PDB Chemical Component SCI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SCI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.469 |
| N |
HN1 |
1.021 |
1.008 |
| N |
HN2 |
1.021 |
1.009 |
| CA |
CB |
1.531 |
1.530 |
| CA |
C |
1.525 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.518 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.114 |
1.090 |
| CG |
CD |
1.528 |
1.529 |
| CG |
HG1 |
1.114 |
1.090 |
| CG |
HG2 |
1.115 |
1.090 |
| CD |
NE |
1.455 |
1.465 |
| CD |
HD1 |
1.114 |
1.089 |
| CD |
HD2 |
1.115 |
1.090 |
| NE |
CZ |
1.336 |
1.305 |
| CZ |
NH1 |
1.331 |
1.376 |
| CZ |
S |
1.685 |
1.760 |
| NH1 |
HN11 |
1.020 |
0.970 |
| NH1 |
HN12 |
1.020 |
0.970 |
| S |
HS |
0.949 |
1.410 |
| C |
OT1 |
1.248 |
1.208 |
| C |
OT2 |
1.253 |
1.342 |
| OT2 |
HO2 |
0.949 |
0.967 |
Bond Angles for SCI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
110.2 |
106.7 |
| CA |
N |
HN2 |
111.9 |
106.6 |
| N |
CA |
CB |
110.2 |
109.4 |
| N |
CA |
C |
112.8 |
109.5 |
| N |
CA |
HA |
106.9 |
109.5 |
| HN1 |
N |
HN2 |
111.9 |
106.7 |
| CB |
CA |
C |
110.4 |
109.5 |
| CB |
CA |
HA |
109.5 |
109.5 |
| CA |
CB |
CG |
111.9 |
109.5 |
| CA |
CB |
HB1 |
111.3 |
109.5 |
| CA |
CB |
HB2 |
111.3 |
109.5 |
| C |
CA |
HA |
106.8 |
109.5 |
| CA |
C |
OT1 |
118.1 |
120.0 |
| CA |
C |
OT2 |
118.1 |
120.0 |
| CG |
CB |
HB1 |
111.3 |
109.5 |
| CG |
CB |
HB2 |
111.3 |
109.4 |
| CB |
CG |
CD |
113.8 |
109.5 |
| CB |
CG |
HG1 |
110.7 |
109.5 |
| CB |
CG |
HG2 |
110.6 |
109.4 |
| HB1 |
CB |
HB2 |
99.1 |
109.5 |
| CD |
CG |
HG1 |
110.6 |
109.5 |
| CD |
CG |
HG2 |
110.6 |
109.5 |
| CG |
CD |
NE |
113.5 |
109.4 |
| CG |
CD |
HD1 |
110.8 |
109.5 |
| CG |
CD |
HD2 |
110.7 |
109.5 |
| HG1 |
CG |
HG2 |
99.7 |
109.5 |
| NE |
CD |
HD1 |
110.7 |
109.5 |
| NE |
CD |
HD2 |
110.7 |
109.5 |
| CD |
NE |
CZ |
123.4 |
120.0 |
| HD1 |
CD |
HD2 |
99.5 |
109.5 |
| NE |
CZ |
NH1 |
120.2 |
120.0 |
| NE |
CZ |
S |
120.4 |
120.0 |
| NH1 |
CZ |
S |
119.4 |
120.0 |
| CZ |
NH1 |
HN11 |
120.2 |
120.0 |
| CZ |
NH1 |
HN12 |
108.4 |
120.0 |
| CZ |
S |
HS |
120.4 |
100.0 |
| HN11 |
NH1 |
HN12 |
108.4 |
120.0 |
| OT1 |
C |
OT2 |
123.8 |
120.0 |
| C |
OT2 |
HO2 |
118.1 |
120.0 |
Torsion Angles for SCI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
236.1 |
240.0 |
| CB |
CA |
N |
HA |
119.0 |
120.0 |
| N |
CA |
CB |
CG |
284.8 |
300.0 |
| N |
CA |
CB |
HB1 |
50.0 |
60.0 |
| N |
CA |
CB |
HB2 |
159.5 |
180.0 |
| C |
CA |
N |
HA |
242.9 |
240.0 |
| N |
CA |
C |
OT1 |
348.7 |
329.9 |
| N |
CA |
C |
OT2 |
168.3 |
150.1 |
| CA |
N |
HN1 |
HN2 |
234.7 |
246.3 |
| HN1 |
N |
CA |
CB |
180.0 |
53.8 |
| HN1 |
N |
CA |
C |
303.9 |
