PDB Chemical Component PAU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PAU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.423	1.430
O2	HO	0.950	0.968
C1	C2	1.588	1.530
C1	C3	1.587	1.529
C1	C4	1.506	1.530
C1	C5	1.681	1.529
C2	H21	1.100	1.090
C2	H22	1.100	1.089
C3	H31	1.100	1.090
C3	H32	1.100	1.090
C3	H33	1.100	1.090
C4	H41	1.100	1.091
C4	H42	1.100	1.089
C4	H43	1.100	1.090
C5	O5'	1.467	1.429
C5	C6	1.602	1.507
C5	H5	1.100	1.090
O5'	H5'	0.950	0.967
C6	O6'	1.337	1.213
C6	N	1.320	1.349
N	C8	1.490	1.465
N	H	1.000	0.969
C8	C9	1.555	1.530
C8	H81	1.100	1.090
C8	H82	1.100	1.090
C9	C	1.546	1.507
C9	H91	1.100	1.090
C9	H92	1.100	1.090
C	OXT	1.327	1.342
C	O	1.324	1.209
OXT	HXT	0.950	0.967

Bond Angles for PAU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	HO	109.5	113.9
O2	C2	C1	113.0	109.4
O2	C2	H21	108.3	109.5
O2	C2	H22	108.3	109.5
C2	C1	C3	107.8	109.5
C2	C1	C4	104.9	109.5
C2	C1	C5	112.3	109.5
C1	C2	H21	108.3	109.5
C1	C2	H22	108.3	109.4
C3	C1	C4	111.9	109.5
C3	C1	C5	107.5	109.5
C1	C3	H31	109.5	109.5
C1	C3	H32	109.4	109.5
C1	C3	H33	109.5	109.5
C4	C1	C5	112.3	109.5
C1	C4	H41	109.5	109.5
C1	C4	H42	109.5	109.5
C1	C4	H43	109.5	109.5
C1	C5	O5'	109.1	109.5
C1	C5	C6	113.3	109.5
C1	C5	H5	106.2	109.5
H21	C2	H22	110.6	109.5
H31	C3	H32	109.5	109.4
H31	C3	H33	109.5	109.4
H32	C3	H33	109.5	109.5
H41	C4	H42	109.5	109.4
H41	C4	H43	109.5	109.5
H42	C4	H43	109.5	109.5
O5'	C5	C6	106.4	109.4
O5'	C5	H5	113.0	109.5
C5	O5'	H5'	109.5	114.0
C6	C5	H5	108.9	109.4
C5	C6	O6'	119.0	120.0
C5	C6	N	119.4	120.0
O6'	C6	N	121.6	120.0
C6	N	C8	123.6	119.9
C6	N	H	118.2	120.0
C8	N	H	118.2	120.1
N	C8	C9	112.3	109.4
N	C8	H81	108.6	109.5
N	C8	H82	108.5	109.5
C9	C8	H81	108.5	109.5
C9	C8	H82	108.5	109.4
C8	C9	C	112.3	109.5
C8	C9	H91	108.5	109.5
C8	C9	H92	108.6	109.5
H81	C8	H82	110.4	109.5
C	C9	H91	108.6	109.5
C	C9	H92	108.5	109.5
C9	C	OXT	122.6	120.0
C9	C	O	114.3	120.0
H91	C9	H92	110.4	109.4
OXT	C	O	123.2	120.0
C	OXT	HXT	109.5	117.0

Torsion Angles for PAU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C1	C3	54.2	300.0
O2	C2	C1	C4	173.6	60.0
O2	C2	C1	C5	295.9	180.0
C1	C2	O2	H21	240.0	240.0
C1	C2	O2	H22	120.0	119.9
H21	C2	O2	H22	240.0	239.9
HO	O2	C2	C1	180.0	180.0
HO	O2	C2	H21	300.0	300.0
HO	O2	C2	H22	60.0	60.1
C1	C2	O2	HO	180.0	180.0
O2	C2	C1	H21	120.0	120.0
O2	C2	C1	H22	240.0	240.1
C3	C1	C2	C4	240.6	240.0
