PDB Chemical Component RP5

Ideal Model

Chemical Description

Name 5-O-phosphono-beta-D-ribofuranose
Synonyms [(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE; 5-O-phosphono-beta-D-ribose; 5-O-phosphono-D-ribose; 5-O-phosphono-ribose
Formula C5 H11 O8 P
Formal charge 0
Molecular weight 230.110 g/mol
Component type D-saccharide, beta linking
Nonstandard Parent Id BDR

Chemical features

Atom count 25
Chiral atom count 4
Chiral atoms C1 C2 C3 C4
Observed leaving atoms O1 HO2 HO3 HO1
Bond count 25
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-O-phosphono-beta-D-ribofuranose
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]1O
SMILES (CACTVS) O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O)OP(=O)(O)O
InChI descriptor InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1
InChIKey descriptor KTVPXOYAKDPRHY-TXICZTDVSA-N

Status Information

Last modified 2020-07-17
Created 2003-04-30
Release status REL
Model PDB code 1OGE
Processing site EBI