PDB Chemical Component PCC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PCC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.467 |
1.468 |
| N |
CD |
1.389 |
1.344 |
| N |
H |
1.000 |
0.970 |
| CA |
CB |
1.492 |
1.545 |
| CA |
C |
1.522 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.396 |
1.546 |
| CB |
HB2 |
1.100 |
1.091 |
| CB |
HB3 |
1.100 |
1.089 |
| CG |
CD |
1.438 |
1.513 |
| CG |
HG2 |
1.100 |
1.091 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
OE1 |
1.280 |
1.213 |
| C |
O |
1.240 |
1.209 |
| C |
OXT |
|
1.342 |
| OXT |
HXT |
|
0.967 |
Bond Angles for PCC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CD |
112.6 |
111.3 |
| CA |
N |
H |
123.7 |
124.4 |
| N |
CA |
CB |
105.6 |
105.5 |
| N |
CA |
C |
110.1 |
110.3 |
| N |
CA |
HA |
112.0 |
110.3 |
| CD |
N |
H |
123.7 |
124.4 |
| N |
CD |
CG |
102.5 |
110.1 |
| N |
CD |
OE1 |
124.9 |
124.9 |
| CB |
CA |
C |
110.6 |
110.3 |
| CB |
CA |
HA |
111.5 |
110.3 |
| CA |
CB |
CG |
103.2 |
101.7 |
| CA |
CB |
HB2 |
111.6 |
110.9 |
| CA |
CB |
HB3 |
113.0 |
111.0 |
| C |
CA |
HA |
107.1 |
110.2 |
| CA |
C |
O |
120.5 |
120.0 |
| CA |
C |
OXT |
|
120.0 |
| CG |
CB |
HB2 |
111.7 |
111.0 |
| CG |
CB |
HB3 |
113.0 |
111.0 |
| CB |
CG |
CD |
116.2 |
104.2 |
| CB |
CG |
HG2 |
107.3 |
110.5 |
| CB |
CG |
HG3 |
105.7 |
110.5 |
| HB2 |
CB |
HB3 |
104.7 |
110.9 |
| CD |
CG |
HG2 |
107.3 |
110.5 |
| CD |
CG |
HG3 |
105.8 |
110.5 |
| CG |
CD |
OE1 |
132.7 |
124.9 |
| HG2 |
CG |
HG3 |
114.9 |
110.5 |
| O |
C |
OXT |
|
120.0 |
| C |
OXT |
HXT |
|
120.0 |
Torsion Angles for PCC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD |
N |
CA |
H |
180.0 |
180.1 |
| CA |
N |
CD |
CG |
0.0 |
359.5 |
| CA |
N |
CD |
OE1 |
180.3 |
179.6 |
| CB |
CA |
N |
C |
240.6 |
119.1 |
| CB |
CA |
N |
HA |
121.5 |
240.9 |
| N |
CA |
CB |
CG |
0.8 |
334.6 |
| N |
CA |
CB |
HB2 |
120.8 |
92.7 |
| N |
CA |
CB |
HB3 |
238.4 |
216.4 |
| C |
CA |
N |
HA |
240.9 |
121.9 |
| N |
CA |
C |
O |
177.6 |
16.1 |
| N |
CA |
C |
OXT |
|
196.0 |
| CA |
N |
CD |
H |
180.0 |
179.9 |
| CD |
N |
CA |
CB |
359.5 |
17.0 |
| CD |
N |
CA |
C |
118.9 |
258.0 |
| CD |
N |
CA |
HA |
238.0 |
136.1 |
| CB |
CG |
CD |
N |
0.5 |
343.8 |
| N |
CD |
CG |
HG2 |
240.6 |
225.1 |
| N |
CD |
CG |
HG3 |
117.5 |
102.5 |
| CG |
CD |
N |
OE1 |
179.7 |
179.9 |
| CA |
N |
H |
CD |
180.0 |
180.1 |
| H |
N |
CA |
CB |
179.5 |
197.0 |
| H |
N |
CA |
C |
298.9 |
77.9 |
| H |
N |
CA |
HA |
58.0 |
316.1 |
| H |
N |
CD |
CG |
180.0 |
179.6 |
| H |
N |
CD |
OE1 |
0.3 |
359.7 |
| CB |
CA |
N |
CD |
359.5 |
17.0 |
| CB |
CA |
N |
H |
179.5 |
197.0 |
| N |
CA |
CB |
C |
119.0 |
241.0 |
| N |
CA |
CB |
HA |
238.1 |
119.1 |
| C |
CA |
CB |
HA |
119.1 |
238.1 |
| CB |
CA |
C |
O |
293.9 |
260.0 |
| CB |
CA |
C |
OXT |
|
79.9 |
| CG |
CB |
CA |
HB2 |
240.0 |
241.9 |
| CG |
CB |
CA |
HB3 |
122.3 |
118.1 |
| CA |
CB |
CG |
CD |
359.2 |
24.8 |
| CA |
