PDB Chemical Component SLB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SLB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.477	1.506
C1	O1A	1.214	1.209
C1	O1B	1.218	1.342
C2	C3	1.512	1.529
C2	O2	1.421	1.430
C2	O6	1.415	1.427
C3	C4	1.527	1.533
C3	H32	1.115	1.089
C3	H31	1.114	1.090
C4	C5	1.542	1.532
C4	O4	1.401	1.429
C4	H4	1.116	1.090
C5	C6	1.525	1.530
C5	N5	1.482	1.464
C5	H5	1.114	1.089
C6	C7	1.511	1.530
C6	O6	1.410	1.425
C6	H6	1.115	1.089
C7	C8	1.525	1.530
C7	O7	1.415	1.428
C7	H7	1.114	1.089
C8	C9	1.516	1.530
C8	O8	1.410	1.428
C8	H8	1.115	1.089
C9	O9	1.410	1.429
C9	H92	1.114	1.090
C9	H91	1.114	1.089
C10	C11	1.494	1.507
C10	N5	1.311	1.348
C10	O10	1.203	1.212
C11	H111	1.114	1.090
C11	H113	1.115	1.090
C11	H112	1.114	1.090
N5	HN5	1.020	0.971
O1B	HO1B	0.949	0.966
O2	HO2	0.949	0.967
O4	HO4	0.950	0.967
O7	HO7	0.949	0.967
O8	HO8	0.950	0.967
O9	HO9	0.949	0.966

Bond Angles for SLB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1A	120.5	120.0
C2	C1	O1B	117.0	120.1
C1	C2	C3	114.5	109.5
C1	C2	O2	104.2	109.3
C1	C2	O6	101.8	109.4
O1A	C1	O1B	122.4	119.9
C1	O1B	HO1B	117.0	120.0
C3	C2	O2	109.4	109.4
C3	C2	O6	111.9	109.9
C2	C3	C4	108.8	109.0
C2	C3	H32	112.4	109.5
C2	C3	H31	112.4	109.5
O2	C2	O6	114.8	109.4
C2	O2	HO2	104.3	106.8
C2	O6	C6	117.6	107.7
C4	C3	H32	112.5	109.6
C4	C3	H31	112.5	109.6
C3	C4	C5	111.9	108.7
C3	C4	O4	103.2	109.7
C3	C4	H4	114.0	109.6
H32	C3	H31	98.0	109.6
C5	C4	O4	114.7	109.6
C5	C4	H4	102.3	109.6
C4	C5	C6	107.6	109.1
C4	C5	N5	120.1	109.5
C4	C5	H5	102.3	109.6
O4	C4	H4	111.2	109.6
C4	O4	HO4	103.2	106.8
C6	C5	N5	105.8	109.6
C6	C5	H5	117.5	109.5
C5	C6	C7	110.3	109.4
C5	C6	O6	113.4	109.9
C5	C6	H6	105.5	109.3
N5	C5	H5	104.3	109.5
C5	N5	C10	112.2	120.1
C5	N5	HN5	129.0	120.0
C7	C6	O6	107.0	109.4
C7	C6	H6	112.0	109.4
C6	C7	C8	106.8	109.5
C6	C7	O7	110.5	109.5
C6	C7	H7	111.5	109.5
O6	C6	H6	108.7	109.5
C8	C7	O7	112.2	109.4
C8	C7	H7	109.8	109.5
C7	C8	C9	115.3	109.5
C7	C8	O8	113.9	109.4
C7	C8	H8	100.2	109.5
O7	C7	H7	106.1	109.5
C7	O7	HO7	110.5	106.8
C9	C8	O8	102.5	109.5
C9	C8	H8	112.0	109.5
C8	C9	O9	110.5	109.5
C8	C9	H92	111.8	109.4
C8	C9	H91	111.8	109.5
O8	C8	H8	113.5	109.5
C8	O8	HO8	113.8	106.8
O9	C9	H92	111.8	109.5
O9	C9	H91	111.8	109.5
C9	O9	HO9	110.5	106.8
H92	C9	H91	98.7	109.5
C11	C10	N5	120.8	120.0
C11	C10	O10	120.0	120.0
C10	C11	H111	120.8	109.4
C10	C11	H113	108.1	109.5
C10	C11	H112	108.2	109.5
N5	C10	O10	118.7	119.9
C10	N5	HN5	118.8	119.9
H111	C11	H113	108.2	109.4
