PDB Chemical Component SKM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SKM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O12 |
C8 |
1.429 |
1.428 |
O12 |
H12 |
0.950 |
0.968 |
C8 |
C6 |
1.542 |
1.533 |
C8 |
C9 |
1.540 |
1.530 |
C8 |
H8 |
1.115 |
1.090 |
C6 |
O7 |
1.430 |
1.429 |
C6 |
C5 |
1.541 |
1.530 |
C6 |
H6 |
1.115 |
1.091 |
O7 |
HO7 |
0.950 |
0.967 |
C5 |
C4 |
1.541 |
1.501 |
C5 |
H51 |
1.116 |
1.090 |
C5 |
H52 |
1.115 |
1.089 |
C4 |
C1 |
1.539 |
1.469 |
C4 |
C10 |
1.345 |
1.316 |
C1 |
O2 |
1.293 |
1.348 |
C1 |
O3 |
1.290 |
1.216 |
O2 |
HO2 |
0.950 |
0.968 |
C10 |
C9 |
1.541 |
1.501 |
C10 |
H10 |
1.103 |
1.080 |
C9 |
O11 |
1.431 |
1.430 |
C9 |
H9 |
1.115 |
1.091 |
O11 |
H11 |
0.950 |
0.967 |
Bond Angles for SKM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
O12 |
H12 |
108.9 |
106.8 |
O12 |
C8 |
C6 |
108.9 |
110.0 |
O12 |
C8 |
C9 |
109.9 |
109.6 |
O12 |
C8 |
H8 |
109.7 |
109.7 |
C6 |
C8 |
C9 |
109.9 |
108.5 |
C6 |
C8 |
H8 |
109.7 |
109.3 |
C8 |
C6 |
O7 |
110.0 |
109.6 |
C8 |
C6 |
C5 |
109.3 |
108.7 |
C8 |
C6 |
H6 |
109.5 |
109.7 |
C9 |
C8 |
H8 |
108.7 |
109.6 |
C8 |
C9 |
C10 |
111.3 |
110.3 |
C8 |
C9 |
O11 |
109.9 |
109.1 |
C8 |
C9 |
H9 |
108.0 |
109.4 |
O7 |
C6 |
C5 |
110.4 |
109.6 |
O7 |
C6 |
H6 |
108.4 |
109.6 |
C6 |
O7 |
HO7 |
110.0 |
106.8 |
C5 |
C6 |
H6 |
109.1 |
109.6 |
C6 |
C5 |
C4 |
112.7 |
110.1 |
C6 |
C5 |
H51 |
111.0 |
109.4 |
C6 |
C5 |
H52 |
111.0 |
109.4 |
C4 |
C5 |
H51 |
111.0 |
109.4 |
C4 |
C5 |
H52 |
111.1 |
109.4 |
C5 |
C4 |
C1 |
119.1 |
118.1 |
C5 |
C4 |
C10 |
122.2 |
123.8 |
H51 |
C5 |
H52 |
99.3 |
109.3 |
C1 |
C4 |
C10 |
118.6 |
118.1 |
C4 |
C1 |
O2 |
120.0 |
120.0 |
C4 |
C1 |
O3 |
120.5 |
120.0 |
C4 |
C10 |
C9 |
123.1 |
123.8 |
C4 |
C10 |
H10 |
111.3 |
118.1 |
O2 |
C1 |
O3 |
119.5 |
120.0 |
C1 |
O2 |
HO2 |
120.0 |
120.0 |
C9 |
C10 |
H10 |
125.6 |
118.1 |
C10 |
C9 |
O11 |
109.7 |
109.4 |
C10 |
C9 |
H9 |
108.2 |
109.4 |
O11 |
C9 |
H9 |
109.6 |
109.3 |
C9 |
O11 |
H11 |
109.9 |
106.8 |
Torsion Angles for SKM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C8 |
O12 |
C9 |
239.6 |
240.7 |
C6 |
C8 |
O12 |
H8 |
120.1 |
120.3 |
O12 |
C8 |
C6 |
O7 |
177.2 |
307.5 |
O12 |
C8 |
C6 |
C5 |
55.7 |
187.7 |
O12 |
C8 |
C6 |
H6 |
296.2 |
67.9 |
C9 |
C8 |
O12 |
H8 |
240.5 |
239.6 |
O12 |
C8 |
C9 |
C10 |
289.2 |
190.3 |
O12 |
C8 |
C9 |
O11 |
51.0 |
310.5 |
O12 |
C8 |
C9 |
H9 |
170.6 |
70.0 |
H12 |
O12 |
C8 |
C6 |
180.0 |
180.7 |
H12 |
O12 |
C8 |
C9 |
