PDB Chemical Component SXX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SXX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.441 |
1.392 |
| C1 |
C6 |
1.424 |
1.393 |
| C1 |
O7 |
1.367 |
1.359 |
| C2 |
C3 |
1.400 |
1.382 |
| C2 |
O9 |
1.341 |
1.359 |
| C3 |
C4 |
1.416 |
1.400 |
| C3 |
H3 |
1.104 |
1.080 |
| C4 |
C5 |
1.418 |
1.398 |
| C4 |
C10 |
1.487 |
1.469 |
| C5 |
C6 |
1.409 |
1.382 |
| C5 |
H5 |
1.103 |
1.079 |
| C6 |
O8 |
1.374 |
1.361 |
| O7 |
H7 |
0.950 |
0.967 |
| O8 |
C14 |
1.456 |
1.429 |
| O9 |
C15 |
1.432 |
1.429 |
| C10 |
C11 |
1.340 |
1.350 |
| C10 |
H10 |
1.103 |
1.080 |
| C11 |
C12 |
1.497 |
1.417 |
| C11 |
H11 |
1.103 |
1.080 |
| C12 |
O13 |
1.342 |
1.349 |
| C12 |
O14 |
1.250 |
1.217 |
| O13 |
H13 |
0.951 |
0.967 |
| C15 |
H151 |
1.115 |
1.091 |
| C15 |
H152 |
1.115 |
1.090 |
| C15 |
H153 |
1.115 |
1.090 |
| C14 |
H141 |
1.115 |
1.090 |
| C14 |
H142 |
1.115 |
1.089 |
| C14 |
H143 |
1.115 |
1.089 |
Bond Angles for SXX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.2 |
120.1 |
| C2 |
C1 |
O7 |
122.2 |
119.9 |
| C1 |
C2 |
C3 |
120.7 |
120.1 |
| C1 |
C2 |
O9 |
113.4 |
120.0 |
| C6 |
C1 |
O7 |
118.5 |
120.0 |
| C1 |
C6 |
C5 |
119.9 |
120.1 |
| C1 |
C6 |
O8 |
114.7 |
119.9 |
| C1 |
O7 |
H7 |
122.2 |
106.8 |
| C3 |
C2 |
O9 |
125.9 |
120.0 |
| C2 |
C3 |
C4 |
119.1 |
119.9 |
| C2 |
C3 |
H3 |
120.4 |
120.0 |
| C2 |
O9 |
C15 |
119.3 |
106.8 |
| C4 |
C3 |
H3 |
120.4 |
120.1 |
| C3 |
C4 |
C5 |
121.1 |
119.9 |
| C3 |
C4 |
C10 |
115.8 |
120.0 |
| C5 |
C4 |
C10 |
123.1 |
120.1 |
| C4 |
C5 |
C6 |
119.8 |
119.9 |
| C4 |
C5 |
H5 |
120.1 |
120.1 |
| C4 |
C10 |
C11 |
123.7 |
120.0 |
| C4 |
C10 |
H10 |
118.2 |
120.0 |
| C6 |
C5 |
H5 |
120.1 |
120.0 |
| C5 |
C6 |
O8 |
125.4 |
119.9 |
| C6 |
O8 |
C14 |
121.5 |
106.8 |
| O8 |
C14 |
H141 |
121.5 |
109.4 |
| O8 |
C14 |
H142 |
107.9 |
109.4 |
| O8 |
C14 |
H143 |
107.9 |
109.4 |
| O9 |
C15 |
H151 |
119.3 |
109.5 |
| O9 |
C15 |
H152 |
108.7 |
109.5 |
| O9 |
C15 |
H153 |
108.7 |
109.5 |
| C11 |
C10 |
H10 |
118.1 |
120.0 |
| C10 |
C11 |
C12 |
120.3 |
120.1 |
| C10 |
C11 |
H11 |
119.9 |
120.0 |
| C12 |
C11 |
H11 |
119.8 |
120.0 |
| C11 |
C12 |
O13 |
113.7 |
120.1 |
| C11 |
C12 |
O14 |
125.0 |
120.0 |
| O13 |
C12 |
O14 |
121.2 |
120.0 |
| C12 |
O13 |
H13 |
113.7 |
106.8 |
| H151 |
C15 |
H152 |
108.7 |
109.5 |
| H151 |
C15 |
H153 |
108.7 |
109.5 |
| H152 |
C15 |
H153 |
101.3 |
109.4 |
| H141 |
C14 |
H142 |
107.9 |
109.5 |
| H141 |
C14 |
H143 |
107.9 |
