PDB Chemical Component PXM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.381	1.318
N1	C6	1.399	1.318
C2	C2A	1.518	1.507
C2	C3	1.428	1.385
C2A	H2A1	1.115	1.090
C2A	H2A2	1.115	1.090
C2A	H2A3	1.115	1.090
C3	O3	1.350	1.359
C3	C4	1.435	1.390
O3	HO3	0.950	0.966
C4	C5	1.476	1.385
C4	C4A	1.438	1.507
C5	C5A	1.551	1.507
C5	C6	1.407	1.382
C5A	O5	1.396	1.429
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.089
O5	HO5	0.950	0.966
C6	H6	1.103	1.080
C4A	N4	1.474	1.468
C4A	H4A1	1.115	1.091
C4A	H4A2	1.115	1.089
N4	HN41	1.020	1.009
N4	HN42	1.020	1.010

Bond Angles for PXM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	126.2	121.8
N1	C2	C2A	119.4	119.6
N1	C2	C3	117.2	120.7
N1	C6	C5	117.5	120.9
N1	C6	H6	120.9	119.5
C2A	C2	C3	123.3	119.7
C2	C2A	H2A1	108.6	109.5
C2	C2A	H2A2	119.4	109.5
C2	C2A	H2A3	108.6	109.4
C2	C3	O3	116.5	120.5
C2	C3	C4	120.5	119.1
H2A1	C2A	H2A2	108.7	109.5
H2A1	C2A	H2A3	101.4	109.5
H2A2	C2A	H2A3	108.6	109.5
O3	C3	C4	123.0	120.4
C3	O3	HO3	116.5	106.8
C3	C4	C5	118.5	118.4
C3	C4	C4A	119.2	120.8
C5	C4	C4A	122.2	120.8
C4	C5	C5A	118.2	120.4
C4	C5	C6	119.8	119.2
C4	C4A	N4	103.5	109.5
C4	C4A	H4A1	114.5	109.5
C4	C4A	H4A2	114.5	109.5
C5A	C5	C6	121.9	120.4
C5	C5A	O5	111.4	109.5
C5	C5A	H5A1	111.5	109.5
C5	C5A	H5A2	111.5	109.5
C5	C6	H6	121.5	119.6
O5	C5A	H5A1	111.5	109.4
O5	C5A	H5A2	111.5	109.4
C5A	O5	HO5	111.4	106.9
H5A1	C5A	H5A2	98.9	109.5
N4	C4A	H4A1	114.5	109.4
N4	C4A	H4A2	114.5	109.5
C4A	N4	HN41	114.5	106.7
C4A	N4	HN42	103.5	106.7
H4A1	C4A	H4A2	96.0	109.4
HN41	N4	HN42	114.5	106.7

Torsion Angles for PXM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	359.6	0.0
C2	N1	C6	H6	179.6	180.0
C2A	C2	N1	C3	182.4	179.7
N1	C2	C2A	H2A1	54.7	89.9
N1	C2	C2A	H2A2	180.0	210.0
N1	C2	C2A	H2A3	305.3	330.0
N1	C2	C3	O3	181.1	180.0
N1	C2	C3	C4	360.0	359.4
C6	N1	C2	C2A	184.3	180.0
C6	N1	C2	C3	1.9	0.3
C4	C5	C6	N1	357.3	0.0
C5A	C5	C6	N1	176.9	180.0
C5	C6	N1	H6	180.0	180.0
C2A	C2	N1	C6	184.3	180.0
N1	C2	C2A	C3	177.5	180.3
C2A	C2	C3	O3	358.6	0.3
C2A	C2	C3	C4	177.5	179.7
H2A1	C2A	C2	H2A2	234.7	239.9
H2A1	C2A	C2	H2A3	109.5	120.0
H2A2	C2A	C2	H2A3	234.7	240.0
C3	C2	N1	C6	1.9	0.3
N1	C2	C3	C2A	182.5	179.7
C3	C2	C2A	H2A1	237.2	269.7
C3	C2	C2A	H2A2	2.5	29.7
C3	C2	C2A	H2A3	127.8	149.7
O3	C3	C2	C4	181.1	180.6
C2	C3	O3	HO3	180.0	269.4
C2	C3	C4	C5	357.0	0.6
C2	C3	C4	C4A	179.6	180.3
H2A1	C2A	C2	C3	237.2	269.7
C2	C2A	H2A1	H2A2	131.4	120.0
C2	C2A	H2A1	H2A3	245.7	240.0
