PDB Chemical Component OLO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OLO

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	C	1.381	1.364
N	C7A	1.392	1.371
N	C3	1.482	1.465
C	N1	1.386	1.301
C	H	1.104	1.080
N1	C3A	1.382	1.356
C3A	C7A	1.442	1.405
C3A	C1	1.436	1.405
C7A	N3	1.430	1.330
C1	N2	1.415	1.327
C1	N5	1.460	1.383
N2	C2	1.415	1.326
C2	N3	1.411	1.323
C2	N4	1.451	1.385
C3	H31	1.115	1.090
C3	H32	1.115	1.089
C3	H33	1.116	1.089
N4	C4	1.474	1.465
N4	HN4	1.020	0.969
C4	C5	1.533	1.530
C4	H41	1.115	1.089
C4	H42	1.115	1.090
C5	O	1.422	1.429
C5	H51	1.116	1.091
C5	H52	1.114	1.090
O	HO	0.949	0.967
N5	C6	1.487	1.465
N5	HN5	1.020	0.969
C6	C12	1.525	1.507
C6	H61	1.114	1.090
C6	H62	1.115	1.089
C7	C8	1.413	1.383
C7	C12	1.437	1.383
C7	H7	1.103	1.080
C8	C9	1.420	1.381
C8	H8	1.103	1.080
C9	C10	1.423	1.383
C9	H9	1.103	1.080
C10	C11	1.421	1.383
C10	H10	1.103	1.080
C11	C12	1.421	1.381
C11	H11	1.103	1.080

Bond Angles for OLO

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C	N	C7A	98.0	107.5
C	N	C3	130.1	126.2
N	C	N1	122.1	109.9
N	C	H	118.8	125.1
C7A	N	C3	131.8	126.3
N	C7A	C3A	110.8	106.0
N	C7A	N3	129.2	134.8
N	C3	H31	130.2	109.4
N	C3	H32	105.1	109.5
N	C3	H33	105.1	109.5
N1	C	H	119.1	125.0
C	N1	C3A	98.5	109.5
N1	C3A	C7A	110.6	107.1
N1	C3A	C1	129.4	134.6
C7A	C3A	C1	120.1	118.3
C3A	C7A	N3	120.0	119.1
C3A	C1	N2	117.8	118.5
C3A	C1	N5	119.0	120.7
C7A	N3	C2	119.7	120.5
N2	C1	N5	123.1	120.8
C1	N2	C2	122.7	121.2
C1	N5	C6	132.7	120.0
C1	N5	HN5	104.2	120.0
N2	C2	N3	119.6	122.3
N2	C2	N4	120.0	118.9
N3	C2	N4	120.4	118.8
C2	N4	C4	128.6	120.0
C2	N4	HN4	105.5	120.0
H31	C3	H32	105.0	109.4
H31	C3	H33	105.0	109.4
H32	C3	H33	104.1	109.6
C4	N4	HN4	105.6	120.0
N4	C4	C5	112.7	109.5
N4	C4	H41	111.0	109.5
N4	C4	H42	111.0	109.5
C5	C4	H41	111.1	109.5
C5	C4	H42	111.1	109.5
C4	C5	O	111.1	109.5
C4	C5	H51	111.6	109.5
C4	C5	H52	111.6	109.5
H41	C4	H42	99.4	109.4
O	C5	H51	111.6	109.5
O	C5	H52	111.7	109.4
C5	O	HO	111.0	106.8
H51	C5	H52	98.7	109.5
C6	N5	HN5	104.2	120.0
N5	C6	C12	118.6	109.4
N5	C6	H61	108.9	109.5
N5	C6	H62	108.9	109.5
C12	C6	H61	108.9	109.5
C12	C6	H62	109.0	109.5
C6	C12	C7	118.7	120.0
C6	C12	C11	121.8	120.0
H61	C6	H62	101.2	109.5
C8	C7	C12	120.4	120.0
C8	C7	H7	118.9	120.0
C7	C8	C9	119.8	120.0
C7	C8	H8	119.8	120.0
C12	C7	H7	120.6	120.0
C7	C12	C11	119.5	120.0
C9	C8	H8	120.4	120.0
C8	C9	C10	120.1	120.0
C8	C9	H9	119.8	120.0
C10	C9	H9	120.0	120.0
C9	C10	C11	120.3	120.0
C9	C10	H10	119.9	120.0
C11	C10	H10	119.8	120.0
C10	C11	C12	119.9	120.0
C10	C11	H11	120.1	120.0
C12	C11	H11	120.1	120.0