109.5 |
| H142 |
C14 |
H143 |
101.9 |
109.5 |
Torsion Angles for SXX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
O7 |
181.8 |
179.5 |
| C2 |
C1 |
C6 |
C5 |
358.3 |
0.5 |
| C2 |
C1 |
C6 |
O8 |
177.0 |
180.2 |
| C2 |
C1 |
O7 |
H7 |
180.0 |
269.5 |
| C3 |
C2 |
C1 |
O9 |
177.7 |
179.7 |
| C1 |
C2 |
C3 |
C4 |
358.0 |
0.3 |
| C1 |
C2 |
C3 |
H3 |
178.1 |
180.3 |
| C1 |
C2 |
O9 |
C15 |
175.5 |
179.7 |
| C2 |
C1 |
C6 |
O7 |
178.3 |
180.5 |
| C6 |
C1 |
C2 |
C3 |
0.8 |
359.5 |
| C6 |
C1 |
C2 |
O9 |
183.1 |
179.8 |
| C6 |
C1 |
O7 |
H7 |
358.2 |
90.0 |
| C4 |
C5 |
C6 |
C1 |
3.9 |
359.7 |
| C1 |
C6 |
C5 |
H5 |
183.9 |
179.8 |
| C5 |
C6 |
C1 |
O8 |
181.3 |
180.3 |
| C1 |
C6 |
O8 |
C14 |
197.3 |
180.3 |
| C2 |
C1 |
O7 |
C6 |
181.8 |
179.5 |
| O7 |
C1 |
C2 |
C3 |
179.0 |
180.0 |
| O7 |
C1 |
C2 |
O9 |
1.3 |
0.3 |
| O7 |
C1 |
C6 |
C5 |
180.0 |
180.0 |
| O7 |
C1 |
C6 |
O8 |
358.8 |
359.8 |
| C3 |
C2 |
C1 |
C6 |
0.8 |
359.5 |
| C3 |
C2 |
C1 |
O7 |
179.0 |
180.0 |
| C1 |
C2 |
C3 |
O9 |
182.6 |
180.3 |
| C3 |
C2 |
O9 |
C15 |
357.9 |
0.1 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
4.1 |
360.0 |
| C2 |
C3 |
C4 |
C10 |
182.6 |
180.0 |
| O9 |
C2 |
C1 |
C6 |
183.1 |
179.8 |
| O9 |
C2 |
C1 |
O7 |
1.3 |
0.3 |
| C1 |
C2 |
O9 |
C3 |
177.6 |
179.7 |
| O9 |
C2 |
C3 |
C4 |
175.5 |
180.0 |
| O9 |
C2 |
C3 |
H3 |
355.5 |
359.9 |
| C2 |
O9 |
C15 |
H151 |
180.0 |
180.0 |
| C2 |
O9 |
C15 |
H152 |
54.7 |
300.0 |
| C2 |
O9 |
C15 |
H153 |
305.2 |
59.9 |
| C4 |
C3 |
C2 |
O9 |
175.5 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
C10 |
181.5 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
354.9 |
0.0 |
| C3 |
C4 |
C5 |
H5 |
174.9 |
180.0 |
| C3 |
C4 |
C10 |
C11 |
180.3 |
180.0 |
| C3 |
C4 |
C10 |
H10 |
0.2 |
360.0 |
| H3 |
C3 |
C2 |
O9 |
355.5 |
359.9 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
184.1 |
180.0 |
| H3 |
C3 |
C4 |
C10 |
2.6 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
3.9 |
359.7 |
| C5 |
C4 |
C3 |
H3 |
184.1 |
180.0 |
| C3 |
C4 |
C5 |
C10 |
178.4 |
180.0 |
| C5 |
C4 |
C10 |
C11 |
358.7 |
0.0 |
| C5 |
C4 |
C10 |
H10 |
178.7 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
O8 |
185.3 |
180.0 |
| C10 |
C4 |
C3 |
H3 |
2.6 |
0.0 |
| C3 |
C4 |
C10 |
C5 |
181.5 |
180.0 |
| C10 |
C4 |
C5 |
C6 |
176.5 |
180.0 |
| C10 |
C4 |
C5 |
H5 |
356.5 |
359.9 |
| C11 |
C10 |
C4 |
H10 |
180.0 |
180.0 |
| C4 |
C10 |
C11 |
C12 |
179.6 |
180.0 |
| C4 |
C10 |
C11 |
H11 |
359.6 |
359.9 |
| C5 |
C6 |
C1 |
