PDB Chemical Component TPS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CM2 C2A 1.466 1.507
CM2 HM21 1.100 1.091
CM2 HM22 1.100 1.090
CM2 HM23 1.100 1.089
N3 C2 1.341 1.290
N3 C4 1.374 1.318
N3 C7A 1.530 1.465
C2 S1 1.677 1.709
C2 H2 1.080 1.080
S1 C5 1.743 1.763
C5 C4 1.376 1.337
C5 C6 1.506 1.507
C4 CM4 1.491 1.507
CM4 HM41 1.100 1.090
CM4 HM42 1.100 1.090
CM4 HM43 1.100 1.090
C6 C7 1.490 1.530
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C7 O7 1.448 1.428
C7 H71 1.100 1.091
C7 H72 1.100 1.090
O7 P1 1.581 1.610
N1A C2A 1.369 1.316
N1A C6A 1.348 1.326
C2A N3A 1.290 1.318
N3A C4A 1.368 1.330
C4A N4A 1.332 1.385
C4A C5A 1.444 1.396
N4A H41N 1.000 0.970
N4A H42N 1.000 0.970
C5A C6A 1.366 1.381
C5A C7A 1.514 1.507
C6A H6A 1.080 1.080
C7A H7A1 1.099 1.090
C7A H7A2 1.100 1.091
P1 O1 1.479 1.479
P1 O2 1.500 1.610
P1 O3 1.492 1.610
O2 HO2 0.950 0.966
O3 HO3 0.950 0.967

Bond Angles for TPS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2A CM2 HM21 109.5 109.5
C2A CM2 HM22 109.4 109.5
C2A CM2 HM23 109.5 109.5
CM2 C2A N1A 115.0 119.1
CM2 C2A N3A 120.5 119.1
HM21 CM2 HM22 109.5 109.4
HM21 CM2 HM23 109.5 109.5
HM22 CM2 HM23 109.5 109.5
C2 N3 C4 110.4 117.1
C2 N3 C7A 124.0 121.5
N3 C2 S1 115.2 110.2
N3 C2 H2 122.4 124.9
C4 N3 C7A 125.6 121.4
N3 C4 C5 114.9 114.5
N3 C4 CM4 118.2 122.8
N3 C7A C5A 113.3 109.5
N3 C7A H7A1 108.2 109.5
N3 C7A H7A2 107.3 109.5
S1 C2 H2 122.4 124.9
C2 S1 C5 90.3 90.3
S1 C5 C4 108.9 107.9
S1 C5 C6 123.2 126.0
C4 C5 C6 127.8 126.1
C5 C4 CM4 125.6 122.7
C5 C6 C7 115.3 109.5
C5 C6 H61 107.6 109.5
C5 C6 H62 106.2 109.4
C4 CM4 HM41 109.5 109.5
C4 CM4 HM42 109.5 109.4
C4 CM4 HM43 109.5 109.5
HM41 CM4 HM42 109.4 109.4
HM41 CM4 HM43 109.5 109.5
HM42 CM4 HM43 109.5 109.5
C7 C6 H61 107.6 109.5
C7 C6 H62 106.2 109.5
C6 C7 O7 116.1 109.5
C6 C7 H71 107.3 109.4
C6 C7 H72 105.8 109.5
H61 C6 H62 114.2 109.5
O7 C7 H71 107.3 109.5
O7 C7 H72 105.8 109.5
C7 O7 P1 127.1 123.0
H71 C7 H72 114.8 109.4
O7 P1 O1 108.4 109.5
O7 P1 O2 103.2 109.5
O7 P1 O3 106.8 109.4
C2A N1A C6A 117.0 121.0
N1A C2A N3A 124.5 121.9
N1A C6A C5A 122.3 119.1
