PDB Chemical Component SS1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SS1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
C1 |
1.471 |
1.429 |
| O1 |
HO1 |
0.950 |
0.967 |
| C1 |
C2 |
1.544 |
1.507 |
| C1 |
C8 |
1.548 |
1.531 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
C3 |
1.394 |
1.383 |
| C2 |
C7 |
1.457 |
1.382 |
| C3 |
C4 |
1.409 |
1.382 |
| C3 |
H3 |
1.080 |
1.080 |
| C4 |
C5 |
1.431 |
1.383 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
C6 |
1.416 |
1.382 |
| C5 |
H5 |
1.079 |
1.080 |
| C6 |
C7 |
1.405 |
1.382 |
| C6 |
H6 |
1.080 |
1.081 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
H81 |
1.100 |
1.090 |
| C8 |
H82 |
1.100 |
1.089 |
| C8 |
H83 |
1.101 |
1.090 |
Bond Angles for SS1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
O1 |
HO1 |
109.5 |
114.0 |
| O1 |
C1 |
C2 |
107.1 |
109.5 |
| O1 |
C1 |
C8 |
106.3 |
109.5 |
| O1 |
C1 |
H1 |
115.1 |
109.4 |
| C2 |
C1 |
C8 |
115.0 |
109.5 |
| C2 |
C1 |
H1 |
106.4 |
109.5 |
| C1 |
C2 |
C3 |
122.2 |
120.0 |
| C1 |
C2 |
C7 |
119.3 |
120.1 |
| C8 |
C1 |
H1 |
107.2 |
109.5 |
| C1 |
C8 |
H81 |
109.5 |
109.5 |
| C1 |
C8 |
H82 |
109.5 |
109.5 |
| C1 |
C8 |
H83 |
109.5 |
109.4 |
| C3 |
C2 |
C7 |
118.5 |
120.0 |
| C2 |
C3 |
C4 |
122.1 |
120.0 |
| C2 |
C3 |
H3 |
119.0 |
120.0 |
| C2 |
C7 |
C6 |
119.8 |
120.0 |
| C2 |
C7 |
H7 |
120.1 |
119.9 |
| C4 |
C3 |
H3 |
118.9 |
120.0 |
| C3 |
C4 |
C5 |
119.3 |
120.0 |
| C3 |
C4 |
H4 |
120.3 |
120.0 |
| C5 |
C4 |
H4 |
120.3 |
120.0 |
| C4 |
C5 |
C6 |
119.6 |
120.0 |
| C4 |
C5 |
H5 |
120.2 |
120.0 |
| C6 |
C5 |
H5 |
120.2 |
120.0 |
| C5 |
C6 |
C7 |
120.6 |
120.1 |
| C5 |
C6 |
H6 |
119.7 |
120.0 |
| C7 |
C6 |
H6 |
119.7 |
120.0 |
| C6 |
C7 |
H7 |
120.1 |
120.1 |
| H81 |
C8 |
H82 |
109.5 |
109.5 |
| H81 |
C8 |
H83 |
109.4 |
109.5 |
| H82 |
C8 |
H83 |
109.5 |
109.5 |
Torsion Angles for SS1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O1 |
C8 |
123.4 |
120.0 |
| C2 |
C1 |
O1 |
H1 |
241.9 |
239.9 |
| O1 |
C1 |
C2 |
C3 |
221.5 |
145.0 |
| O1 |
C1 |
C2 |
C7 |
39.9 |
324.8 |
| C8 |
C1 |
O1 |
H1 |
118.5 |
120.0 |
| O1 |
C1 |
C8 |
H81 |
329.1 |
60.0 |
| O1 |
C1 |
C8 |
H82 |
89.1 |
180.0 |
| O1 |
C1 |
C8 |
H83 |
209.1 |
300.0 |
| HO1 |
O1 |
C1 |
C2 |
193.5 |
59.9 |
| HO1 |
O1 |
C1 |
C8 |
70.1 |
300.0 |
| HO1 |
O1 |
C1 |
H1 |
311.6 |
180.0 |
| C2 |
C1 |
O1 |
HO1 |
193.5 |
59.9 |
| O1 |
C1 |
C2 |
C8 |
242.1 |
240.0 |
| O1 |
C1 |
C2 |
H1 |
123.6 |
120.0 |
| C8 |
C1 |
C2 |
H1 |
241.5 |
240.0 |
| C2 |
C1 |
C8 |
H81 |
210.7 |
300.1 |
| C2 |
C1 |
C8 |
H82 |
330.7 |
60.0 |
| C2 |
C1 |
C8 |
H83 |
90.7 |
180.1 |
| C3 |
C2 |
C1 |
C7 |
181.6 |
180.2 |
| C1 |
C2 |
C3 |
C4 |
178.8 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
358.8 |
0.1 |
| C1 |
C2 |
C7 |
C6 |
181.1 |
179.8 |
| C1 |
C2 |
C7 |
H7 |
1.1 |
360.0 |
| C8 |
C1 |
O1 |
HO1 |
70.1 |
300.0 |
| O1 |
C1 |
C8 |
C2 |
118.4 |
120.0 |
| O1 |
C1 |
C8 |
H1 |
236.4 |
240.0 |
| C2 |
C1 |
C8 |
H1 |
118.1 |
120.1 |