CB |
CG |
HG2 |
119.1 |
143.5 |
| CA |
CB |
CG |
HG3 |
242.2 |
266.1 |
| HB2 |
CB |
CA |
HB3 |
242.4 |
236.2 |
| C |
CA |
N |
CD |
118.9 |
258.0 |
| C |
CA |
N |
H |
298.9 |
77.9 |
| N |
CA |
C |
CB |
243.7 |
116.1 |
| N |
CA |
C |
HA |
122.0 |
238.0 |
| CB |
CA |
C |
HA |
238.3 |
121.9 |
| C |
CA |
CB |
CG |
241.7 |
93.6 |
| C |
CA |
CB |
HB2 |
1.7 |
211.7 |
| C |
CA |
CB |
HB3 |
119.4 |
335.5 |
| O |
C |
CA |
OXT |
|
180.1 |
| CA |
C |
OXT |
HXT |
|
180.0 |
| HA |
CA |
N |
CD |
238.0 |
136.1 |
| HA |
CA |
N |
H |
58.0 |
316.1 |
| N |
CA |
HA |
CB |
118.1 |
243.9 |
| N |
CA |
HA |
C |
239.2 |
121.9 |
| CB |
CA |
HA |
C |
121.1 |
238.1 |
| HA |
CA |
CB |
CG |
122.6 |
215.5 |
| HA |
CA |
CB |
HB2 |
242.7 |
333.6 |
| HA |
CA |
CB |
HB3 |
0.3 |
97.4 |
| HA |
CA |
C |
O |
55.6 |
138.1 |
| HA |
CA |
C |
OXT |
|
318.0 |
| N |
CD |
CG |
CB |
0.5 |
343.8 |
| CG |
CB |
CA |
C |
241.7 |
93.6 |
| CG |
CB |
CA |
HA |
122.6 |
215.5 |
| CA |
CB |
CG |
HB2 |
120.0 |
118.1 |
| CA |
CB |
CG |
HB3 |
237.7 |
241.9 |
| HB2 |
CB |
CG |
HB3 |
117.7 |
123.8 |
| CD |
CG |
CB |
HG2 |
240.0 |
241.3 |
| CD |
CG |
CB |
HG3 |
117.0 |
118.7 |
| CB |
CG |
CD |
OE1 |
180.2 |
163.7 |
| HG2 |
CG |
CB |
HG3 |
236.9 |
237.4 |
| HB2 |
CB |
CA |
C |
1.7 |
211.7 |
| HB2 |
CB |
CA |
HA |
242.7 |
333.6 |
| CA |
CB |
HB2 |
CG |
245.1 |
247.7 |
| CA |
CB |
HB2 |
HB3 |
122.5 |
123.8 |
| CG |
CB |
HB2 |
HB3 |
237.4 |
236.1 |
| HB2 |
CB |
CG |
CD |
239.1 |
266.7 |
| HB2 |
CB |
CG |
HG2 |
359.1 |
25.4 |
| HB2 |
CB |
CG |
HG3 |
122.2 |
148.0 |
| HB3 |
CB |
CA |
C |
119.4 |
335.5 |
| HB3 |
CB |
CA |
HA |
0.3 |
97.4 |
| CA |
CB |
HB3 |
CG |
116.6 |
112.4 |
| CA |
CB |
HB3 |
HB2 |
238.3 |
236.2 |
| CG |
CB |
HB3 |
HB2 |
121.7 |
123.8 |
| HB3 |
CB |
CG |
CD |
121.5 |
142.9 |
| HB3 |
CB |
CG |
HG2 |
241.4 |
261.6 |
| HB3 |
CB |
CG |
HG3 |
4.5 |
24.2 |
| CG |
CD |
N |
H |
180.0 |
179.6 |
| N |
CD |
CG |
OE1 |
180.4 |
180.1 |
| CD |
CG |
CB |
HB2 |
239.1 |
266.7 |
| CD |
CG |
CB |
HB3 |
121.5 |
142.9 |
| CB |
CG |
CD |
HG2 |
120.0 |
118.7 |
| CB |
CG |
CD |
HG3 |
243.1 |
241.3 |
| HG2 |
CG |
CD |
HG3 |
123.1 |
122.6 |
| HG2 |
CG |
CB |
HB2 |
359.1 |
25.4 |
| HG2 |
CG |
CB |
HB3 |
241.4 |
261.6 |
| CB |
CG |
HG2 |
CD |
234.5 |
245.2 |
| CB |
CG |
HG2 |
HG3 |
117.2 |
122.6 |
| CD |
CG |
HG2 |
HG3 |
242.7 |
237.4 |
| HG2 |
CG |
CD |
OE1 |
60.2 |
45.0 |
| HG3 |
CG |
CB |
HB2 |
122.2 |
148.0 |
| HG3 |
CG |
CB |
HB3 |
4.5 |
24.2 |
| CB |
CG |
HG3 |
CD |
123.8 |
114.8 |
| CB |
CG |
HG3 |
HG2 |
241.9 |
237.4 |
| CD |
CG |
HG3 |
HG2 |
118.1 |
122.6 |
| HG3 |
CG |
CD |
OE1 |
297.1 |
282.4 |
| OE1 |
CD |
N |
H |
0.3 |
359.7 |
| N |
CD |
OE1 |
CG |
179.6 |
179.9 |
| OE1 |
CD |
CG |
HG2 |
60.2 |
45.0 |
| OE1 |
CD |
CG |
HG3 |
297.1 |
282.4 |
| O |
C |
CA |
HA |
55.6 |
138.1 |
| CA |
C |
O |
OXT |
|
179.9 |
| O |
C |
OXT |
HXT |
|
359.9 |
| OXT |
C |
CA |
HA |
|
318.0 |
| CA |
C |
OXT |
O |
|
180.1 |