300.4 |
299.9 |
H12 |
O12 |
C8 |
H8 |
59.9 |
60.4 |
C6 |
C8 |
O12 |
H12 |
180.0 |
180.7 |
O12 |
C8 |
C6 |
C9 |
120.4 |
119.9 |
O12 |
C8 |
C6 |
H8 |
239.9 |
239.5 |
C9 |
C8 |
C6 |
H8 |
119.5 |
119.5 |
C6 |
C8 |
C9 |
C10 |
49.0 |
310.5 |
C6 |
C8 |
C9 |
O11 |
170.8 |
70.7 |
C6 |
C8 |
C9 |
H9 |
290.4 |
190.2 |
O7 |
C6 |
C8 |
C5 |
121.4 |
119.8 |
O7 |
C6 |
C8 |
H6 |
240.9 |
239.6 |
C8 |
C6 |
O7 |
HO7 |
180.0 |
180.4 |
C5 |
C6 |
C8 |
H6 |
119.5 |
119.8 |
C8 |
C6 |
C5 |
C4 |
46.3 |
310.3 |
C8 |
C6 |
C5 |
H51 |
281.0 |
70.5 |
C8 |
C6 |
C5 |
H52 |
171.6 |
190.1 |
C9 |
C8 |
O12 |
H12 |
300.4 |
299.9 |
O12 |
C8 |
C9 |
C6 |
240.2 |
239.8 |
O12 |
C8 |
C9 |
H8 |
120.1 |
120.5 |
C6 |
C8 |
C9 |
H8 |
239.9 |
240.6 |
C9 |
C8 |
C6 |
O7 |
56.7 |
187.6 |
C9 |
C8 |
C6 |
C5 |
295.3 |
67.8 |
C9 |
C8 |
C6 |
H6 |
175.8 |
308.0 |
C4 |
C10 |
C9 |
C8 |
342.7 |
17.1 |
C8 |
C9 |
C10 |
H10 |
162.7 |
197.1 |
C10 |
C9 |
C8 |
O11 |
238.2 |
239.8 |
C10 |
C9 |
C8 |
H9 |
118.7 |
120.3 |
O11 |
C9 |
C8 |
H9 |
240.4 |
240.5 |
C8 |
C9 |
O11 |
H11 |
180.0 |
179.3 |
H8 |
C8 |
O12 |
H12 |
59.9 |
60.4 |
O12 |
C8 |
H8 |
C6 |
119.6 |
120.7 |
O12 |
C8 |
H8 |
C9 |
239.8 |
239.6 |
C6 |
C8 |
H8 |
C9 |
120.2 |
118.9 |
H8 |
C8 |
C6 |
O7 |
297.2 |
68.0 |
H8 |
C8 |
C6 |
C5 |
175.8 |
308.2 |
H8 |
C8 |
C6 |
H6 |
56.3 |
188.4 |
H8 |
C8 |
C9 |
C10 |
169.1 |
69.9 |
H8 |
C8 |
C9 |
O11 |
290.9 |
190.0 |
H8 |
C8 |
C9 |
H9 |
50.4 |
309.6 |
O7 |
C6 |
C8 |
C9 |
56.7 |
187.6 |
O7 |
C6 |
C8 |
H8 |
297.2 |
68.0 |
C8 |
C6 |
O7 |
C5 |
239.3 |
240.8 |
C8 |
C6 |
O7 |
H6 |
119.8 |
120.4 |
C5 |
C6 |
O7 |
H6 |
240.5 |
239.7 |
O7 |
C6 |
C5 |
C4 |
285.2 |
190.5 |
O7 |
C6 |
C5 |
H51 |
159.9 |
310.7 |
O7 |
C6 |
C5 |
H52 |
50.5 |
70.3 |
C5 |
C6 |
C8 |
C9 |
295.3 |
67.8 |
C5 |
C6 |
C8 |
H8 |
175.8 |
308.2 |
C8 |
C6 |
C5 |
O7 |
121.1 |
119.8 |
C8 |
C6 |
C5 |
H6 |
240.2 |
240.2 |
O7 |
C6 |
C5 |
H6 |
119.1 |
120.4 |
C5 |
C6 |
O7 |
HO7 |
300.7 |
299.6 |
C4 |
C5 |
C6 |
H51 |
125.3 |
239.8 |
C4 |
C5 |
C6 |
H52 |
234.7 |
120.2 |
C6 |
C5 |
C4 |
C1 |
168.7 |
197.2 |
C6 |
C5 |
C4 |
C10 |
345.2 |
17.2 |
H51 |
C5 |
C6 |
H52 |
109.4 |
240.4 |
H6 |
C6 |
C8 |
C9 |
175.8 |
308.0 |
H6 |
C6 |
C8 |
H8 |
56.3 |
188.4 |
C8 |
C6 |
H6 |
O7 |
240.0 |
239.6 |
C8 |
C6 |
H6 |
C5 |
119.6 |
119.2 |
O7 |
C6 |
H6 |
C5 |
239.7 |
239.6 |
H6 |
C6 |
O7 |
HO7 |
60.2 |
59.9 |
H6 |
C6 |
C5 |
C4 |
166.1 |
70.2 |
H6 |
C6 |
C5 |
H51 |
40.8 |
190.4 |
H6 |
C6 |
C5 |
H52 |
291.4 |
310.0 |
HO7 |
O7 |
C6 |
C5 |