H111	C11	H112	108.2	109.5
H113	C11	H112	101.7	109.5

Torsion Angles for SLB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	C2	O1B	177.2	179.9
C2	C1	O1B	HO1B	180.0	179.9
C3	C2	C1	O2	240.6	240.2
C3	C2	C1	O6	120.9	120.4
C1	C2	C3	C4	191.7	178.7
C1	C2	C3	H32	316.9	58.8
C1	C2	C3	H31	66.4	298.5
O2	C2	C1	O6	240.3	240.3
C1	C2	O2	HO2	180.0	60.1
C1	C2	O6	C6	176.0	187.7
C2	C1	O1A	O1B	182.9	180.1
O1A	C1	C2	C3	313.4	120.0
O1A	C1	C2	O2	72.8	239.8
O1A	C1	C2	O6	192.5	359.6
O1A	C1	O1B	HO1B	2.8	0.1
C2	C1	O1B	O1A	177.1	179.9
O1B	C1	C2	C3	136.2	300.1
O1B	C1	C2	O2	255.6	60.0
O1B	C1	C2	O6	15.3	179.7
C3	C2	C1	O1A	313.4	120.0
C3	C2	C1	O1B	136.2	300.1
C1	C2	C3	O2	116.5	119.8
C1	C2	C3	O6	244.8	239.9
O2	C2	C3	O6	128.3	120.1
C3	C2	O2	HO2	302.8	180.0
C3	C2	O6	C6	53.3	67.5
C4	C3	C2	H32	234.7	119.9
C4	C3	C2	H31	125.3	240.2
C2	C3	C4	C5	56.5	53.7
C2	C3	C4	O4	180.4	173.5
C2	C3	C4	H4	301.1	293.9
H32	C3	C2	H31	250.6	120.2
O2	C2	C1	O1A	72.8	239.8
O2	C2	C1	O1B	255.6	60.0
C1	C2	O2	C3	237.2	240.1
C1	C2	O2	O6	110.5	119.8
C3	C2	O2	O6	233.3	239.6
O2	C2	C3	C4	75.1	58.9
O2	C2	C3	H32	200.4	299.0
O2	C2	C3	H31	309.9	178.7
O2	C2	O6	C6	288.0	307.4
O6	C2	C1	O1A	192.5	359.6
O6	C2	C1	O1B	15.3	179.7
C1	C2	O6	C3	122.7	120.2
C1	C2	O6	O2	248.1	240.3
C3	C2	O6	O2	125.4	120.1
O6	C2	C3	C4	306.8	298.8
O6	C2	C3	H32	72.1	178.9
O6	C2	C3	H31	181.5	58.7
O6	C2	O2	HO2	69.5	300.4
C5	C6	O6	C2	307.2	292.6
C7	C6	O6	C2	185.3	172.4
C2	O6	C6	H6	64.1	52.6
C4	C3	C2	O2	75.1	58.9
C4	C3	C2	O6	306.8	298.8
C2	C3	C4	H32	125.2	240.1
C2	C3	C4	H31	234.7	119.8
H32	C3	C4	H31	109.5	239.7
C5	C4	C3	O4	236.2	240.1
C5	C4	C3	H4	115.5	119.8
C3	C4	C5	C6	305.3	306.4
C3	C4	C5	N5	184.4	186.4
C3	C4	C5	H5	69.7	66.2
O4	C4	C3	H4	239.3	239.6
C3	C4	O4	HO4	180.0	60.6
H32	C3	C2	O2	200.4	299.0
H32	C3	C2	O6	72.1	178.9
C2	C3	H32	C4	236.8	119.6
C2	C3	H32	H31	118.3	239.9
C4	C3	H32	H31	241.6	120.3
H32	C3	C4	C5	291.3	173.6
H32	C3	C4	O4	55.1	293.4
H32	C3	C4	H4	175.8	53.8
H31	C3	C2	O2	309.9	178.7
H31	C3	C2	O6	181.5	58.7
C2	C3	H31	C4	123.2	240.5
C2	C3	H31	H32	241.7	120.2
C4	C3	H31	H32	118.4	239.7
H31	C3	C4	C5	181.8	293.9
H31	C3	C4	O4	305.6	53.7
H31	C3	C4	H4	66.3	174.1
C5	C4	C3	H32	291.3	173.6
C5	C4	C3	H31	181.8	293.9
C3	C4	C5	O4	117.1	119.9
C3	C4	C5	H4	237.6	240.3
O4	C4	C5	H4	120.5	120.3
C5	C4	O4	HO4	302.0	179.9
C6	C5	C4	N5	120.9	119.9
C6	C5	C4	H5	235.6	240.1
C4	C5	C6	C7	171.0	181.3
C4	C5	C6	O6	50.9	61.2
C4	C5	C6	H6	292.1	301.0
N5	C5	C4	H5	114.7	120.2
C4	C5	N5	C10	264.3	269.8
C4	C5	N5	HN5	84.3	89.8