N1A C6A H6A 118.9 120.5
C2A N3A C4A 120.0 120.7
N3A C4A N4A 119.2 120.5
N3A C4A C5A 118.2 118.9
N4A C4A C5A 122.6 120.6
C4A N4A H41N 109.5 120.0
C4A N4A H42N 109.5 120.0
C4A C5A C6A 116.6 118.4
C4A C5A C7A 121.9 120.8
H41N N4A H42N 109.5 120.0
C6A C5A C7A 121.5 120.8
C5A C6A H6A 118.9 120.4
C5A C7A H7A1 108.2 109.5
C5A C7A H7A2 107.3 109.4
H7A1 C7A H7A2 112.5 109.4
O1 P1 O2 113.5 109.5
O1 P1 O3 110.6 109.5
O2 P1 O3 113.7 109.5
P1 O2 HO2 109.5 114.0
P1 O3 HO3 109.5 114.1

Torsion Angles for TPS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HM21 CM2 C2A HM22 240.0 240.0
HM21 CM2 C2A HM23 120.0 120.0
HM22 CM2 C2A HM23 240.0 240.0
CM2 C2A N1A C6A 175.4 180.0
N1A C2A CM2 N3A 180.0 180.0
CM2 C2A N3A C4A 184.0 180.1
C2A CM2 HM21 HM22 120.0 120.0
C2A CM2 HM21 HM23 240.0 240.0
HM21 CM2 C2A N1A 57.4 90.0
HM21 CM2 C2A N3A 237.4 270.0
HM22 CM2 HM21 HM23 120.0 120.0
C2A CM2 HM22 HM21 240.0 240.0
C2A CM2 HM22 HM23 120.0 120.0
HM22 CM2 C2A N1A 177.4 209.9
HM22 CM2 C2A N3A 357.4 30.0
HM21 CM2 HM22 HM23 240.0 240.0
C2A CM2 HM23 HM21 120.0 120.0
C2A CM2 HM23 HM22 240.0 240.0
HM23 CM2 C2A N1A 297.3 330.0
HM23 CM2 C2A N3A 117.3 150.0
HM21 CM2 HM23 HM22 120.0 119.9
C4 N3 C2 C7A 181.9 180.3
C2 N3 C4 C5 354.0 360.0
C2 N3 C4 CM4 186.2 180.0
C2 N3 C7A C5A 266.5 268.5
C2 N3 C7A H7A1 26.5 28.5
C2 N3 C7A H7A2 148.2 148.5
S1 C2 N3 H2 180.0 180.0
N3 C2 S1 C5 358.4 360.0
C2 N3 C4 C7A 178.0 179.7
C4 N3 C2 S1 4.5 0.0
C4 N3 C2 H2 184.5 180.0
C4 N3 C7A C5A 84.3 88.2
C4 N3 C7A H7A1 204.3 208.3
C4 N3 C7A H7A2 326.0 328.2
S1 C5 C4 N3 4.7 0.0
N3 C4 C5 C6 184.9 180.0
C5 C4 N3 CM4 167.8 180.0
N3 C4 CM4 HM41 345.7 95.6
N3 C4 CM4 HM42 105.6 215.5
N3 C4 CM4 HM43 225.7 335.5
C2 N3 C7A C4 182.2 180.3
C7A N3 C2 S1 182.6 179.7
C7A N3 C2 H2 2.6 359.7
C7A N3 C4 C5 176.0 180.3
C7A N3 C4 CM4 8.2 0.2
C4A C5A C7A N3 251.2 82.6
C6A C5A C7A N3 72.6 262.6
C5A C7A N3 H7A1 240.0 240.0
C5A C7A N3 H7A2 118.3 120.0
H7A1 C7A N3 H7A2 238.3 240.0
S1 C2 N3 C4 4.5 0.0
S1 C2 N3 C7A 182.6 179.7
N3 C2 S1 H2 180.0 180.0
C2 S1 C5 C4 358.3 360.0
C2 S1 C5 C6 178.1 180.0
H2 C2 N3 C4 184.5 180.0
H2 C2 N3 C7A 2.6 359.7