173.8 |
| HN1 |
N |
CA |
HA |
61.0 |
293.8 |
| CA |
N |
HN2 |
HN1 |
124.4 |
113.8 |
| HN2 |
N |
CA |
CB |
54.7 |
300.0 |
| HN2 |
N |
CA |
C |
178.6 |
60.0 |
| HN2 |
N |
CA |
HA |
295.7 |
180.0 |
| CB |
CA |
N |
HN1 |
180.0 |
53.8 |
| CB |
CA |
N |
HN2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
125.2 |
120.0 |
| N |
CA |
CB |
HA |
242.6 |
240.0 |
| C |
CA |
CB |
HA |
117.4 |
120.0 |
| CB |
CA |
C |
OT1 |
112.5 |
89.9 |
| CB |
CA |
C |
OT2 |
292.0 |
270.0 |
| CG |
CB |
CA |
HB1 |
234.8 |
240.0 |
| CG |
CB |
CA |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD |
145.1 |
180.0 |
| CA |
CB |
CG |
HG1 |
270.4 |
300.0 |
| CA |
CB |
CG |
HG2 |
19.9 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
240.0 |
| C |
CA |
N |
HN1 |
303.9 |
173.8 |
| C |
CA |
N |
HN2 |
178.6 |
60.0 |
| N |
CA |
C |
CB |
236.2 |
240.0 |
| N |
CA |
C |
HA |
117.2 |
120.0 |
| CB |
CA |
C |
HA |
241.0 |
240.0 |
| C |
CA |
CB |
CG |
159.5 |
180.0 |
| C |
CA |
CB |
HB1 |
284.7 |
300.0 |
| C |
CA |
CB |
HB2 |
34.3 |
60.0 |
| OT1 |
C |
CA |
OT2 |
180.5 |
179.8 |
| CA |
C |
OT2 |
HO2 |
180.0 |
180.0 |
| HA |
CA |
N |
HN1 |
61.0 |
293.8 |
| HA |
CA |
N |
HN2 |
295.7 |
180.0 |
| N |
CA |
HA |
CB |
119.4 |
119.9 |
| N |
CA |
HA |
C |
239.0 |
240.0 |
| CB |
CA |
HA |
C |
119.6 |
120.1 |
| HA |
CA |
CB |
CG |
42.2 |
60.0 |
| HA |
CA |
CB |
HB1 |
167.4 |
180.0 |
| HA |
CA |
CB |
HB2 |
276.9 |
300.0 |
| HA |
CA |
C |
OT1 |
231.5 |
209.9 |
| HA |
CA |
C |
OT2 |
51.1 |
30.1 |
| CG |
CB |
CA |
C |
159.5 |
180.0 |
| CG |
CB |
CA |
HA |
42.2 |
60.0 |
| CA |
CB |
CG |
HB1 |
125.2 |
120.0 |
| CA |
CB |
CG |
HB2 |
234.7 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
109.5 |
120.0 |
| CD |
CG |
CB |
HG1 |
234.7 |
240.0 |
| CD |
CG |
CB |
HG2 |
125.2 |
120.0 |
| CB |
CG |
CD |
NE |
339.5 |
180.0 |
| CB |
CG |
CD |
HD1 |
104.8 |
300.0 |
| CB |
CG |
CD |
HD2 |
214.2 |
60.0 |
| HG1 |
CG |
CB |
HG2 |
250.5 |
240.1 |
| HB1 |
CB |
CA |
C |
284.7 |
300.0 |
| HB1 |
CB |
CA |
HA |
167.4 |
180.0 |
| CA |
CB |
HB1 |
CG |
234.5 |
239.9 |
| CA |
CB |
HB1 |
HB2 |
117.3 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
242.8 |
240.0 |
| HB1 |
CB |
CG |
CD |
19.9 |
60.0 |
| HB1 |
CB |
CG |
HG1 |
145.2 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
254.7 |
299.9 |
| HB2 |
CB |
CA |
C |
34.3 |
60.0 |
| HB2 |
CB |
CA |
HA |
276.9 |
300.0 |
| CA |
CB |
HB2 |
CG |
125.6 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
242.8 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
117.2 |
120.0 |
| HB2 |
CB |
CG |
CD |
270.4 |
300.0 |
| HB2 |
CB |
CG |
HG1 |
35.7 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