O7 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
O8 |
178.6 |
179.7 |
| C6 |
C5 |
C4 |
C10 |
176.5 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C5 |
C6 |
O8 |
C14 |
16.0 |
360.0 |
| H5 |
C5 |
C4 |
C10 |
356.5 |
359.9 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
O8 |
5.3 |
0.1 |
| O8 |
C6 |
C1 |
O7 |
358.8 |
359.8 |
| C1 |
C6 |
O8 |
C5 |
181.3 |
180.3 |
| O8 |
C6 |
C5 |
H5 |
5.3 |
0.1 |
| C6 |
O8 |
C14 |
H141 |
180.0 |
180.0 |
| C6 |
O8 |
C14 |
H142 |
54.7 |
300.0 |
| C6 |
O8 |
C14 |
H143 |
305.3 |
60.0 |
| H141 |
C14 |
O8 |
H142 |
125.3 |
240.0 |
| H141 |
C14 |
O8 |
H143 |
234.8 |
120.0 |
| H142 |
C14 |
O8 |
H143 |
109.5 |
240.0 |
| H151 |
C15 |
O9 |
H152 |
125.3 |
240.0 |
| H151 |
C15 |
O9 |
H153 |
234.8 |
120.0 |
| H152 |
C15 |
O9 |
H153 |
109.5 |
240.0 |
| C4 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.1 |
| C10 |
C11 |
C12 |
O13 |
181.3 |
180.0 |
| C10 |
C11 |
C12 |
O14 |
1.9 |
0.0 |
| C4 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
C12 |
359.6 |
0.0 |
| H10 |
C10 |
C11 |
H11 |
179.6 |
179.9 |
| C12 |
C11 |
C10 |
H10 |
359.6 |
0.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
179.9 |
| O13 |
C12 |
C11 |
O14 |
179.3 |
180.0 |
| C11 |
C12 |
O13 |
H13 |
180.0 |
180.0 |
| H11 |
C11 |
C10 |
H10 |
179.6 |
179.9 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.1 |
| H11 |
C11 |
C12 |
O13 |
1.2 |
0.1 |
| H11 |
C11 |
C12 |
O14 |
181.9 |
180.1 |
| O13 |
C12 |
C11 |
H11 |
1.2 |
0.1 |
| C11 |
C12 |
O13 |
O14 |
180.6 |
180.0 |
| O14 |
C12 |
C11 |
H11 |
181.9 |
180.1 |
| C11 |
C12 |
O14 |
O13 |
179.3 |
180.0 |
| O14 |
C12 |
O13 |
H13 |
359.4 |
360.0 |
| H13 |
O13 |
C12 |
O14 |
359.4 |
360.0 |
| O9 |
C15 |
H151 |
H152 |
234.7 |
120.0 |
| O9 |
C15 |
H151 |
H153 |
125.2 |
239.9 |
| H152 |
C15 |
H151 |
H153 |
250.5 |
119.9 |
| O9 |
C15 |
H152 |
H151 |
131.3 |
240.0 |
| O9 |
C15 |
H152 |
H153 |
245.6 |
120.0 |
| H151 |
C15 |
H152 |
H153 |
114.4 |
240.0 |
| O9 |
C15 |
H153 |
H151 |
228.8 |
120.0 |
| O9 |
C15 |
H153 |
H152 |
114.4 |
240.0 |
| H151 |
C15 |
H153 |
H152 |
245.6 |
120.0 |
| O8 |
C14 |
H141 |
H142 |
234.7 |
119.9 |
| O8 |
C14 |
H141 |
H143 |
125.2 |
240.1 |
| H142 |
C14 |
H141 |
H143 |
250.5 |
120.1 |
| O8 |
C14 |
H142 |
H141 |
133.0 |
240.1 |
| O8 |
C14 |
H142 |
H143 |
246.5 |
119.9 |
| H141 |
C14 |
H142 |
H143 |
113.5 |
239.9 |
| O8 |
C14 |
H143 |
H141 |
227.1 |
119.9 |
| O8 |
C14 |
H143 |
H142 |
113.5 |
240.1 |
| H141 |
C14 |
H143 |
H142 |
246.5 |
120.1 |