PDB Chemical Component PRE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PRE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.510	1.499
C1	C6	1.520	1.498
C1	C7	1.550	1.507
C1	C8	1.535	1.529
C2	C3	1.353	1.298
C2	H2	1.103	1.079
C3	C4	1.498	1.498
C3	H3	1.103	1.080
C4	O4	1.395	1.429
C4	C5	1.516	1.499
C4	H4	1.869	1.090
O4	HO4	0.950	0.966
C5	C6	1.359	1.298
C5	H5	1.103	1.080
C6	H6	1.103	1.080
C7	O71	1.231	1.208
C7	O72	1.244	1.342
O72	HO72	0.950	0.967
C8	C1'	1.524	1.506
C8	H81	1.115	1.090
C8	H82	1.115	1.089
C1'	O1'	1.202	1.207
C1'	C2'	1.523	1.491
C2'	O'L	1.225	1.213
C2'	O'M	1.234	1.345
O'M	HO2'	0.949	0.967

Bond Angles for PRE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	107.1	111.2
C2	C1	C7	110.7	109.1
C2	C1	C8	113.0	109.1
C1	C2	C3	123.3	122.8
C1	C2	H2	124.1	118.6
C6	C1	C7	114.0	109.1
C6	C1	C8	113.7	109.2
C1	C6	C5	122.3	122.8
C1	C6	H6	124.7	118.6
C7	C1	C8	98.2	109.1
C1	C7	O71	118.6	120.0
C1	C7	O72	120.7	120.0
C1	C8	C1'	117.3	109.5
C1	C8	H81	109.3	109.5
C1	C8	H82	109.4	109.5
C3	C2	H2	112.5	118.6
C2	C3	C4	121.5	122.9
C2	C3	H3	114.1	118.6
C4	C3	H3	124.4	118.6
C3	C4	O4	106.8	109.2
C3	C4	C5	110.7	111.2
C3	C4	H4	135.1	109.1
O4	C4	C5	110.1	109.1
O4	C4	H4	29.9	109.1
C4	O4	HO4	106.8	106.9
C5	C4	H4	100.4	109.1
C4	C5	C6	121.8	122.8
C4	C5	H5	124.7	118.6
C6	C5	H5	113.5	118.6
C5	C6	H6	113.0	118.6
O71	C7	O72	120.7	120.0
C7	O72	HO72	120.7	120.0
C1'	C8	H81	109.4	109.4
C1'	C8	H82	109.4	109.5
C8	C1'	O1'	119.9	120.0
C8	C1'	C2'	117.3	120.1
H81	C8	H82	100.8	109.4
O1'	C1'	C2'	122.4	119.9
C1'	C2'	O'L	118.6	119.9
C1'	C2'	O'M	119.8	120.1
O'L	C2'	O'M	121.6	120.0
C2'	O'M	HO2'	119.8	120.1

Torsion Angles for PRE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	124.8	239.6
C6	C1	C2	C8	233.9	120.4
C2	C1	C6	C5	31.8	340.5
C2	C1	C6	H6	211.8	160.5
C7	C1	C2	C8	109.1	240.9
C2	C1	C7	O71	137.1	120.0
C2	C1	C7	O72	317.1	300.0
C2	C1	C8	C1'	298.1	180.1
C2	C1	C8	H81	63.4	300.0
C2	C1	C8	H82	172.9	60.0
C3	C2	C1	H2	180.0	179.9
C1	C2	C3	C4	7.5	0.1
C1	C2	C3	H3	187.5	180.0
C2	C1	C6	C7	237.2	120.4
C2	C1	C6	C8	125.6	239.6
C6	C1	C2	C3	326.4	19.5
C6	C1	C2	H2	146.4	199.5
C7	C1	C6	C8	248.5	119.2
C6	C1	C7	O71	16.2	241.6
C6	C1	C7	O72	196.3	61.7
C6	C1	C8	C1'	60.5	58.4
C6	C1	C8	H81	185.8	178.3
C6	C1	C8	H82	295.3	298.3
C4	C5	C6	C1	355.3	360.0
C1	C6	C5	H5	175.4	180.0
C5	C6	C1	H6	180.0	180.0
C2	C1	C7	C6	120.8	238.3
C2	C1	C7	C8	241.5	119.1
C7	C1	C2	C3	201.6	139.9
C7	C1	C2	H2	21.6	320.0
C6	C1	C7	C8	120.6	240.8
C7	C1	C6	C5	154.6	220.1
C7	C1	C6	H6	334.7	40.1
C7	C1	C8	C1'	181.4	299.2
C7	C1	C8	H81	306.6	59.2
C7	C1	C8	H82	56.1	179.2
O71	C7	C1	O72	180.0	180.0
C1	C7	O72	HO72	179.9	180.0
C2	C1	C8	C6	237.6	121.7
C2	C1	C8	C7	116.8	240.9
C8	C1	C2	C3	92.5	259.0
C8	C1	C2	H2	272.5	79.1