O4	C4	C3	H32	55.1	293.4
O4	C4	C3	H31	305.6	53.7
C3	C4	O4	C5	238.0	240.7
C3	C4	O4	H4	122.6	120.4
C5	C4	O4	H4	244.6	239.7
O4	C4	C5	C6	188.2	186.4
O4	C4	C5	N5	67.3	66.5
O4	C4	C5	H5	312.6	306.3
H4	C4	C3	H32	175.8	53.8
H4	C4	C3	H31	66.3	174.1
C3	C4	H4	C5	121.0	119.2
C3	C4	H4	O4	243.9	239.5
C5	C4	H4	O4	122.9	120.3
H4	C4	C5	C6	67.7	66.1
H4	C4	C5	N5	306.8	306.2
H4	C4	C5	H5	192.1	186.0
H4	C4	O4	HO4	57.4	300.3
C2	O6	C6	C5	307.2	292.6
C6	C5	C4	O4	188.2	186.4
C6	C5	C4	H4	67.7	66.1
C4	C5	C6	N5	230.5	240.1
C4	C5	C6	H5	114.7	119.9
N5	C5	C6	H5	244.2	239.8
C6	C5	N5	C10	142.5	150.2
C6	C5	N5	HN5	322.5	330.2
C7	C6	C5	O6	120.0	120.1
C7	C6	C5	H6	238.9	240.3
C5	C6	C7	C8	166.2	179.6
C5	C6	C7	O7	288.4	299.6
C5	C6	C7	H7	46.2	59.6
O6	C6	C5	H6	118.9	120.2
N5	C5	C4	O4	67.3	66.5
N5	C5	C4	H4	306.8	306.2
C4	C5	N5	C6	121.8	119.6
C4	C5	N5	H5	246.3	239.8
C6	C5	N5	H5	124.5	120.2
N5	C5	C6	C7	300.5	301.2
N5	C5	C6	O6	180.4	181.1
N5	C5	C6	H6	61.6	60.9
C11	C10	N5	C5	120.3	180.0
C5	N5	C10	O10	308.5	360.0
C10	N5	C5	HN5	180.0	180.0
H5	C5	C4	O4	312.6	306.3
H5	C5	C4	H4	192.1	186.0
C4	C5	H5	C6	242.5	240.4
C4	C5	H5	N5	125.8	120.2
C6	C5	H5	N5	243.3	239.8
H5	C5	C6	C7	56.3	61.4
H5	C5	C6	O6	296.2	301.3
H5	C5	C6	H6	177.4	181.1
H5	C5	N5	C10	18.0	30.0
H5	C5	N5	HN5	198.0	210.0
C2	O6	C6	C7	185.3	172.4
C7	C6	C5	N5	300.5	301.2
C7	C6	C5	H5	56.3	61.4
C5	C6	C7	O6	236.2	239.6
C5	C6	C7	H6	117.1	119.7
O6	C6	C7	H6	240.9	240.1
C8	C7	C6	O7	237.8	240.0
C8	C7	C6	H7	120.0	120.0
C6	C7	C8	C9	92.5	180.0
C6	C7	C8	O8	210.5	300.0
C6	C7	C8	H8	332.1	60.0
O7	C7	C6	H7	242.3	240.0
C6	C7	O7	HO7	180.0	300.1
O6	C6	C5	N5	180.4	181.1
O6	C6	C5	H5	296.2	301.3
C5	C6	O6	C7	121.9	120.1
C5	C6	O6	H6	243.0	240.0
C7	C6	O6	H6	121.2	119.8
O6	C6	C7	C8	290.0	300.0
O6	C6	C7	O7	52.3	60.0
O6	C6	C7	H7	170.0	180.0
H6	C6	C5	N5	61.6	60.9
H6	C6	C5	H5	177.4	181.1
C5	C6	H6	C7	240.0	240.2
C5	C6	H6	O6	121.9	120.4
C7	C6	H6	O6	241.9	240.1
H6	C6	C7	C8	49.1	59.9
H6	C6	C7	O7	171.3	179.9
H6	C6	C7	H7	289.1	299.9
C8	C7	C6	O6	290.0	300.0
C8	C7	C6	H6	49.1	59.9
C6	C7	C8	O7	121.2	120.0
C6	C7	C8	H7	238.9	240.0
O7	C7	C8	H7	117.7	120.0
C8	C7	O7	HO7	299.0	60.1
C9	C8	C7	O8	242.0	240.0
C9	C8	C7	H8	120.4	120.1
C7	C8	C9	O9	279.3	180.0
C7	C8	C9	H92	44.6	299.9
C7	C8	C9	H91	154.1	60.0
O8	C8	C7	H8	238.4	240.0
C7	C8	O8	HO8	180.0	300.0
O7	C7	C6	O6	52.3	60.0
O7	C7	C6	H6	171.3	179.9
C6	C7	O7	C8	241.0	240.0
C6	C7	O7	H7	121.0	120.1
C8	C7	O7	H7	240.1	240.0
O7	C7	C8	C9	331.3	60.0
O7	C7	C8	O8	89.4	180.0
O7	C7	C8	H8	210.9	300.0