C3	C1	C2	C5	118.3	120.0
C2	C1	C3	H31	180.0	66.4
C2	C1	C3	H32	300.0	186.4
C2	C1	C3	H33	60.0	306.5
C4	C1	C2	C5	237.7	240.0
C2	C1	C4	H41	180.0	63.4
C2	C1	C4	H42	300.0	183.4
C2	C1	C4	H43	60.0	303.4
C2	C1	C5	O5'	70.8	294.3
C2	C1	C5	C6	189.1	54.3
C2	C1	C5	H5	308.6	174.2
H21	C2	C1	H22	120.0	120.0
C2	C1	C3	C4	114.8	120.0
C2	C1	C3	C5	238.7	240.0
C3	C1	C2	H21	294.2	180.0
C3	C1	C2	H22	174.2	60.0
C4	C1	C3	C5	123.8	120.0
C3	C1	C4	H41	296.6	183.4
C3	C1	C4	H42	56.6	303.4
C3	C1	C4	H43	176.6	63.4
C3	C1	C5	O5'	312.4	174.3
C3	C1	C5	C6	70.7	294.2
C3	C1	C5	H5	190.2	54.2
H31	C3	C1	H32	240.0	240.0
H31	C3	C1	H33	120.0	120.0
H32	C3	C1	H33	240.0	240.0
C2	C1	C4	C3	243.4	240.0
C2	C1	C4	C5	122.3	120.0
C4	C1	C2	H21	53.6	300.0
C4	C1	C2	H22	293.6	180.0
C3	C1	C4	C5	238.9	240.0
C4	C1	C3	H31	65.2	306.4
C4	C1	C3	H32	185.2	66.4
C4	C1	C3	H33	305.2	186.4
C4	C1	C5	O5'	188.8	54.3
C4	C1	C5	C6	307.1	174.3
C4	C1	C5	H5	66.6	294.3
H41	C4	C1	H42	240.0	240.0
H41	C4	C1	H43	120.0	120.0
H42	C4	C1	H43	240.0	240.0
C2	C1	C5	C3	118.4	120.0
C2	C1	C5	C4	242.0	240.0
C5	C1	C2	H21	175.9	60.0
C5	C1	C2	H22	55.9	299.9
C3	C1	C5	C4	123.6	120.0
C5	C1	C3	H31	301.4	186.5
C5	C1	C3	H32	61.3	306.4
C5	C1	C3	H33	181.3	66.5
C5	C1	C4	H41	57.7	303.4
C5	C1	C4	H42	177.7	63.4
C5	C1	C4	H43	297.7	183.4
O5'	C5	C1	C6	241.7	240.1
O5'	C5	C1	H5	122.2	120.1
C1	C5	O5'	H5'	108.5	59.9
C6	C5	C1	H5	240.5	240.0
C1	C5	C6	O6'	271.6	248.2
C1	C5	C6	N	90.2	68.2
H21	C2	O2	HO	300.0	300.0
O2	C2	H21	C1	237.1	240.0
O2	C2	H21	H22	118.6	120.0
H21	C2	C1	C3	294.2	180.0
H21	C2	C1	C4	53.6	300.0
H21	C2	C1	C5	175.9	60.0
C1	C2	H21	H22	241.5	240.0
H22	C2	O2	HO	60.0	60.1
O2	C2	H22	C1	122.9	119.9
O2	C2	H22	H21	241.5	239.9
H22	C2	C1	C3	174.2	60.0
H22	C2	C1	C4	293.6	180.0
H22	C2	C1	C5	55.9	299.9
C1	C2	H22	H21	118.5	120.0
H31	C3	C1	C4	65.2	306.4
H31	C3	C1	C5	301.4	186.5
C1	C3	H31	H32	120.0	120.0
C1	C3	H31	H33	240.0	240.0
H32	C3	H31	H33	120.0	120.0
H32	C3	C1	C4	185.2	66.4
H32	C3	C1	C5	61.3	306.4
C1	C3	H32	H31	240.0	240.0
C1	C3	H32	H33	120.0	120.1
H31	C3	H32	H33	240.0	240.1
H33	C3	C1	C4	305.2	186.4
H33	C3	C1	C5	181.3	66.5
C1	C3	H33	H31	120.0	120.0
C1	C3	H33	H32	240.0	240.0
H31	C3	H33	H32	120.0	119.9
H41	C4	C1	C5	57.7	303.4
C1	C4	H41	H42	120.0	120.0
C1	C4	H41	H43	240.0	240.0
H42	C4	H41	H43	120.0	120.0
H42	C4	C1	C5	177.7	63.4
C1	C4	H42	H41	240.0	240.0
C1	C4	H42	H43	120.0	120.0
H41	C4	H42	H43	240.0	240.0
