PDB Chemical Component OPE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OPE
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CA |
CB |
1.080 |
1.529 |
CA |
O4 |
1.482 |
1.428 |
CA |
HA1 |
1.100 |
1.090 |
CA |
HA2 |
1.100 |
1.090 |
CB |
N |
1.708 |
1.468 |
CB |
HB1 |
1.100 |
1.090 |
CB |
HB2 |
1.100 |
1.090 |
O1 |
P |
1.454 |
1.609 |
O1 |
HO1 |
0.950 |
0.967 |
O2 |
P |
1.478 |
1.609 |
O2 |
HO2 |
0.950 |
0.968 |
O3 |
P |
1.676 |
1.480 |
O4 |
P |
1.655 |
1.608 |
N |
HN1 |
1.000 |
1.010 |
N |
HN2 |
1.000 |
1.008 |
Bond Angles for OPE
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CB |
CA |
O4 |
132.5 |
109.5 |
CB |
CA |
HA1 |
97.1 |
109.5 |
CB |
CA |
HA2 |
102.4 |
109.5 |
CA |
CB |
N |
91.6 |
109.5 |
CA |
CB |
HB1 |
119.3 |
109.5 |
CA |
CB |
HB2 |
115.9 |
109.5 |
O4 |
CA |
HA1 |
97.1 |
109.5 |
O4 |
CA |
HA2 |
102.4 |
109.4 |
CA |
O4 |
P |
132.1 |
106.9 |
HA1 |
CA |
HA2 |
129.9 |
109.5 |
N |
CB |
HB1 |
119.3 |
109.4 |
N |
CB |
HB2 |
115.9 |
109.5 |
CB |
N |
HN1 |
109.5 |
106.7 |
CB |
N |
HN2 |
109.5 |
106.7 |
HB1 |
CB |
HB2 |
96.6 |
109.4 |
P |
O1 |
HO1 |
109.5 |
106.8 |
O1 |
P |
O2 |
115.9 |
109.5 |
O1 |
P |
O3 |
110.9 |
109.4 |
O1 |
P |
O4 |
112.5 |
109.5 |
P |
O2 |
HO2 |
109.5 |
106.8 |
O2 |
P |
O3 |
111.8 |
109.4 |
O2 |
P |
O4 |
99.6 |
109.5 |
O3 |
P |
O4 |
105.2 |
109.5 |
HN1 |
N |
HN2 |
109.4 |
106.7 |
Torsion Angles for OPE
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O4 |
CA |
CB |
HA1 |
106.4 |
120.0 |
O4 |
CA |
CB |
HA2 |
240.0 |
240.0 |
CB |
CA |
O4 |
P |
126.4 |
180.0 |
HA1 |
CA |
CB |
HA2 |
133.6 |
120.0 |
N |
CB |
CA |
HB1 |
125.2 |
120.0 |
N |
CB |
CA |
HB2 |
240.0 |
240.0 |
CA |
CB |
N |
HN1 |
88.7 |
180.0 |
CA |
CB |
N |
HN2 |
328.7 |
293.8 |
HB1 |
CB |
CA |
HB2 |
114.8 |
120.0 |
CB |
CA |
O4 |
HA1 |
253.6 |
240.0 |
CB |
CA |
O4 |
HA2 |
120.0 |
120.1 |
O4 |
CA |
CB |
N |
295.5 |
60.0 |
O4 |
CA |
CB |
HB1 |
170.3 |
300.0 |
O4 |
CA |
CB |
HB2 |
55.5 |
180.1 |
HA1 |
CA |
O4 |
HA2 |
226.5 |
240.1 |
O1 |
P |
O4 |
CA |
321.3 |
300.0 |
O2 |
P |
O4 |
CA |
198.0 |
180.0 |
O3 |
P |
O4 |
CA |
82.1 |
60.0 |
CB |
CA |
HA1 |
O4 |
134.5 |
120.0 |
CB |
CA |
HA1 |
HA2 |
247.2 |
239.9 |
HA1 |
CA |
CB |
N |
189.1 |
300.0 |
HA1 |
CA |
CB |
HB1 |
63.9 |
180.0 |
HA1 |
CA |
CB |
HB2 |
309.1 |
60.0 |
O4 |
CA |
HA1 |
HA2 |
112.7 |
119.9 |
HA1 |
CA |
O4 |
P |