H7	C7	C6	O6	170.0	180.0
H7	C7	C6	H6	289.1	299.9
C6	C7	H7	C8	118.2	120.0
C6	C7	H7	O7	239.7	240.0
C8	C7	H7	O7	121.5	119.9
H7	C7	C8	C9	213.6	300.1
H7	C7	C8	O8	331.6	60.0
H7	C7	C8	H8	93.2	180.0
H7	C7	O7	HO7	59.0	180.0
C9	C8	C7	O7	331.3	60.0
C9	C8	C7	H7	213.6	300.1
C7	C8	C9	O8	124.2	119.9
C7	C8	C9	H8	246.3	240.0
O8	C8	C9	H8	122.0	120.0
C9	C8	O8	HO8	305.1	59.9
O9	C9	C8	H92	234.8	240.1
O9	C9	C8	H91	125.2	120.0
C8	C9	O9	HO9	180.0	179.9
H92	C9	C8	H91	250.4	240.0
O8	C8	C7	O7	89.4	180.0
O8	C8	C7	H7	331.6	60.0
C7	C8	O8	C9	234.8	240.0
C7	C8	O8	H8	113.8	120.0
C9	C8	O8	H8	239.0	239.9
O8	C8	C9	O9	155.1	60.0
O8	C8	C9	H92	280.3	180.0
O8	C8	C9	H91	29.9	300.0
H8	C8	C7	O7	210.9	300.0
H8	C8	C7	H7	93.2	180.0
C7	C8	H8	C9	122.7	120.0
C7	C8	H8	O8	238.2	240.1
C9	C8	H8	O8	115.5	120.0
H8	C8	C9	O9	33.1	300.0
H8	C8	C9	H92	158.3	60.0
H8	C8	C9	H91	267.8	180.0
H8	C8	O8	HO8	66.1	180.0
O9	C9	C8	O8	155.1	60.0
O9	C9	C8	H8	33.1	300.0
C8	C9	O9	H92	125.2	119.9
C8	C9	O9	H91	234.8	239.9
H92	C9	O9	H91	109.6	120.0
H92	C9	C8	O8	280.3	180.0
H92	C9	C8	H8	158.3	60.0
C8	C9	H92	O9	235.5	240.1
C8	C9	H92	H91	117.8	120.0
O9	C9	H92	H91	242.2	240.0
H92	C9	O9	HO9	54.8	60.0
H91	C9	C8	O8	29.9	300.0
H91	C9	C8	H8	267.8	180.0
C8	C9	H91	O9	124.5	120.0
C8	C9	H91	H92	242.2	240.0
O9	C9	H91	H92	117.8	120.0
H91	C9	O9	HO9	305.2	300.0
C5	N5	C10	C11	120.3	180.0
N5	C10	C11	O10	188.2	180.0
C11	C10	N5	HN5	300.3	0.0
H111	C11	C10	H113	234.7	240.1
H111	C11	C10	H112	125.3	120.0
H113	C11	C10	H112	250.6	239.9
C10	N5	C5	H5	18.0	30.0
C5	N5	C10	HN5	180.0	180.0
C11	C10	N5	O10	171.9	180.0
N5	C10	C11	H111	180.0	180.0
N5	C10	C11	H113	305.3	299.9
N5	C10	C11	H112	54.7	60.0
C11	C10	O10	N5	188.1	180.0
O10	C10	C11	H111	351.7	0.0
O10	C10	C11	H113	117.1	120.0
O10	C10	C11	H112	226.5	240.1
O10	C10	N5	HN5	128.4	180.0
H111	C11	C10	N5	180.0	180.0
H111	C11	C10	O10	351.7	0.0
C10	C11	H111	H113	125.3	119.9
C10	C11	H111	H112	234.7	240.0
H113	C11	H111	H112	109.5	120.1
H113	C11	C10	N5	305.3	299.9
H113	C11	C10	O10	117.1	120.0
C10	C11	H113	H111	227.6	240.1
C10	C11	H113	H112	113.8	120.1
H111	C11	H113	H112	246.2	240.0
H112	C11	C10	N5	54.7	60.0
H112	C11	C10	O10	226.5	240.1
C10	C11	H112	H111	132.4	120.0
C10	C11	H112	H113	246.3	240.0
H111	C11	H112	H113	113.8	120.0
HN5	N5	C5	H5	198.0	210.0
C5	N5	HN5	C10	180.0	180.0
HN5	N5	C10	O10	128.4	180.0
HO2	O2	C2	O6	69.5	300.4
HO4	O4	C4	H4	57.4	300.3
HO7	O7	C7	H7	59.0	180.0
HO8	O8	C8	H8	66.1	180.0
HO9	O9	C9	H92	54.8	60.0
HO9	O9	C9	H91	305.2	300.0