N3 C2 H2 S1 180.0 180.0
H2 C2 S1 C5 178.4 180.0
N3 C4 C5 S1 4.7 0.0
C5 S1 C2 H2 178.4 180.0
C4 C5 S1 C6 180.2 180.0
S1 C5 C4 CM4 171.5 180.0
S1 C5 C6 C7 84.3 270.0
S1 C5 C6 H61 204.3 30.0
S1 C5 C6 H62 327.0 150.0
C5 C4 N3 C7A 176.0 180.3
N3 C4 C5 CM4 193.3 180.0
S1 C5 C4 C6 179.8 180.0
C4 C5 C6 C7 264.1 90.0
C4 C5 C6 H61 24.1 210.0
C4 C5 C6 H62 146.8 330.0
C5 C4 CM4 HM41 179.3 275.6
C5 C4 CM4 HM42 299.3 35.5
C5 C4 CM4 HM43 59.3 155.5
S1 C5 C6 C4 180.2 180.0
C6 C5 C4 CM4 351.7 0.1
C7 C6 C5 H61 240.0 240.0
C7 C6 C5 H62 117.3 120.0
C5 C6 C7 O7 177.4 180.0
C5 C6 C7 H71 297.4 300.1
C5 C6 C7 H72 60.4 59.9
H61 C6 C5 H62 237.4 240.0
CM4 C4 N3 C7A 8.2 0.2
N3 C4 CM4 C5 166.4 180.0
CM4 C4 C5 C6 351.7 0.1
HM41 CM4 C4 HM42 240.0 240.1
HM41 CM4 C4 HM43 120.0 120.1
HM42 CM4 C4 HM43 240.0 240.0
C4 CM4 HM41 HM42 120.0 119.9
C4 CM4 HM41 HM43 240.0 239.9
HM42 CM4 HM41 HM43 120.0 120.0
C4 CM4 HM42 HM41 240.0 240.0
C4 CM4 HM42 HM43 120.0 120.0
HM41 CM4 HM42 HM43 240.0 240.0
C4 CM4 HM43 HM41 120.0 120.1
C4 CM4 HM43 HM42 240.0 240.0
HM41 CM4 HM43 HM42 120.0 119.9
C5 C6 C7 H61 120.0 120.0
C5 C6 C7 H62 242.6 240.0
H61 C6 C7 H62 122.6 120.0
O7 C7 C6 H71 240.0 240.0
O7 C7 C6 H72 117.0 120.1
C6 C7 O7 P1 137.0 180.0
H71 C7 C6 H72 236.9 240.1
C5 C6 H61 C7 235.2 240.0
C5 C6 H61 H62 117.6 120.0
C7 C6 H61 H62 242.4 240.0
H61 C6 C7 O7 57.4 60.0
H61 C6 C7 H71 177.4 180.0
H61 C6 C7 H72 300.4 299.9
C5 C6 H62 C7 123.3 120.0
C5 C6 H62 H61 241.6 240.0
C7 C6 H62 H61 118.4 120.0
H62 C6 C7 O7 294.8 300.0
H62 C6 C7 H71 54.7 60.0
H62 C6 C7 H72 177.8 179.9
O7 C7 C6 H61 57.4 60.0
O7 C7 C6 H62 294.8 300.0
C6 C7 O7 H71 120.0 120.0
C6 C7 O7 H72 243.0 240.0
H71 C7 O7 H72 123.0 120.0
C7 O7 P1 O1 303.2 55.0
C7 O7 P1 O2 182.5 175.0
C7 O7 P1 O3 62.5 294.9
H71 C7 C6 H61 177.4 180.0
H71 C7 C6 H62 54.7 60.0
C6 C7 H71 O7 234.6 240.0
C6 C7 H71 H72 117.3 119.9
O7 C7 H71 H72 242.7 240.0
H71 C7 O7 P1 17.1 60.0
H72 C7 C6 H61 300.4 299.9
H72 C7 C6 H62 177.8 179.9
C6 C7 H72 O7 123.7 120.1
C6 C7 H72 H71 241.8 240.1
O7 C7 H72 H71 118.2 120.0
H72 C7 O7 P1 254.0 300.1
P1 O7 C7 H71 17.1 60.0
P1 O7 C7 H72 254.0 300.1