232.8 |
300.0 |
CB |
CA |
HA2 |
O4 |
220.8 |
240.0 |
CB |
CA |
HA2 |
HA1 |
110.4 |
120.0 |
HA2 |
CA |
CB |
N |
55.5 |
180.0 |
HA2 |
CA |
CB |
HB1 |
290.3 |
60.0 |
HA2 |
CA |
CB |
HB2 |
175.5 |
300.0 |
O4 |
CA |
HA2 |
HA1 |
249.6 |
240.0 |
HA2 |
CA |
O4 |
P |
6.4 |
60.0 |
N |
CB |
CA |
O4 |
295.5 |
60.0 |
N |
CB |
CA |
HA1 |
189.1 |
300.0 |
N |
CB |
CA |
HA2 |
55.5 |
180.0 |
CA |
CB |
N |
HB1 |
234.7 |
240.0 |
CA |
CB |
N |
HB2 |
120.0 |
120.0 |
HB1 |
CB |
N |
HB2 |
245.3 |
240.0 |
HN1 |
N |
CB |
HN2 |
120.0 |
246.2 |
HB1 |
CB |
CA |
O4 |
170.3 |
300.0 |
HB1 |
CB |
CA |
HA1 |
63.9 |
180.0 |
HB1 |
CB |
CA |
HA2 |
290.3 |
60.0 |
CA |
CB |
HB1 |
N |
110.6 |
120.0 |
CA |
CB |
HB1 |
HB2 |
235.3 |
240.0 |
N |
CB |
HB1 |
HB2 |
124.7 |
120.0 |
HB1 |
CB |
N |
HN1 |
214.0 |
300.0 |
HB1 |
CB |
N |
HN2 |
94.0 |
53.8 |
HB2 |
CB |
CA |
O4 |
55.5 |
180.1 |
HB2 |
CB |
CA |
HA1 |
309.1 |
60.0 |
HB2 |
CB |
CA |
HA2 |
175.5 |
300.0 |
CA |
CB |
HB2 |
N |
254.3 |
239.9 |
CA |
CB |
HB2 |
HB1 |
127.2 |
120.0 |
N |
CB |
HB2 |
HB1 |
232.9 |
240.0 |
HB2 |
CB |
N |
HN1 |
328.7 |
59.9 |
HB2 |
CB |
N |
HN2 |
208.7 |
173.8 |
CA |
O4 |
P |
O1 |
321.3 |
300.0 |
O1 |
P |
O2 |
HO2 |
77.9 |
59.9 |
O2 |
P |
O1 |
O3 |
231.2 |
240.1 |
O2 |
P |
O1 |
O4 |
113.7 |
120.1 |
O3 |
P |
O1 |
O4 |
242.5 |
240.0 |
HO1 |
O1 |
P |
O2 |
103.0 |
60.0 |
HO1 |
O1 |
P |
O3 |
231.8 |
180.0 |
HO1 |
O1 |
P |
O4 |
349.3 |
300.0 |
CA |
O4 |
P |
O2 |
198.0 |
180.0 |
O2 |
P |
O1 |
HO1 |
103.0 |
60.0 |
O1 |
P |
O2 |
O3 |
128.3 |
119.9 |
O1 |
P |
O2 |
O4 |
239.1 |
240.0 |
O3 |
P |
O2 |
O4 |
110.7 |
120.0 |
HO2 |
O2 |
P |
O3 |
309.6 |
300.0 |
HO2 |
O2 |
P |
O4 |
198.8 |
180.0 |
CA |
O4 |
P |
O3 |
82.1 |
60.0 |
O3 |
P |
O1 |
HO1 |
231.8 |
180.0 |
O1 |
P |
O3 |
O2 |
229.0 |
240.0 |
O1 |
P |
O3 |
O4 |
121.9 |
120.0 |
O3 |
P |
O2 |
HO2 |
309.6 |
300.0 |
O2 |
P |
O3 |
O4 |
252.9 |
239.9 |
P |
O4 |
CA |
HA1 |
232.8 |
300.0 |
P |
O4 |
CA |
HA2 |
6.4 |
60.0 |
O4 |
P |
O1 |
HO1 |
349.3 |
300.0 |
O1 |
P |
O4 |
O2 |
123.4 |
120.1 |
O1 |
P |
O4 |
O3 |
239.2 |
240.1 |
O4 |
P |
O2 |
HO2 |
198.8 |
180.0 |
O2 |
P |
O4 |
O3 |
115.8 |
120.0 |
HN1 |
N |
CB |
HB1 |
214.0 |
300.0 |
HN1 |
N |
CB |
HB2 |
328.7 |
59.9 |
CB |
N |
HN1 |
HN2 |
240.0 |
113.8 |
HN2 |
N |
CB |
HB1 |
94.0 |
53.8 |
HN2 |
N |
CB |
HB2 |
208.7 |
173.8 |
CB |
N |
HN2 |
HN1 |
120.0 |
246.2 |