145.2 |
180.0 |
| CD |
CG |
CB |
HB1 |
19.9 |
60.0 |
| CD |
CG |
CB |
HB2 |
270.4 |
300.0 |
| CB |
CG |
CD |
HG1 |
125.3 |
120.0 |
| CB |
CG |
CD |
HG2 |
234.8 |
240.0 |
| HG1 |
CG |
CD |
HG2 |
109.5 |
120.0 |
| NE |
CD |
CG |
HD1 |
234.7 |
240.0 |
| NE |
CD |
CG |
HD2 |
125.3 |
120.0 |
| CG |
CD |
NE |
CZ |
156.5 |
120.0 |
| HD1 |
CD |
CG |
HD2 |
250.6 |
240.0 |
| HG1 |
CG |
CB |
HB1 |
145.2 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
35.7 |
60.0 |
| CB |
CG |
HG1 |
CD |
232.9 |
240.0 |
| CB |
CG |
HG1 |
HG2 |
116.5 |
119.9 |
| CD |
CG |
HG1 |
HG2 |
243.6 |
240.0 |
| HG1 |
CG |
CD |
NE |
214.2 |
60.0 |
| HG1 |
CG |
CD |
HD1 |
339.5 |
180.0 |
| HG1 |
CG |
CD |
HD2 |
88.9 |
300.0 |
| HG2 |
CG |
CB |
HB1 |
254.7 |
299.9 |
| HG2 |
CG |
CB |
HB2 |
145.2 |
180.0 |
| CB |
CG |
HG2 |
CD |
127.0 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
243.5 |
240.0 |
| CD |
CG |
HG2 |
HG1 |
116.4 |
120.0 |
| HG2 |
CG |
CD |
NE |
104.8 |
300.0 |
| HG2 |
CG |
CD |
HD1 |
230.1 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
339.5 |
180.0 |
| NE |
CD |
CG |
HG1 |
214.2 |
60.0 |
| NE |
CD |
CG |
HG2 |
104.8 |
300.0 |
| CG |
CD |
NE |
HD1 |
125.3 |
120.0 |
| CG |
CD |
NE |
HD2 |
234.7 |
240.0 |
| HD1 |
CD |
NE |
HD2 |
109.4 |
120.0 |
| CD |
NE |
CZ |
NH1 |
180.7 |
180.0 |
| CD |
NE |
CZ |
S |
0.4 |
360.0 |
| HD1 |
CD |
CG |
HG1 |
339.5 |
180.0 |
| HD1 |
CD |
CG |
HG2 |
230.1 |
60.0 |
| CG |
CD |
HD1 |
NE |
233.2 |
240.0 |
| CG |
CD |
HD1 |
HD2 |
116.6 |
120.0 |
| NE |
CD |
HD1 |
HD2 |
243.4 |
240.0 |
| HD1 |
CD |
NE |
CZ |
31.2 |
0.0 |
| HD2 |
CD |
CG |
HG1 |
88.9 |
300.0 |
| HD2 |
CD |
CG |
HG2 |
339.5 |
180.0 |
| CG |
CD |
HD2 |
NE |
126.8 |
120.0 |
| CG |
CD |
HD2 |
HD1 |
243.4 |
239.9 |
| NE |
CD |
HD2 |
HD1 |
116.6 |
120.0 |
| HD2 |
CD |
NE |
CZ |
281.8 |
240.0 |
| CZ |
NE |
CD |
HD1 |
31.2 |
0.0 |
| CZ |
NE |
CD |
HD2 |
281.8 |
240.0 |
| NH1 |
CZ |
NE |
S |
180.3 |
180.0 |
| NE |
CZ |
NH1 |
HN11 |
180.0 |
179.9 |
| NE |
CZ |
NH1 |
HN12 |
54.7 |
360.0 |
| NE |
CZ |
S |
HS |
179.9 |
180.0 |
| NE |
CZ |
NH1 |
S |
179.7 |
180.0 |
| NH1 |
CZ |
S |
HS |
359.6 |
360.0 |
| HN11 |
NH1 |
CZ |
HN12 |
125.3 |
179.9 |
| NE |
CZ |
S |
NH1 |
180.3 |
180.0 |
| S |
CZ |
NH1 |
HN11 |
0.4 |
359.9 |
| S |
CZ |
NH1 |
HN12 |
235.0 |
180.0 |
| HN11 |
NH1 |
CZ |
S |
0.4 |
359.9 |
| CZ |
NH1 |
HN11 |
HN12 |
234.7 |
180.1 |
| HN12 |
NH1 |
CZ |
S |
235.0 |
180.0 |
| CZ |
NH1 |
HN12 |
HN11 |
132.0 |
179.9 |
| OT1 |
C |
CA |
HA |
231.5 |
209.9 |
| CA |
C |
OT1 |
OT2 |
179.5 |
180.2 |
| OT1 |
C |
OT2 |
HO2 |
359.5 |
0.1 |
| OT2 |
C |
CA |
HA |
51.1 |
30.1 |
| CA |
C |
OT2 |
OT1 |
180.5 |
179.8 |