H2A2	C2A	H2A1	H2A3	114.3	120.0
H2A2	C2A	C2	C3	2.5	29.7
C2	C2A	H2A2	H2A1	234.7	240.0
C2	C2A	H2A2	H2A3	125.3	120.0
H2A1	C2A	H2A2	H2A3	250.5	240.0
H2A3	C2A	C2	C3	127.8	149.7
C2	C2A	H2A3	H2A1	114.3	120.0
C2	C2A	H2A3	H2A2	228.6	240.0
H2A1	C2A	H2A3	H2A2	114.3	120.0
C2	C3	O3	C4	178.8	179.4
O3	C3	C4	C5	175.8	180.0
O3	C3	C4	C4A	358.4	359.7
C2	C3	C4	O3	181.2	180.6
C4	C3	O3	HO3	1.2	90.0
C5	C4	C3	C4A	177.4	180.3
C3	C4	C5	C5A	184.7	179.7
C3	C4	C5	C6	4.4	359.7
C3	C4	C4A	N4	85.7	270.3
C3	C4	C4A	H4A1	320.4	150.3
C3	C4	C4A	H4A2	211.0	30.4
HO3	O3	C3	C4	1.2	90.0
N1	C6	C5	C4	357.3	0.0
C3	C4	C5	C4A	182.7	179.7
C5	C4	C4A	N4	268.4	90.0
C5	C4	C4A	H4A1	143.1	330.0
C5	C4	C4A	H4A2	33.7	210.0
C5A	C5	C4	C6	180.3	180.0
C4	C5	C5A	O5	179.7	180.0
C4	C5	C5A	H5A1	54.4	60.1
C4	C5	C5A	H5A2	304.9	300.0
C4	C5	C6	H6	177.3	180.0
C3	C4	C4A	C5	177.3	180.3
C4A	C4	C5	C5A	2.0	0.0
C4A	C4	C5	C6	181.7	180.0
N4	C4A	C4	H4A1	125.2	120.0
N4	C4A	C4	H4A2	234.7	239.9
C4	C4A	N4	HN41	54.8	180.0
C4	C4A	N4	HN42	180.0	293.8
H4A1	C4A	C4	H4A2	109.5	119.9
N1	C6	C5	C5A	176.9	180.0
C5A	C5	C4	C4A	2.0	0.0
C4	C5	C5A	C6	179.7	180.0
C5A	C5	C6	H6	356.9	360.0
O5	C5A	C5	H5A1	125.3	119.9
O5	C5A	C5	H5A2	234.8	240.0
C5	C5A	O5	HO5	180.0	180.0
H5A1	C5A	C5	H5A2	109.5	120.1
N1	C6	C5	H6	180.0	180.0
C6	C5	C4	C4A	181.7	180.0
C4	C5	C6	C5A	180.3	180.0
C6	C5	C5A	O5	0.0	0.0
C6	C5	C5A	H5A1	234.8	240.1
C6	C5	C5A	H5A2	125.3	120.0
O5	C5A	C5	C6	0.0	0.0
C5	C5A	O5	H5A1	234.7	240.0
C5	C5A	O5	H5A2	125.3	120.0
H5A1	C5A	O5	H5A2	250.5	240.0
H5A1	C5A	C5	C6	234.8	240.1
C5	C5A	H5A1	O5	125.2	120.0
C5	C5A	H5A1	H5A2	242.6	240.0
O5	C5A	H5A1	H5A2	117.4	119.9
H5A1	C5A	O5	HO5	305.3	300.0
H5A2	C5A	C5	C6	125.3	120.0
C5	C5A	H5A2	O5	234.8	240.0
C5	C5A	H5A2	H5A1	117.4	120.0
O5	C5A	H5A2	H5A1	242.6	240.1
H5A2	C5A	O5	HO5	54.8	59.9
HO5	O5	C5A	H5A1	305.3	300.0
HO5	O5	C5A	H5A2	54.8	59.9
N1	C6	H6	C5	180.0	180.0
C4	C4A	N4	H4A1	234.7	240.0
C4	C4A	N4	H4A2	125.3	120.1
H4A1	C4A	N4	H4A2	250.5	240.1
HN41	N4	C4A	HN42	234.7	246.3
C4	C4A	H4A1	N4	119.3	120.1
C4	C4A	H4A1	H4A2	239.6	240.0
N4	C4A	H4A1	H4A2	120.4	119.9
H4A1	C4A	N4	HN41	180.0	300.1
H4A1	C4A	N4	HN42	305.3	53.8
C4	C4A	H4A2	N4	240.7	239.9
C4	C4A	H4A2	H4A1	120.4	120.0
N4	C4A	H4A2	H4A1	239.6	240.1
H4A2	C4A	N4	HN41	289.5	60.0
H4A2	C4A	N4	HN42	54.7	173.7
HN41	N4	C4A	H4A1	180.0	300.1
HN41	N4	C4A	H4A2	289.5	60.0
C4A	N4	HN41	HN42	119.3	113.8
HN42	N4	C4A	H4A1	305.3	53.8
HN42	N4	C4A	H4A2	54.7	173.7
C4A	N4	HN42	HN41	234.7	246.2