PDB Chemical Component OPE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OPE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA CB 1.080 1.529
CA O4 1.482 1.428
CA HA1 1.100 1.090
CA HA2 1.100 1.090
CB N 1.708 1.468
CB HB1 1.100 1.090
CB HB2 1.100 1.090
O1 P 1.454 1.609
O1 HO1 0.950 0.967
O2 P 1.478 1.609
O2 HO2 0.950 0.968
O3 P 1.676 1.480
O4 P 1.655 1.608
N HN1 1.000 1.010
N HN2 1.000 1.008

Bond Angles for OPE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CB CA O4 132.5 109.5
CB CA HA1 97.1 109.5
CB CA HA2 102.4 109.5
CA CB N 91.6 109.5
CA CB HB1 119.3 109.5
CA CB HB2 115.9 109.5
O4 CA HA1 97.1 109.5
O4 CA HA2 102.4 109.4
CA O4 P 132.1 106.9
HA1 CA HA2 129.9 109.5
N CB HB1 119.3 109.4
N CB HB2 115.9 109.5
CB N HN1 109.5 106.7
CB N HN2 109.5 106.7
HB1 CB HB2 96.6 109.4
P O1 HO1 109.5 106.8
O1 P O2 115.9 109.5
O1 P O3 110.9 109.4
O1 P O4 112.5 109.5
P O2 HO2 109.5 106.8
O2 P O3 111.8 109.4
O2 P O4 99.6 109.5
O3 P O4 105.2 109.5
HN1 N HN2 109.4 106.7

Torsion Angles for OPE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O4 CA CB HA1 106.4 120.0
O4 CA CB HA2 240.0 240.0
CB CA O4 P 126.4 180.0
HA1 CA CB HA2 133.6 120.0
N CB CA HB1 125.2 120.0
N CB CA HB2 240.0 240.0
CA CB N HN1 88.7 180.0
CA CB N HN2 328.7 293.8
HB1 CB CA HB2 114.8 120.0
CB CA O4 HA1 253.6 240.0
CB CA O4 HA2 120.0 120.1
O4 CA CB N 295.5 60.0
O4 CA CB HB1 170.3 300.0
O4 CA CB HB2 55.5 180.1
HA1 CA O4 HA2 226.5 240.1
O1 P O4 CA 321.3 300.0
O2 P O4 CA 198.0 180.0
O3 P O4 CA 82.1 60.0
CB CA HA1 O4 134.5 120.0
CB CA HA1 HA2 247.2 239.9
HA1 CA CB N 189.1 300.0
HA1 CA CB HB1 63.9 180.0
HA1 CA CB HB2 309.1 60.0
O4 CA HA1 HA2 112.7 119.9
HA1 CA O4 P 232.8 300.0
CB CA HA2 O4 220.8 240.0
CB CA HA2 HA1 110.4 120.0
HA2 CA CB N 55.5 180.0
HA2 CA CB HB1 290.3 60.0
HA2 CA CB HB2 175.5 300.0
O4 CA HA2 HA1 249.6 240.0
HA2 CA O4 P 6.4 60.0
N CB CA O4 295.5 60.0
N CB CA HA1 189.1 300.0
N CB CA HA2 55.5 180.0
CA CB N HB1 234.7 240.0
CA CB N HB2 120.0 120.0
HB1 CB N HB2 245.3 240.0
HN1 N CB HN2 120.0 246.2
HB1 CB CA O4 170.3 300.0
HB1 CB CA HA1 63.9 180.0
HB1 CB CA HA2 290.3 60.0
CA CB HB1 N 110.6 120.0
CA CB HB1 HB2 235.3 240.0
N CB HB1 HB2 124.7 120.0
HB1 CB N HN1 214.0 300.0
HB1 CB N HN2 94.0 53.8
HB2 CB CA O4 55.5 180.1
HB2 CB CA HA1 309.1 60.0
HB2 CB CA HA2 175.5 300.0
CA CB HB2 N 254.3 239.9
CA CB HB2 HB1 127.2 120.0
N CB HB2 HB1 232.9 240.0
HB2 CB N HN1 328.7 59.9
HB2 CB N HN2 208.7 173.8
CA O4 P O1 321.3 300.0
O1 P O2 HO2 77.9 59.9
O2 P O1 O3 231.2 240.1
O2 P O1 O4 113.7 120.1
O3 P O1 O4 242.5 240.0
HO1 O1 P O2 103.0 60.0
HO1 O1 P O3 231.8 180.0
HO1 O1 P O4 349.3 300.0
CA O4 P O2 198.0 180.0
O2 P O1 HO1 103.0 60.0
O1 P O2 O3 128.3 119.9
O1 P O2 O4 239.1 240.0
O3 P O2 O4 110.7 120.0
HO2 O2 P O3 309.6 300.0
HO2 O2 P O4 198.8 180.0
CA O4 P O3 82.1 60.0
O3 P O1 HO1 231.8 180.0
O1 P O3 O2 229.0 240.0
O1 P O3 O4 121.9 120.0
O3 P O2 HO2 309.6 300.0
O2 P O3 O4 252.9 239.9
P O4 CA HA1 232.8 300.0
P O4 CA HA2 6.4 60.0
O4 P O1 HO1 349.3 300.0
O1 P O4 O2 123.4 120.1
O1 P O4 O3 239.2 240.1
O4 P O2 HO2 198.8 180.0
O2 P O4 O3 115.8 120.0
HN1 N CB HB1 214.0 300.0
HN1 N CB HB2 328.7 59.9
CB N HN1 HN2 240.0 113.8
HN2 N CB HB1 94.0 53.8
HN2 N CB HB2 208.7 173.8
CB N HN2 HN1 120.0 246.2