| C8 |
C1 |
C2 |
C3 |
339.4 |
265.0 |
| C8 |
C1 |
C2 |
C7 |
157.9 |
84.7 |
| H81 |
C8 |
C1 |
H82 |
240.0 |
240.0 |
| H81 |
C8 |
C1 |
H83 |
120.0 |
120.0 |
| H82 |
C8 |
C1 |
H83 |
240.0 |
240.0 |
| H1 |
C1 |
O1 |
HO1 |
311.6 |
180.0 |
| O1 |
C1 |
H1 |
C2 |
241.5 |
240.0 |
| O1 |
C1 |
H1 |
C8 |
118.0 |
120.0 |
| C2 |
C1 |
H1 |
C8 |
236.5 |
240.0 |
| H1 |
C1 |
C2 |
C3 |
97.9 |
25.0 |
| H1 |
C1 |
C2 |
C7 |
276.4 |
204.8 |
| H1 |
C1 |
C8 |
H81 |
92.6 |
180.0 |
| H1 |
C1 |
C8 |
H82 |
212.7 |
300.0 |
| H1 |
C1 |
C8 |
H83 |
332.7 |
60.0 |
| C3 |
C2 |
C1 |
C8 |
339.4 |
265.0 |
| C3 |
C2 |
C1 |
H1 |
97.9 |
25.0 |
| C1 |
C2 |
C3 |
C7 |
178.5 |
179.8 |
| C3 |
C2 |
C7 |
C6 |
359.6 |
359.6 |
| C3 |
C2 |
C7 |
H7 |
179.6 |
179.8 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
0.4 |
0.1 |
| C2 |
C3 |
C4 |
H4 |
180.3 |
179.9 |
| C7 |
C2 |
C1 |
C8 |
157.9 |
84.7 |
| C7 |
C2 |
C1 |
H1 |
276.4 |
204.8 |
| C1 |
C2 |
C7 |
C3 |
181.5 |
180.2 |
| C7 |
C2 |
C3 |
C4 |
0.3 |
0.2 |
| C7 |
C2 |
C3 |
H3 |
180.3 |
180.3 |
| C5 |
C6 |
C7 |
C2 |
359.8 |
0.4 |
| C2 |
C7 |
C6 |
H6 |
179.9 |
180.2 |
| C6 |
C7 |
C2 |
H7 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
C7 |
0.3 |
0.2 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
359.1 |
359.9 |
| C3 |
C4 |
C5 |
H5 |
179.1 |
179.9 |
| H3 |
C3 |
C2 |
C7 |
180.3 |
180.3 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
| H3 |
C3 |
C4 |
C5 |
180.3 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
0.3 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
180.3 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
0.8 |
359.8 |
| C4 |
C5 |
C6 |
H6 |
180.8 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
0.3 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
179.1 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
359.1 |
0.0 |
| C2 |
C7 |
C6 |
C5 |
359.8 |
0.4 |
| C6 |
C5 |
C4 |
H4 |
179.1 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.8 |
| C5 |
C6 |
C7 |
H7 |
179.9 |
180.2 |
| H5 |
C5 |
C4 |
H4 |
359.1 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
180.8 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
0.8 |
0.0 |
| C2 |
C7 |
C6 |
H7 |
180.0 |
180.2 |
| C7 |
C6 |
C5 |
H5 |
180.8 |
179.8 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.2 |
| H6 |
C6 |
C5 |
H5 |
0.8 |
0.0 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.8 |
| H6 |
C6 |
C7 |
H7 |
359.9 |
0.0 |
| C2 |
C7 |
H7 |
C6 |
180.0 |
179.8 |
| H7 |
C7 |
C6 |
H6 |
359.9 |
0.0 |
| H81 |
C8 |
C1 |
H1 |
92.6 |
180.0 |
| C1 |
C8 |
H81 |
H82 |
120.0 |
120.0 |
| C1 |
C8 |
H81 |
H83 |
240.0 |
240.0 |
| H82 |
C8 |
H81 |
H83 |
120.0 |
120.0 |
| H82 |
C8 |
C1 |
H1 |
212.7 |
300.0 |
| C1 |
C8 |
H82 |
H81 |
240.0 |
240.0 |
| C1 |
C8 |
H82 |
H83 |
120.0 |
120.0 |
| H81 |
C8 |
H82 |
H83 |
240.0 |
240.0 |
| H83 |
C8 |
C1 |
H1 |
332.7 |
60.0 |
| C1 |
C8 |
H83 |
H81 |
120.0 |
120.0 |
| C1 |
C8 |
H83 |
H82 |
240.0 |
240.0 |
| H81 |
C8 |
H83 |
H82 |
120.0 |
120.0 |