PDB Chemical Component PXL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
OP4	C5A	1.421	1.428
OP4	HP4	0.950	0.966
C5A	C5	1.541	1.507
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.089
C5	C6	1.440	1.380
C5	C4	1.458	1.402
C6	N1	1.437	1.318
C6	H6	1.103	1.080
N1	C2	1.431	1.316
C2	C3	1.445	1.388
C2	C2A	1.525	1.507
C3	C4	1.459	1.405
C3	O3	1.402	1.356
C4	C4A	1.534	1.472
C4A	O4A	1.243	1.212
C4A	H4A	1.103	1.080
O3	HO3	0.950	0.967
C2A	H2A1	1.115	1.090
C2A	H2A2	1.114	1.090
C2A	H2A3	1.115	1.090

Bond Angles for PXL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5A	OP4	HP4	112.1	106.8
OP4	C5A	C5	112.1	109.6
OP4	C5A	H5A1	111.2	109.4
OP4	C5A	H5A2	111.3	109.5
C5	C5A	H5A1	111.2	109.4
C5	C5A	H5A2	111.2	109.5
C5A	C5	C6	120.8	120.5
C5A	C5	C4	119.5	120.6
H5A1	C5A	H5A2	99.1	109.4
C6	C5	C4	119.7	119.0
C5	C6	N1	119.6	121.1
C5	C6	H6	120.3	119.4
C5	C4	C3	120.1	118.1
C5	C4	C4A	118.6	120.9
N1	C6	H6	120.1	119.5
C6	N1	C2	121.4	122.2
N1	C2	C3	120.1	120.8
N1	C2	C2A	119.6	119.6
C3	C2	C2A	120.3	119.6
C2	C3	C4	119.1	118.8
C2	C3	O3	119.7	120.6
C2	C2A	H2A1	108.6	109.4
C2	C2A	H2A2	119.6	109.5
C2	C2A	H2A3	108.6	109.5
C4	C3	O3	121.2	120.6
C3	C4	C4A	121.3	121.0
C3	O3	HO3	119.8	106.8
C4	C4A	O4A	117.5	120.0
C4	C4A	H4A	131.0	120.0
O4A	C4A	H4A	111.4	120.0
H2A1	C2A	H2A2	108.6	109.5
H2A1	C2A	H2A3	101.4	109.4
H2A2	C2A	H2A3	108.6	109.5

Torsion Angles for PXL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C5A	OP4	H5A1	125.3	120.0
C5	C5A	OP4	H5A2	234.7	239.9
OP4	C5A	C5	C6	355.6	0.1
OP4	C5A	C5	C4	176.0	180.0
H5A1	C5A	OP4	H5A2	109.5	119.9
HP4	OP4	C5A	C5	180.0	180.0
HP4	OP4	C5A	H5A1	54.8	60.0
HP4	OP4	C5A	H5A2	305.3	300.0
C5	C5A	OP4	HP4	180.0	180.0
OP4	C5A	C5	H5A1	234.8	240.0
OP4	C5A	C5	H5A2	125.3	120.1
H5A1	C5A	C5	H5A2	250.5	240.1
C6	C5	C5A	C4	179.6	180.0
C5A	C5	C6	N1	180.2	180.0
C5A	C5	C6	H6	0.2	0.0
C5A	C5	C4	C3	180.2	179.7
C5A	C5	C4	C4A	359.6	0.0
H5A1	C5A	OP4	HP4	54.8	60.0
OP4	C5A	H5A1	C5	125.8	120.1
OP4	C5A	H5A1	H5A2	242.9	240.0
C5	C5A	H5A1	H5A2	117.1	119.9
