PDB Chemical Component QND
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for QND
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.354 |
1.318 |
| N1 |
C10 |
1.338 |
1.331 |
| C2 |
C3 |
1.388 |
1.403 |
| C2 |
C |
1.439 |
1.481 |
| C3 |
C4 |
1.396 |
1.363 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C9 |
1.394 |
1.408 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.379 |
1.362 |
| C5 |
C9 |
1.409 |
1.404 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
C7 |
1.370 |
1.393 |
| C6 |
H6 |
1.103 |
1.080 |
| C7 |
C8 |
1.402 |
1.360 |
| C7 |
H7 |
1.104 |
1.080 |
| C8 |
C10 |
1.383 |
1.408 |
| C8 |
H8 |
1.103 |
1.080 |
| C9 |
C10 |
1.356 |
1.419 |
| C |
O1 |
1.259 |
1.214 |
| C |
O2 |
1.355 |
1.347 |
| O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for QND
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C10 |
126.6 |
121.4 |
| N1 |
C2 |
C3 |
115.2 |
121.4 |
| N1 |
C2 |
C |
122.2 |
119.4 |
| N1 |
C10 |
C8 |
121.3 |
121.0 |
| N1 |
C10 |
C9 |
118.8 |
120.0 |
| C3 |
C2 |
C |
122.4 |
119.2 |
| C2 |
C3 |
C4 |
120.4 |
119.9 |
| C2 |
C3 |
H3 |
119.5 |
120.1 |
| C2 |
C |
O1 |
124.7 |
120.1 |
| C2 |
C |
O2 |
114.1 |
120.0 |
| C4 |
C3 |
H3 |
120.1 |
120.1 |
| C3 |
C4 |
C9 |
120.2 |
118.2 |
| C3 |
C4 |
H4 |
120.0 |
120.9 |
| C9 |
C4 |
H4 |
119.8 |
120.8 |
| C4 |
C9 |
C5 |
121.5 |
121.3 |
| C4 |
C9 |
C10 |
118.7 |
119.1 |
| C6 |
C5 |
C9 |
121.1 |
119.7 |
| C6 |
C5 |
H5 |
118.3 |
120.2 |
| C5 |
C6 |
C7 |
118.5 |
120.9 |
| C5 |
C6 |
H6 |
121.1 |
119.6 |
| C9 |
C5 |
H5 |
120.6 |
120.2 |
| C5 |
C9 |
C10 |
119.8 |
119.6 |
| C7 |
C6 |
H6 |
120.4 |
119.6 |
| C6 |
C7 |
C8 |
120.9 |
121.1 |
| C6 |
C7 |
H7 |
118.4 |
119.5 |
| C8 |
C7 |
H7 |
120.7 |
119.4 |
| C7 |
C8 |
C10 |
119.8 |
119.7 |
| C7 |
C8 |
H8 |
120.7 |
120.1 |
| C10 |
C8 |
H8 |
119.5 |
120.2 |
| C8 |
C10 |
C9 |
119.9 |
119.0 |
| O1 |
C |
O2 |
121.2 |
119.9 |
| C |
O2 |
HO2 |
114.2 |
120.0 |
Torsion Angles for QND
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C10 |
C8 |
180.1 |
180.2 |
| C2 |
N1 |
C10 |
C9 |
0.3 |
0.5 |
| C3 |
C2 |
N1 |
C |
174.4 |
179.8 |
| N1 |
C2 |
C3 |
C4 |
2.5 |
0.2 |
| N1 |
C2 |
C3 |
H3 |
182.5 |
180.2 |
| N1 |
C2 |
C |
O1 |
185.7 |
179.8 |
| N1 |
C2 |
C |
O2 |
7.7 |
359.8 |
| C10 |
N1 |
C2 |
C3 |
358.7 |
359.5 |
| C10 |
N1 |
C2 |
C |
184.2 |
179.7 |
| C4 |
C9 |
C10 |
N1 |
359.7 |
359.7 |
| C5 |
C9 |
C10 |
N1 |
181.0 |
179.8 |
| C7 |
C8 |
C10 |
N1 |
177.0 |
180.3 |
| N1 |
C10 |
C8 |
H8 |
357.0 |
0.4 |
| C8 |
C10 |
N1 |
C9 |
179.8 |
179.7 |
| C3 |
C2 |
N1 |
C10 |
358.7 |
359.5 |
| N1 |
C2 |
C3 |
C |
185.6 |
180.2 |
| C3 |
C2 |
C |
O1 |
11.7 |
-0.0 |
| C3 |
C2 |
C |
O2 |
193.7 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C9 |
357.3 |
-0.0 |
| C2 |
C3 |
C4 |
H4 |
177.3 |
180.0 |
| C |
C2 |
N1 |
C10 |
184.2 |
179.7 |
| N1 |
C2 |
C |
C3 |
174.0 |
179.8 |
| C |
C2 |
C3 |
C4 |
176.9 |
180.0 |
| C |
C2 |
C3 |
H3 |
356.9 |
360.0 |
| O1 |
C |
C2 |
O2 |
178.0 |
180.0 |
| C2 |
C |