O1 P1 O7 O2 120.7 240.0
O1 P1 O7 O3 240.7 120.0
O2 P1 O7 O3 120.1 240.0
O7 P1 O2 HO2 220.7 180.0
O7 P1 O3 HO3 309.7 300.0
N1A C2A CM2 HM21 57.4 90.0
N1A C2A CM2 HM22 177.4 209.9
N1A C2A CM2 HM23 297.3 330.0
CM2 C2A N1A N3A 180.0 180.0
C2A N1A C6A C5A 355.6 360.0
C2A N1A C6A H6A 175.6 180.0
N1A C2A N3A C4A 4.0 0.1
C6A N1A C2A N3A 355.4 359.9
C4A C5A C6A N1A 12.8 0.0
N1A C6A C5A C7A 191.4 180.0
C5A C6A N1A H6A 180.0 180.0
N3A C2A CM2 HM21 237.4 270.0
N3A C2A CM2 HM22 357.4 30.0
N3A C2A CM2 HM23 117.3 150.0
CM2 C2A N3A N1A 180.0 180.0
N3A C2A N1A C6A 355.4 359.9
C2A N3A C4A N4A 184.5 180.0
C2A N3A C4A C5A 5.1 359.9
N4A C4A N3A C5A 179.4 180.0
N3A C4A N4A H41N 297.4 0.0
N3A C4A N4A H42N 57.4 179.9
N3A C4A C5A C6A 347.0 0.0
N3A C4A C5A C7A 168.4 180.0
N3A C4A N4A C5A 180.6 180.0
N4A C4A C5A C6A 167.6 180.0
N4A C4A C5A C7A 349.0 360.0
H41N N4A C4A H42N 240.0 180.1
N3 C7A C5A C4A 251.2 82.6
N1A C6A C5A C4A 12.8 0.0
N3A C4A C5A N4A 179.4 180.0
C5A C4A N4A H41N 116.8 180.1
C5A C4A N4A H42N 236.8 360.0
C6A C5A C4A C7A 178.6 180.0
C4A C5A C6A H6A 192.8 180.0
C4A C5A C7A H7A1 131.2 322.6
C4A C5A C7A H7A2 9.5 202.6
H41N N4A C4A C5A 116.8 180.1
C4A N4A H41N H42N 120.0 179.9
H42N N4A C4A C5A 236.8 360.0
C4A N4A H42N H41N 240.0 180.1
N3 C7A C5A C6A 72.6 262.6
N1A C6A C5A H6A 180.0 180.0
C4A C5A C6A C7A 181.4 180.0
C6A C5A C7A H7A1 312.6 142.6
C6A C5A C7A H7A2 190.9 22.6
N3 C7A C5A H7A1 120.0 120.0
N3 C7A C5A H7A2 241.7 240.0
C4A C5A C7A C6A 178.5 180.0
C7A C5A C6A H6A 11.4 360.0
H7A1 C7A C5A H7A2 121.7 119.9
N1A C6A H6A C5A 180.0 180.0
H6A C6A C5A C7A 11.4 360.0
N3 C7A H7A1 C5A 236.9 240.0
N3 C7A H7A1 H7A2 118.4 120.0
C5A C7A H7A1 H7A2 241.6 240.1
N3 C7A H7A2 C5A 122.1 120.0
N3 C7A H7A2 H7A1 241.1 240.0
C5A C7A H7A2 H7A1 118.9 120.0
O7 P1 O1 O2 246.0 120.0
O7 P1 O1 O3 116.8 240.0
O2 P1 O1 O3 230.8 120.0
O1 P1 O2 HO2 103.6 300.0
O1 P1 O3 HO3 67.6 180.0
O7 P1 O2 O1 117.1 240.0
O7 P1 O2 O3 244.7 120.0
O1 P1 O2 O3 127.6 240.0
O2 P1 O3 HO3 196.7 60.0
O7 P1 O3 O1 242.2 120.0
O7 P1 O3 O2 113.1 240.0
O1 P1 O3 O2 230.9 120.0
O3 P1 O2 HO2 336.0 60.0
HO2 O2 P1 O3 336.0 60.0