H5A1	C5A	C5	C6	120.8	120.0
H5A1	C5A	C5	C4	301.2	300.0
H5A2	C5A	OP4	HP4	305.3	300.0
OP4	C5A	H5A2	C5	234.2	239.9
OP4	C5A	H5A2	H5A1	117.1	120.0
C5	C5A	H5A2	H5A1	242.9	240.1
H5A2	C5A	C5	C6	230.3	239.9
H5A2	C5A	C5	C4	50.7	59.9
C6	C5	C5A	H5A1	120.8	120.0
C6	C5	C5A	H5A2	230.3	239.9
C5A	C5	C6	C4	180.4	180.0
C6	C5	C4	C3	0.6	359.7
C6	C5	C4	C4A	180.0	180.0
N1	C6	C5	H6	180.0	180.0
C5	C6	N1	C2	0.1	360.0
C4	C5	C5A	H5A1	301.2	300.0
C4	C5	C5A	H5A2	50.7	59.9
C5A	C5	C4	C6	179.6	180.0
C4	C5	C6	N1	359.8	360.0
C4	C5	C6	H6	179.8	180.0
C2	C3	C4	C5	359.1	0.6
C5	C4	C3	O3	179.7	180.0
C3	C4	C5	C4A	180.6	179.7
C5	C4	C4A	O4A	180.3	180.1
C5	C4	C4A	H4A	0.3	360.0
N1	C6	C5	C4	359.8	360.0
C5	C6	N1	H6	180.0	180.0
C6	N1	C2	C3	359.6	0.3
C6	N1	C2	C2A	179.8	180.0
H6	C6	C5	C4	179.8	180.0
C5	C6	H6	N1	180.0	180.0
H6	C6	N1	C2	180.1	180.0
C2	N1	C6	H6	180.1	180.0
C3	C2	N1	C2A	179.7	180.3
N1	C2	C3	C4	0.9	359.4
N1	C2	C3	O3	180.3	180.0
N1	C2	C2A	H2A1	54.8	90.0
N1	C2	C2A	H2A2	180.0	210.0
N1	C2	C2A	H2A3	305.3	330.1
C5	C4	C3	C2	359.1	0.6
N1	C2	C3	C2A	180.3	179.7
C3	C2	C2A	H2A1	235.0	269.7
C3	C2	C2A	H2A2	0.3	29.7
C3	C2	C2A	H2A3	125.5	149.8
C4	C3	C2	O3	180.6	179.4
C2	C3	C4	C4A	179.7	180.3
C2	C3	O3	HO3	180.0	269.4
N1	C2	C2A	C3	179.7	180.3
C2A	C2	C3	C4	180.6	179.7
C2A	C2	C3	O3	0.0	0.3
H2A1	C2A	C2	H2A2	234.7	240.0
H2A1	C2A	C2	H2A3	109.5	119.9
H2A2	C2A	C2	H2A3	234.8	239.9
C5	C4	C3	C4A	179.4	180.3
C4	C3	C2	C2A	180.6	179.7
C2	C3	C4	O3	179.4	180.6
C4	C3	O3	HO3	359.4	90.0
C3	C4	C4A	O4A	359.7	0.3
C3	C4	C4A	H4A	179.7	180.3
O3	C3	C2	C2A	0.0	0.3
C2	C3	O3	C4	180.6	179.4
O3	C3	C4	C4A	0.3	359.7
C5	C4	C4A	C3	180.6	179.7
C4A	C4	C3	O3	0.3	359.7
O4A	C4A	C4	H4A	180.0	180.1
C4	C4A	O4A	H4A	180.0	179.9
C4	C4A	H4A	O4A	180.0	180.1
C2	C2A	H2A1	H2A2	131.5	120.0
C2	C2A	H2A1	H2A3	245.7	240.0
H2A2	C2A	H2A1	H2A3	114.3	120.0
C2	C2A	H2A2	H2A1	234.7	240.0
C2	C2A	H2A2	H2A3	125.2	120.1
H2A1	C2A	H2A2	H2A3	250.5	240.1
C2	C2A	H2A3	H2A1	114.3	119.9
C2	C2A	H2A3	H2A2	228.5	239.9
H2A1	C2A	H2A3	H2A2	114.3	120.0