C6	C1	C8	C7	239.2	119.2
C8	C1	C6	C5	266.1	100.9
C8	C1	C6	H6	86.2	280.9
C8	C1	C7	O71	255.6	0.8
C8	C1	C7	O72	75.6	180.9
C1'	C8	C1	H81	234.7	240.0
C1'	C8	C1	H82	125.3	120.0
C1	C8	C1'	O1'	82.5	359.9
C1	C8	C1'	C2'	269.3	180.0
H81	C8	C1	H82	250.5	240.0
C3	C2	C1	C6	326.4	19.5
C3	C2	C1	C7	201.6	139.9
C3	C2	C1	C8	92.5	259.0
C1	C2	C3	H2	180.0	180.1
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	O4	141.7	100.9
C2	C3	C4	C5	21.9	340.4
C2	C3	C4	H4	152.8	220.0
H2	C2	C1	C6	146.4	199.5
H2	C2	C1	C7	21.6	320.0
H2	C2	C1	C8	272.5	79.1
C1	C2	H2	C3	180.0	179.9
H2	C2	C3	C4	187.6	180.0
H2	C2	C3	H3	7.5	360.0
C4	C3	C2	H2	187.6	180.0
C2	C3	C4	H3	179.9	179.9
O4	C4	C3	C5	119.8	120.5
O4	C4	C3	H4	348.9	240.9
C3	C4	O4	HO4	180.0	180.0
C5	C4	C3	H4	229.1	120.4
C3	C4	C5	C6	336.8	19.6
C3	C4	C5	H5	156.7	199.6
H3	C3	C2	H2	7.5	360.0
C2	C3	H3	C4	180.1	180.1
H3	C3	C4	O4	321.7	280.9
H3	C3	C4	C5	201.9	160.4
H3	C3	C4	H4	332.8	40.1
O4	C4	C3	H3	321.7	280.9
C3	C4	O4	C5	239.8	238.3
C3	C4	O4	H4	164.2	119.2
C5	C4	O4	H4	284.4	240.9
O4	C4	C5	C6	219.0	259.1
O4	C4	C5	H5	38.9	79.0
C1	C6	C5	C4	355.3	360.0
C5	C4	C3	H3	201.9	160.4
C3	C4	C5	O4	117.8	120.5
C3	C4	C5	H4	147.2	239.6
O4	C4	C5	H4	29.4	119.1
C5	C4	O4	HO4	300.2	301.7
C6	C5	C4	H5	180.1	180.0
C4	C5	C6	H6	175.3	180.0
H4	C4	C3	H3	332.8	40.1
C3	C4	H4	O4	338.3	240.8
C3	C4	H4	C5	226.0	121.7
O4	C4	H4	C5	247.7	240.9
H4	C4	O4	HO4	15.8	60.8
H4	C4	C5	C6	189.6	140.0
H4	C4	C5	H5	9.5	320.0
HO4	O4	C4	C5	300.2	301.7
HO4	O4	C4	H4	15.8	60.8
C5	C6	C1	C7	154.6	220.1
C5	C6	C1	C8	266.1	100.9
C1	C6	C5	H6	180.0	180.0
C6	C5	C4	H4	189.6	140.0
C4	C5	C6	H5	179.9	180.0
H5	C5	C4	H4	9.5	320.0
C4	C5	H5	C6	180.1	180.0
H5	C5	C6	H6	355.3	0.0
H6	C6	C1	C7	334.7	40.1
H6	C6	C1	C8	86.2	280.9
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	H5	355.3	0.0
O71	C7	C1	C8	255.6	0.8
C1	C7	O71	O72	180.0	180.0
O71	C7	O72	HO72	359.9	0.0
O72	C7	C1	C8	75.6	180.9
C1	C7	O72	O71	180.0	180.0
C1	C8	C1'	H81	125.2	120.0
C1	C8	C1'	H82	234.7	240.0
H81	C8	C1'	H82	109.5	120.0
O1'	C1'	C8	C2'	173.2	179.9
C8	C1'	C2'	O'L	154.9	359.9
C8	C1'	C2'	O'M	334.7	180.0
C1	C8	H81	C1'	230.3	240.0
C1	C8	H81	H82	115.1	120.0
C1'	C8	H81	H82	244.8	240.0
H81	C8	C1'	O1'	317.2	239.9
H81	C8	C1'	C2'	144.0	60.0
C1	C8	H82	C1'	129.8	120.0
C1	C8	H82	H81	244.9	239.9
C1'	C8	H82	H81	115.1	119.9
H82	C8	C1'	O1'	207.7	120.0
H82	C8	C1'	C2'	34.5	300.1
O1'	C1'	C8	H81	317.2	239.9
O1'	C1'	C8	H82	207.7	120.0
C8	C1'	O1'	C2'	187.1	180.1
O1'	C1'	C2'	O'L	341.9	180.1
O1'	C1'	C2'	O'M	161.7	0.1
C2'	C1'	C8	H81	144.0	60.0
C2'	C1'	C8	H82	34.5	300.1
C8	C1'	C2'	O1'	173.0	179.9
O'L	C2'	C1'	O'M	180.2	180.0
C1'	C2'	O'M	HO2'	180.0	180.0
C1'	C2'	O'L	O'M	179.8	180.0
O'L	C2'	O'M	HO2'	359.8	360.0
C1'	C2'	O'M	O'L	180.2	180.0