300.7 |
299.6 |
HO7 |
O7 |
C6 |
H6 |
60.2 |
59.9 |
C4 |
C5 |
C6 |
H6 |
166.1 |
70.2 |
C6 |
C5 |
C4 |
H51 |
234.7 |
120.2 |
C6 |
C5 |
C4 |
H52 |
125.3 |
239.8 |
H51 |
C5 |
C4 |
H52 |
250.5 |
119.6 |
C1 |
C4 |
C5 |
C10 |
183.5 |
180.0 |
C5 |
C4 |
C1 |
O2 |
13.1 |
360.0 |
C5 |
C4 |
C1 |
O3 |
191.3 |
180.0 |
C5 |
C4 |
C10 |
C9 |
359.8 |
359.5 |
C5 |
C4 |
C10 |
H10 |
179.8 |
179.6 |
H51 |
C5 |
C6 |
H6 |
40.8 |
190.4 |
C6 |
C5 |
H51 |
C4 |
126.2 |
239.4 |
C6 |
C5 |
H51 |
H52 |
243.1 |
119.7 |
C4 |
C5 |
H51 |
H52 |
116.9 |
240.3 |
H51 |
C5 |
C4 |
C1 |
293.9 |
77.0 |
H51 |
C5 |
C4 |
C10 |
110.4 |
257.0 |
H52 |
C5 |
C6 |
H6 |
291.4 |
310.0 |
C6 |
C5 |
H52 |
C4 |
233.8 |
120.6 |
C6 |
C5 |
H52 |
H51 |
116.9 |
240.3 |
C4 |
C5 |
H52 |
H51 |
243.1 |
119.7 |
H52 |
C5 |
C4 |
C1 |
43.4 |
317.4 |
H52 |
C5 |
C4 |
C10 |
219.9 |
137.4 |
C1 |
C4 |
C5 |
H51 |
293.9 |
77.0 |
C1 |
C4 |
C5 |
H52 |
43.4 |
317.4 |
C5 |
C4 |
C1 |
C10 |
176.6 |
180.0 |
C1 |
C4 |
C10 |
C9 |
176.4 |
179.5 |
C1 |
C4 |
C10 |
H10 |
356.3 |
359.6 |
O2 |
C1 |
C4 |
O3 |
181.8 |
179.9 |
C4 |
C1 |
O2 |
HO2 |
180.0 |
180.1 |
C8 |
C9 |
C10 |
C4 |
342.7 |
17.1 |
C10 |
C4 |
C5 |
H51 |
110.4 |
257.0 |
C10 |
C4 |
C5 |
H52 |
219.9 |
137.4 |
C5 |
C4 |
C10 |
C1 |
183.5 |
180.0 |
C10 |
C4 |
C1 |
O2 |
196.4 |
180.0 |
C10 |
C4 |
C1 |
O3 |
14.7 |
0.0 |
C9 |
C10 |
C4 |
H10 |
180.0 |
180.0 |
C4 |
C10 |
C9 |
O11 |
220.8 |
257.1 |
C4 |
C10 |
C9 |
H9 |
101.2 |
137.4 |
O2 |
C1 |
C4 |
C10 |
196.4 |
180.0 |
C4 |
C1 |
O2 |
O3 |
178.3 |
180.1 |
O3 |
C1 |
C4 |
C10 |
14.7 |
0.0 |
C4 |
C1 |
O3 |
O2 |
181.8 |
179.9 |
O3 |
C1 |
O2 |
HO2 |
1.7 |
360.0 |
HO2 |
O2 |
C1 |
O3 |
1.7 |
360.0 |
C10 |
C9 |
C8 |
H8 |
169.1 |
69.9 |
C8 |
C9 |
C10 |
O11 |
121.9 |
120.0 |
C8 |
C9 |
C10 |
H9 |
241.5 |
239.7 |
C4 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
O11 |
C9 |
C10 |
H9 |
119.6 |
119.7 |
C10 |
C9 |
O11 |
H11 |
302.8 |
300.0 |
C4 |
C10 |
H10 |
C9 |
180.0 |
180.0 |
H10 |
C10 |
C9 |
O11 |
40.8 |
77.1 |
H10 |
C10 |
C9 |
H9 |
281.2 |
317.4 |
O11 |
C9 |
C8 |
H8 |
290.9 |
190.0 |
C8 |
C9 |
O11 |
C10 |
237.3 |
239.3 |
C8 |
C9 |
O11 |
H9 |
118.5 |
119.5 |
O11 |
C9 |
C10 |
H10 |
40.8 |
77.1 |
C10 |
C9 |
O11 |
H9 |
241.3 |
240.3 |
H9 |
C9 |
C8 |
H8 |
50.4 |
309.6 |
C8 |
C9 |
H9 |
C10 |
120.6 |
120.9 |
C8 |
C9 |
H9 |
O11 |
240.2 |
240.6 |
H9 |
C9 |
C10 |
H10 |
281.2 |
317.4 |
C10 |
C9 |
H9 |
O11 |
119.6 |
119.7 |
H9 |
C9 |
O11 |
H11 |
61.5 |
59.7 |
H11 |
O11 |
C9 |
H9 |
61.5 |
59.7 |