PDB Chemical Component OXE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OXE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.374 |
1.382 |
| C1 |
C6 |
1.443 |
1.382 |
| C1 |
C1' |
1.508 |
1.507 |
| C2 |
C3 |
1.392 |
1.382 |
| C2 |
C2' |
1.513 |
1.507 |
| C3 |
C4 |
1.400 |
1.382 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C5 |
1.399 |
1.382 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.391 |
1.382 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
| C1' |
H1'1 |
1.115 |
1.090 |
| C1' |
H1'2 |
1.115 |
1.089 |
| C1' |
H1'3 |
1.115 |
1.090 |
| C2' |
H2'1 |
1.115 |
1.090 |
| C2' |
H2'2 |
1.115 |
1.089 |
| C2' |
H2'3 |
1.114 |
1.089 |
Bond Angles for OXE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
120.2 |
120.0 |
| C2 |
C1 |
C1' |
117.4 |
120.0 |
| C1 |
C2 |
C3 |
119.7 |
120.0 |
| C1 |
C2 |
C2' |
119.2 |
120.0 |
| C6 |
C1 |
C1' |
122.4 |
120.0 |
| C1 |
C6 |
C5 |
119.4 |
120.0 |
| C1 |
C6 |
H6 |
122.1 |
120.0 |
| C1 |
C1' |
H1'1 |
117.4 |
109.4 |
| C1 |
C1' |
H1'2 |
109.3 |
109.5 |
| C1 |
C1' |
H1'3 |
109.3 |
109.5 |
| C3 |
C2 |
C2' |
120.8 |
120.0 |
| C2 |
C3 |
C4 |
120.4 |
120.0 |
| C2 |
C3 |
H3 |
119.5 |
120.0 |
| C2 |
C2' |
H2'1 |
119.1 |
109.5 |
| C2 |
C2' |
H2'2 |
108.7 |
109.5 |
| C2 |
C2' |
H2'3 |
108.7 |
109.4 |
| C4 |
C3 |
H3 |
120.0 |
120.0 |
| C3 |
C4 |
C5 |
120.5 |
120.0 |
| C3 |
C4 |
H4 |
119.8 |
120.0 |
| C5 |
C4 |
H4 |
119.7 |
120.0 |
| C4 |
C5 |
C6 |
119.3 |
120.0 |
| C4 |
C5 |
H5 |
120.6 |
120.0 |
| C6 |
C5 |
H5 |
120.0 |
120.0 |
| C5 |
C6 |
H6 |
118.5 |
120.0 |
| H1'1 |
C1' |
H1'2 |
109.4 |
109.4 |
| H1'1 |
C1' |
H1'3 |
109.4 |
109.5 |
| H1'2 |
C1' |
H1'3 |
100.7 |
109.5 |
| H2'1 |
C2' |
H2'2 |
108.7 |
109.5 |
| H2'1 |
C2' |
H2'3 |
108.8 |
109.4 |
| H2'2 |
C2' |
H2'3 |
101.3 |
109.5 |
Torsion Angles for OXE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C1' |
179.0 |
179.8 |
| C2 |
C1 |
C6 |
C5 |
357.9 |
0.2 |
| C2 |
C1 |
C6 |
H6 |
178.0 |
180.2 |
| C2 |
C1 |
C1' |
H1'1 |
180.0 |
269.7 |
| C2 |
C1 |
C1' |
H1'2 |
305.3 |
29.7 |
| C2 |
C1 |
C1' |
H1'3 |
54.7 |
149.8 |
| C3 |
C2 |
C1 |
C2' |
173.1 |
179.6 |
| C1 |
C2 |
C3 |
C4 |
7.4 |
0.4 |
| C1 |
C2 |
C3 |
H3 |
187.4 |
180.2 |
| C1 |
C2 |
C2' |
H2'1 |
180.0 |
269.6 |
| C1 |
C2 |
C2' |
H2'2 |
305.2 |
29.6 |
| C1 |
C2 |
C2' |
H2'3 |
54.7 |
149.6 |
| C2 |
C1 |
C6 |
C1' |
181.0 |
180.2 |
| C6 |
C1 |
C2 |
C3 |
356.4 |
359.6 |
| C6 |
C1 |
C2 |
C2' |
183.2 |
179.9 |
| C6 |
C1 |
C1' |
H1'1 |
1.0 |
90.0 |
| C6 |
C1 |
C1' |
H1'2 |
126.3 |
209.9 |
| C6 |
C1 |
C1' |
H1'3 |
235.7 |
330.0 |
| C4 |
C5 |
C6 |
C1 |
4.0 |
360.0 |
| C1 |
C6 |
C5 |
H5 |
184.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
C1' |
C6 |
179.0 |
179.8 |
| C1' |
C1 |
C2 |
C3 |
177.4 |
179.8 |
| C1' |
C1 |
C2 |
C2' |
4.2 |
0.2 |
| C1' |
C1 |
C6 |
C5 |
176.9 |
