
240.0 |
O7 |
P1 |
O2 |
O3 |
244.7 |
120.0 |
O1 |
P1 |
O2 |
O3 |
127.6 |
240.0 |
O2 |
P1 |
O3 |
HO3 |
196.7 |
60.0 |
O7 |
P1 |
O3 |
O1 |
242.2 |
120.0 |
O7 |
P1 |
O3 |
O2 |
113.1 |
240.0 |
O1 |
P1 |
O3 |
O2 |
230.9 |
120.0 |
O3 |
P1 |
O2 |
HO2 |
336.0 |
60.0 |
HO2 |
O2 |
P1 |
O3 |
336.0 |
60.0 |