PDB Chemical Component RP5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RP5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O4	1.409	1.444
C1	C2	1.528	1.544
C1	O1	1.405	1.429
C1	H1	1.100	1.090
O4	C4	1.418	1.444
C2	O2	1.419	1.429
C2	C3	1.525	1.545
C2	H2	1.100	1.090
O2	HO2	0.950	0.968
C3	O3	1.422	1.429
C3	C4	1.536	1.545
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
C4	C5	1.543	1.530
C4	H4	1.100	1.089
C5	O5	1.446	1.429
C5	H51	1.100	1.090
C5	H52	1.100	1.090
O5	P'	1.582	1.610
P'	O1X	1.478	1.480
P'	O2X	1.537	1.610
P'	O3X	1.531	1.610
O2X	HO'	0.950	0.967
O3X	HOA	0.950	0.967
O1	HO1	0.950	0.967

Bond Angles for RP5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O4	C1	C2	105.9	104.8
O4	C1	O1	104.9	110.4
O4	C1	H1	115.9	110.4
C1	O4	C4	111.3	105.3
C2	C1	O1	113.1	110.4
C2	C1	H1	108.2	110.4
C1	C2	O2	109.7	110.6
C1	C2	C3	101.7	104.0
C1	C2	H2	114.1	110.5
O1	C1	H1	109.0	110.4
C1	O1	HO1	109.5	114.0
O4	C4	C3	106.4	104.8
O4	C4	C5	110.7	110.4
O4	C4	H4	111.6	110.4
O2	C2	C3	109.1	110.5
O2	C2	H2	107.4	110.4
C2	O2	HO2	109.5	114.0
C3	C2	H2	114.7	110.6
C2	C3	O3	107.6	110.5
C2	C3	C4	103.1	104.1
C2	C3	H3	116.7	110.5
O3	C3	C4	114.8	110.5
O3	C3	H3	105.3	110.4
C3	O3	HO3	109.5	114.0
C4	C3	H3	109.7	110.6
C3	C4	C5	112.1	110.4
C3	C4	H4	110.3	110.4
C5	C4	H4	105.9	110.5
C4	C5	O5	111.2	109.5
C4	C5	H51	108.9	109.5
C4	C5	H52	108.9	109.5
O5	C5	H51	108.9	109.5
O5	C5	H52	108.9	109.5
C5	O5	P'	115.8	123.0
H51	C5	H52	110.0	109.4
O5	P'	O1X	109.5	109.5
O5	P'	O2X	109.3	109.5
O5	P'	O3X	110.3	109.5
O1X	P'	O2X	109.1	109.4
O1X	P'	O3X	109.4	109.5
O2X	P'	O3X	109.2	109.5
P'	O2X	HO'	109.5	114.0
P'	O3X	HOA	109.5	114.0

Torsion Angles for RP5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O4	O1	119.8	118.8
C2	C1	O4	H1	240.1	241.1
O4	C1	C2	O2	82.8	142.6
O4	C1	C2	C3	327.4	24.0
O4	C1	C2	H2	203.3	265.2
O1	C1	O4	H1	120.3	122.3
O4	C1	O1	HO1	180.0	298.6
C1	O4	C4	C3	0.9	40.5
C1	O4	C4	C5	122.9	159.3
C1	O4	C4	H4	240.6	281.7
O4	C1	C2	O1	245.6	241.2
O4	C1	C2	H1	124.8	118.8
C2	C1	O4	C4	20.2	319.5
O1	C1	C2	H1	239.2	237.7
C2	C1	O1	HO1	65.1	183.2
O2	C2	C1	C3	115.4	118.6
O2	C2	C1	H2	239.5	237.4
C1	C2	O2	HO2	180.0	61.4
C3	C2	C1	H2	124.1	118.8
C1	C2	C3	O3	153.7	118.6
C1	C2	C3	C4	32.0	0.0
C1	C2	C3	H3	271.7	241.2
O4	C1	O1	C2	114.9	115.4
O4	C1	O1	H1	235.3	237.7
O1	C1	O4	C4	260.4	200.6
C2	C1	O1	H1	120.4	122.3
O1	C1	C2	O2	197.2	261.4
O1	C1	C2	C3	81.8	142.8
O1	C1	C2	H2	317.7	24.0
O4	C1	H1	C2	241.4	244.6
O4	C1	H1	O1	118.1	122.3
H1	C1	O4	C4	140.1	78.3
C2	C1	H1	O1	236.7	237.7
H1	C1	C2	O2	318.0	23.8
H1	C1	C2	C3	202.6	265.1
H1	C1	C2	H2	78.5	146.4
H1	C1	O1	HO1	304.7	60.8
C4	O4	C1	C2	20.2	319.5
C4	O4	C1	O1	260.4	200.6
C4	O4	C1	H1	140.1	78.3
C2	C3	C4	O4	338.6	336.0
O3	C3	C4	O4	221.8	217.4
O4	C4	C3	H3	103.5	94.8
C3	C4	O4	C5	238.0	241.2
C3	C4	O4	H4	120.3	118.8
C5	C4	O4	H4	242.3	237.6
O4	C4	C5	O5	60.6	66.5
O4	C4	C5	H51	180.7	186.5