H43	C4	C1	C5	297.7	183.4
C1	C4	H43	H41	120.0	120.0
C1	C4	H43	H42	240.0	240.0
H41	C4	H43	H42	120.0	120.0
C1	C5	O5'	C6	122.6	120.0
C1	C5	O5'	H5	242.1	239.9
C6	C5	O5'	H5	119.5	119.9
O5'	C5	C6	O6'	31.5	8.2
O5'	C5	C6	N	210.1	188.2
C1	C5	C6	O5'	240.1	240.0
C1	C5	C6	H5	117.9	120.0
O5'	C5	C6	H5	237.8	240.0
C6	C5	O5'	H5'	345.9	299.9
O6'	C6	C5	N	181.4	180.0
C5	C6	N	C8	185.0	184.4
C5	C6	N	H	5.0	4.5
C1	C5	H5	O5'	119.6	120.1
C1	C5	H5	C6	237.7	240.0
O5'	C5	H5	C6	118.1	119.9
H5	C5	O5'	H5'	226.4	180.0
H5	C5	C6	O6'	153.6	128.1
H5	C5	C6	N	332.2	308.1
H5'	O5'	C5	C6	345.9	299.9
H5'	O5'	C5	H5	226.4	180.0
O6'	C6	C5	H5	153.6	128.1
C5	C6	O6'	N	178.6	180.0
O6'	C6	N	C8	3.6	4.4
O6'	C6	N	H	183.6	184.4
N	C6	C5	H5	332.2	308.1
C5	C6	N	O6'	181.4	180.0
C8	N	C6	H	180.0	180.0
C6	N	C8	C9	251.1	180.0
C6	N	C8	H81	11.1	300.0
C6	N	C8	H82	131.1	60.0
C6	N	C8	H	180.0	180.0
C9	C8	N	H81	240.0	240.0
C9	C8	N	H82	120.0	120.0
N	C8	C9	C	48.2	180.0
N	C8	C9	H91	168.2	300.0
N	C8	C9	H92	288.2	60.0
H81	C8	N	H82	240.0	239.9
C6	N	H	C8	180.0	180.0
H	N	C8	C9	71.1	360.0
H	N	C8	H81	191.1	119.9
H	N	C8	H82	311.1	240.0
C9	C8	N	H	71.1	360.0
N	C8	C9	H81	120.0	120.0
N	C8	C9	H82	240.0	240.0
H81	C8	C9	H82	120.0	120.0
C	C9	C8	H91	240.0	240.0
C	C9	C8	H92	120.0	120.0
C8	C9	C	OXT	272.7	180.0
C8	C9	C	O	92.7	0.0
H91	C9	C8	H92	240.0	240.1
H81	C8	N	H	191.1	119.9
N	C8	H81	C9	237.7	240.1
N	C8	H81	H82	118.9	120.1
C9	C8	H81	H82	241.2	240.0
H81	C8	C9	C	288.2	60.0
H81	C8	C9	H91	48.2	180.0
H81	C8	C9	H92	168.2	300.0
H82	C8	N	H	311.1	240.0
N	C8	H82	C9	122.4	120.0
N	C8	H82	H81	241.1	240.0
C9	C8	H82	H81	118.8	120.0
H82	C8	C9	C	168.2	300.0
H82	C8	C9	H91	288.2	60.0
H82	C8	C9	H92	48.2	180.0
C	C9	C8	H81	288.2	60.0
C	C9	C8	H82	168.2	300.0
C8	C9	C	H91	120.0	120.0
C8	C9	C	H92	240.0	240.0
H91	C9	C	H92	120.0	119.9
OXT	C	C9	O	179.9	179.9
C9	C	OXT	HXT	180.1	180.0
H91	C9	C8	H81	48.2	180.0
H91	C9	C8	H82	288.2	60.0
C8	C9	H91	C	237.7	239.9
C8	C9	H91	H92	118.9	120.0
C	C9	H91	H92	241.2	240.0
H91	C9	C	OXT	152.7	59.9
H91	C9	C	O	332.7	240.0
H92	C9	C8	H81	168.2	300.0
H92	C9	C8	H82	48.2	180.0
C8	C9	H92	C	122.3	120.0
C8	C9	H92	H91	241.2	240.0
C	C9	H92	H91	118.9	120.0
H92	C9	C	OXT	32.7	300.0
H92	C9	C	O	212.7	120.1
OXT	C	C9	H91	152.7	59.9
OXT	C	C9	H92	32.7	300.0
C9	C	OXT	O	180.1	180.1
O	C	C9	H91	332.7	240.0
O	C	C9	H92	212.7	120.1
C9	C	O	OXT	179.9	179.9
O	C	OXT	HXT	0.0	359.9
HXT	OXT	C	O	0.0	359.9