O2 |
HO2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C |
176.9 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C9 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C9 |
C5 |
180.2 |
180.0 |
| C3 |
C4 |
C9 |
C10 |
1.6 |
0.0 |
| H3 |
C3 |
C2 |
C |
356.9 |
-0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C9 |
177.3 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
357.3 |
-0.0 |
| N1 |
C10 |
C9 |
C4 |
359.7 |
359.7 |
| C9 |
C4 |
C3 |
H3 |
177.3 |
180.0 |
| C3 |
C4 |
C9 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C9 |
C4 |
181.7 |
180.0 |
| C4 |
C9 |
C5 |
H5 |
1.7 |
360.0 |
| C5 |
C9 |
C4 |
C10 |
178.6 |
180.0 |
| C8 |
C10 |
C9 |
C4 |
179.9 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
357.3 |
-0.0 |
| C3 |
C4 |
H4 |
C9 |
180.0 |
180.0 |
| H4 |
C4 |
C9 |
C5 |
0.2 |
-0.0 |
| H4 |
C4 |
C9 |
C10 |
181.5 |
180.0 |
| C4 |
C9 |
C5 |
C6 |
181.7 |
180.0 |
| C9 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C6 |
C5 |
C9 |
C10 |
0.3 |
360.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
C8 |
357.8 |
-0.0 |
| C5 |
C6 |
C7 |
H7 |
177.8 |
180.0 |
| N1 |
C10 |
C9 |
C5 |
181.0 |
179.8 |
| C5 |
C9 |
C4 |
H4 |
0.2 |
-0.0 |
| C4 |
C9 |
C5 |
C10 |
181.4 |
180.0 |
| C6 |
C5 |
C9 |
H5 |
180.0 |
180.0 |
| C9 |
C5 |
C6 |
C7 |
0.2 |
-0.0 |
| C9 |
C5 |
C6 |
H6 |
180.2 |
180.0 |
| C8 |
C10 |
C9 |
C5 |
1.2 |
0.1 |
| C6 |
C5 |
H5 |
C9 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
180.2 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.2 |
-0.0 |
| H5 |
C5 |
C9 |
C10 |
180.3 |
180.0 |
| C7 |
C6 |
C5 |
C9 |
0.2 |
-0.0 |
| C7 |
C6 |
C5 |
H5 |
180.2 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C10 |
3.7 |
0.0 |
| C6 |
C7 |
C8 |
H8 |
183.7 |
179.9 |
| H6 |
C6 |
C5 |
C9 |
180.2 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.2 |
-0.0 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
C8 |
177.8 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
357.8 |
-0.0 |
| N1 |
C10 |
C8 |
C7 |
177.0 |
180.3 |
| C8 |
C7 |
C6 |
H6 |
177.8 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C10 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
| C7 |
C8 |
C10 |
C9 |
356.8 |
359.9 |
| H7 |
C7 |
C6 |
H6 |
357.8 |
-0.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C10 |
183.7 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
3.7 |
359.9 |
| N1 |
C10 |
C8 |
C9 |
180.2 |
180.3 |
| C4 |
C9 |
C10 |
C8 |
179.9 |
180.0 |
| C5 |
C9 |
C10 |
C8 |
1.2 |
0.1 |
| C10 |
C8 |
C7 |
H7 |
183.7 |
180.0 |
| C7 |
C8 |
C10 |
H8 |
180.0 |
179.9 |
| H8 |
C8 |
C7 |
H7 |
3.7 |
359.9 |
| C7 |
C8 |
H8 |
C10 |
180.0 |
180.1 |
| H8 |
C8 |
C10 |
C9 |
176.8 |
180.0 |
| N1 |
C10 |
C9 |
C8 |
179.8 |
179.7 |
| C10 |
C9 |
C4 |
H4 |
181.5 |
180.0 |
| C4 |
C9 |
C10 |
C5 |
178.7 |
180.0 |
| C10 |
C9 |
C5 |
H5 |
180.3 |
180.0 |
| C9 |
C10 |
C8 |
H8 |
176.8 |
180.0 |
| C2 |
C |
O1 |
O2 |
182.1 |
180.0 |
| O1 |
C |
O2 |
HO2 |
1.9 |
-0.0 |
| C2 |
C |
O2 |
O1 |
178.1 |
180.0 |