180.0 |
| C1' |
C1 |
C6 |
H6 |
356.9 |
360.0 |
| H1'1 |
C1' |
C1 |
H1'2 |
234.7 |
240.0 |
| H1'1 |
C1' |
C1 |
H1'3 |
125.3 |
120.0 |
| H1'2 |
C1' |
C1 |
H1'3 |
250.6 |
239.9 |
| C3 |
C2 |
C1 |
C6 |
356.4 |
359.6 |
| C3 |
C2 |
C1 |
C1' |
177.4 |
179.8 |
| C1 |
C2 |
C3 |
C2' |
187.0 |
180.4 |
| C3 |
C2 |
C2' |
H2'1 |
7.0 |
90.0 |
| C3 |
C2 |
C2' |
H2'2 |
132.2 |
210.0 |
| C3 |
C2 |
C2' |
H2'3 |
241.7 |
330.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.2 |
| C2 |
C3 |
C4 |
C5 |
354.5 |
359.8 |
| C2 |
C3 |
C4 |
H4 |
174.4 |
179.9 |
| C2' |
C2 |
C1 |
C6 |
183.2 |
179.9 |
| C2' |
C2 |
C1 |
C1' |
4.2 |
0.2 |
| C1 |
C2 |
C2' |
C3 |
173.0 |
179.6 |
| C2' |
C2 |
C3 |
C4 |
180.4 |
180.1 |
| C2' |
C2 |
C3 |
H3 |
0.4 |
359.8 |
| H2'1 |
C2' |
C2 |
H2'2 |
234.8 |
240.0 |
| H2'1 |
C2' |
C2 |
H2'3 |
125.3 |
119.9 |
| H2'2 |
C2' |
C2 |
H2'3 |
250.5 |
240.0 |
| C4 |
C3 |
C2 |
C2' |
180.4 |
180.1 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.8 |
| C5 |
C4 |
C3 |
H4 |
180.1 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
359.7 |
0.0 |
| C3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
| H3 |
C3 |
C2 |
C2' |
0.4 |
359.8 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.2 |
| H3 |
C3 |
C4 |
C5 |
174.5 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
354.5 |
0.1 |
| C1 |
C6 |
C5 |
C4 |
4.0 |
360.0 |
| C5 |
C4 |
C3 |
H3 |
174.5 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
179.9 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
183.9 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
354.5 |
0.1 |
| C3 |
C4 |
H4 |
C5 |
180.1 |
179.9 |
| H4 |
C4 |
C5 |
C6 |
179.8 |
179.9 |
| H4 |
C4 |
C5 |
H5 |
359.8 |
359.9 |
| C5 |
C6 |
C1 |
C1' |
176.9 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
179.8 |
179.9 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
359.8 |
359.9 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
3.9 |
0.0 |
| H6 |
C6 |
C1 |
C1' |
356.9 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
3.9 |
0.0 |
| C1 |
C1' |
H1'1 |
H1'2 |
125.3 |
120.0 |
| C1 |
C1' |
H1'1 |
H1'3 |
234.8 |
240.0 |
| H1'2 |
C1' |
H1'1 |
H1'3 |
109.5 |
120.1 |
| C1 |
C1' |
H1'2 |
H1'1 |
230.2 |
240.1 |
| C1 |
C1' |
H1'2 |
H1'3 |
115.0 |
120.0 |
| H1'1 |
C1' |
H1'2 |
H1'3 |
244.8 |
240.0 |
| C1 |
C1' |
H1'3 |
H1'1 |
129.8 |
119.9 |
| C1 |
C1' |
H1'3 |
H1'2 |
245.0 |
239.9 |
| H1'1 |
C1' |
H1'3 |
H1'2 |
115.2 |
120.0 |
| C2 |
C2' |
H2'1 |
H2'2 |
125.2 |
120.0 |
| C2 |
C2' |
H2'1 |
H2'3 |
234.7 |
240.1 |
| H2'2 |
C2' |
H2'1 |
H2'3 |
109.5 |
120.0 |
| C2 |
C2' |
H2'2 |
H2'1 |
228.9 |
240.0 |
| C2 |
C2' |
H2'2 |
H2'3 |
114.4 |
120.0 |
| H2'1 |
C2' |
H2'2 |
H2'3 |
245.5 |
240.0 |
| C2 |
C2' |
H2'3 |
H2'1 |
131.1 |
120.0 |
| C2 |
C2' |
H2'3 |
H2'2 |
245.6 |
240.0 |
| H2'1 |
C2' |
H2'3 |
H2'2 |
114.5 |
120.0 |