O4	C4	C5	H52	300.6	306.4
O2	C2	C1	O1	197.2	261.4
O2	C2	C1	H1	318.0	23.8
C1	C2	O2	C3	249.4	245.4
C1	C2	O2	H2	124.5	122.6
C3	C2	O2	H2	235.1	237.3
O2	C2	C3	O3	37.9	360.0
O2	C2	C3	C4	276.2	241.3
O2	C2	C3	H3	155.9	122.5
C3	C2	C1	O1	81.8	142.8
C3	C2	C1	H1	202.6	265.1
C1	C2	C3	O2	115.8	118.7
C1	C2	C3	H2	236.3	241.3
O4	C4	C3	C2	338.6	336.0
O2	C2	C3	H2	120.5	122.6
C3	C2	O2	HO2	290.6	176.1
O3	C3	C2	C4	121.8	118.6
O3	C3	C2	H3	242.0	237.4
C2	C3	O3	HO3	180.0	61.5
C4	C3	C2	H3	120.2	118.8
C2	C3	C4	C5	217.5	217.2
C2	C3	C4	H4	99.8	94.8
H2	C2	C1	O1	317.7	24.0
H2	C2	C1	H1	78.5	146.4
C1	C2	H2	O2	238.2	237.3
C1	C2	H2	C3	116.8	114.7
O2	C2	H2	C3	238.6	237.4
H2	C2	O2	HO2	55.4	298.8
H2	C2	C3	O3	277.5	237.4
H2	C2	C3	C4	155.7	118.7
H2	C2	C3	H3	35.5	359.9
HO2	O2	C2	C3	290.6	176.1
HO2	O2	C2	H2	55.4	298.8
O4	C4	C3	O3	221.8	217.4
O3	C3	C2	H2	277.5	237.4
C2	C3	O3	C4	245.9	245.4
C2	C3	O3	H3	125.1	122.6
C4	C3	O3	H3	239.2	237.2
O3	C3	C4	C5	100.7	98.6
O3	C3	C4	H4	343.1	336.2
O4	C4	C3	C5	121.1	118.8
O4	C4	C3	H4	238.8	241.2
C4	C3	C2	H2	155.7	118.7
C2	C3	C4	O3	116.7	118.6
C2	C3	C4	H3	235.1	241.3
O3	C3	C4	H3	118.3	122.6
C4	C3	O3	HO3	294.1	176.1
C5	C4	C3	H4	117.7	122.4
C3	C4	C5	O5	179.2	181.8
C3	C4	C5	H51	299.3	301.8
C3	C4	C5	H52	59.2	61.8
H3	C3	C2	H2	35.5	359.9
C2	C3	H3	O3	240.7	237.4
C2	C3	H3	C4	116.6	114.7
O3	C3	H3	C4	235.9	237.3
H3	C3	O3	HO3	54.9	298.9
H3	C3	C4	C5	342.4	335.9
H3	C3	C4	H4	224.7	213.6
HO3	O3	C3	C4	294.1	176.1
HO3	O3	C3	H3	54.9	298.9
O4	C4	C5	C3	241.4	244.6
O4	C4	C5	H4	121.2	122.3
C5	C4	C3	H3	342.4	335.9
C3	C4	C5	H4	239.8	237.7
O5	C5	C4	H51	240.0	240.0
O5	C5	C4	H52	120.0	120.0
C4	C5	O5	P'	86.7	180.0
H51	C5	C4	H52	240.0	240.0
O4	C4	H4	C3	118.0	115.3
O4	C4	H4	C5	239.5	237.7
H4	C4	C3	H3	224.7	213.6
C3	C4	H4	C5	121.4	122.3
H4	C4	C5	O5	299.5	304.1
H4	C4	C5	H51	59.5	64.1
H4	C4	C5	H52	179.5	184.1
O5	C5	C4	H4	299.5	304.1
C4	C5	O5	H51	120.0	120.0
C4	C5	O5	H52	240.0	240.0
H51	C5	O5	H52	120.0	119.9
C5	O5	P'	O1X	179.2	305.0
C5	O5	P'	O2X	298.7	65.0
C5	O5	P'	O3X	58.8	185.0
H51	C5	C4	H4	59.5	64.1
C4	C5	H51	O5	238.5	240.0
C4	C5	H51	H52	119.3	120.0
O5	C5	H51	H52	240.7	240.0
H51	C5	O5	P'	326.7	60.0
H52	C5	C4	H4	179.5	184.1
C4	C5	H52	O5	121.5	120.0
C4	C5	H52	H51	240.7	240.0
O5	C5	H52	H51	119.3	120.0
H52	C5	O5	P'	206.7	300.0
P'	O5	C5	H51	326.7	60.0
P'	O5	C5	H52	206.7	300.0
O1X	P'	O5	O2X	240.5	240.0
O1X	P'	O5	O3X	120.5	120.0
O2X	P'	O5	O3X	239.9	240.0
O5	P'	O2X	HO'	240.3	60.0
O5	P'	O3X	HOA	120.4	180.0
O5	P'	O1X	O2X	119.6	120.0
O5	P'	O1X	O3X	239.0	240.0
O2X	P'	O1X	O3X	119.5	120.0
O1X	P'	O2X	HO'	0.0	180.0
O1X	P'	O3X	HOA	360.0	60.0
O5	P'	O2X	O1X	240.3	240.0
O5	P'	O2X	O3X	120.7	120.0
O1X	P'	O2X	O3X	240.4	240.0
O2X	P'	O3X	HOA	240.6	300.0
O5	P'	O3X	O1X	120.5	120.0
O5	P'	O3X	O2X	239.9	240.0
O1X	P'	O3X	O2X	119.4	120.0
O3X	P'	O2X	HO'	119.6	300.0
HO'	O2X	P'	O3X	119.6	300.0
HO1	O1	C1	H1	304.7	60.8