Torsion Angles for OLO

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C7A	N	C	C3	180.1	180.2
C	N	C7A	C3A	0.0	359.7
C	N	C7A	N3	179.9	180.5
C	N	C3	H31	180.0	90.0
C	N	C3	H32	305.3	210.0
C	N	C3	H33	54.7	330.1
N1	C	N	H	180.0	179.9
N	C	N1	C3A	360.0	0.1
C	N	C7A	C3	179.9	179.8
C7A	N	C	N1	360.0	0.2
C7A	N	C	H	180.0	180.2
C7A	N	C3	H31	359.8	269.8
C7A	N	C3	H32	125.1	29.7
C7A	N	C3	H33	234.6	149.8
N1	C3A	C7A	N	359.9	0.3
N	C7A	C3A	C1	179.6	180.2
C3A	C7A	N	N3	180.1	179.2
N	C7A	N3	C2	180.4	179.6
C	N	C3	C7A	180.2	180.3
C3	N	C	N1	179.9	179.9
C3	N	C	H	359.9	360.0
C3	N	C7A	C3A	180.2	179.9
C3	N	C7A	N3	0.1	0.7
H31	C3	N	H32	234.7	240.1
H31	C3	N	H33	125.3	119.9
H32	C3	N	H33	250.5	239.9
N1	C	N	C7A	360.0	0.2
N1	C	N	C3	179.9	179.9
N	C	N1	H	180.0	180.1
C	N1	C3A	C7A	0.1	359.7
C	N1	C3A	C1	180.5	179.9
H	C	N	C7A	180.0	180.2
H	C	N	C3	359.9	360.0
N	C	H	N1	180.0	179.9
H	C	N1	C3A	180.0	180.0
N	C7A	C3A	N1	359.9	0.3
C3A	N1	C	H	180.0	180.0
C7A	C3A	N1	C1	179.6	179.8
N1	C3A	C7A	N3	180.0	179.7
N1	C3A	C1	N2	179.6	179.9
N1	C3A	C1	N5	359.9	0.0
C3A	C7A	N	C3	180.2	179.9
N	C7A	C3A	N3	179.9	180.6
N1	C3A	C7A	C1	180.4	180.2
C7A	C3A	C1	N2	0.1	0.2
C7A	C3A	C1	N5	180.3	180.2
C3A	C7A	N3	C2	0.2	0.5
N1	C3A	C1	C7A	179.6	179.8
C1	C3A	C7A	N3	359.7	359.6
N2	C1	C3A	N5	179.8	179.9
C3A	C1	N2	C2	0.3	0.1
C3A	C1	N5	C6	177.0	180.0
C3A	C1	N5	HN5	51.7	0.0
N3	C7A	N	C3	0.1	0.7
N	C7A	N3	C3A	180.1	179.1
N3	C7A	C3A	C1	359.7	359.6
N2	C2	N3	C7A	0.1	359.8
C7A	N3	C2	N4	180.1	179.7
C3A	C1	N2	N5	180.3	180.1
N2	C1	N5	C6	357.2	0.0
N2	C1	N5	HN5	232.0	180.1
C1	N2	C2	N3	359.6	359.9
C1	N2	C2	N4	179.7	180.0
C3A	C1	N5	N2	179.7	179.9
N5	C1	N2	C2	180.1	180.0
C6	N5	C1	HN5	125.3	179.9
C1	N5	C6	C12	355.4	180.0
C1	N5	C6	H61	120.7	300.0
C1	N5	C6	H62	230.1	60.0
C7A	N3	C2	N2	0.1	359.8
C2	N2	C1	N5	180.1	180.0
N3	C2	N2	N4	179.9	179.9
N2	C2	N4	C4	335.8	359.9
N2	C2	N4	HN4	210.6	180.0
N2	C2	N3	N4	180.1	180.1
N3	C2	N4	C4	155.9	180.0
N3	C2	N4	HN4	30.6	0.1
N2	C2	N4	N3	179.9	179.9
C4	N4	C2	HN4	125.3	179.9
C2	N4	C4	C5	146.2	180.0
C2	N4	C4	H41	271.4	300.1
C2	N4	C4	H42	20.9	60.0
N	C3	H31	H32	125.3	120.0
N	C3	H31	H33	234.7	240.0
H32	C3	H31	H33	109.4	120.0
N	C3	H32	H31	220.2	240.0
N	C3	H32	H33	110.2	120.1
H31	C3	H32	H33	249.9	240.1
N	C3	H33	H31	139.8	119.9
N	C3	H33	H32	249.8	239.9
H31	C3	H33	H32	110.1	120.0
C2	N4	C4	HN4	234.8	180.1
C5	C4	N4	H41	234.7	239.9
C5	C4	N4	H42	125.3	120.0
N4	C4	C5	O	274.3	60.0
N4	C4	C5	H51	39.6	180.0
N4	C4	C5	H52	149.0	300.0
H41	C4	N4	H42	250.5	240.1
C2	N4	HN4	C4	138.5	179.9
HN4	N4	C4	C5	271.4	360.0
HN4	N4	C4	H41	36.7	120.0
HN4	N4	C4	H42	146.1	240.0
C5	C4	N4	HN4	271.4	360.0
N4	C4	C5	H41	125.2	120.1
N4	C4	C5	H42	234.8	240.0
H41	C4	C5	H42	109.6	119.9
O	C5	C4	H51	234.7	240.0
O	C5	C4	H52	125.3	119.9
C4	C5	O	HO	179.9	180.0
H51	C5	C4	H52	250.6	240.0
H41	C4	N4	HN4	36.7	120.0
N4	C4	H41	C5	233.8	239.9
N4	C4	H41	H42	116.9	120.0
C5	C4	H41	H42	243.0	240.0
H41	C4	C5	O	149.1	299.9
H41	C4	C5	H51	274.3	59.9
H41	C4	C5	H52	23.8	180.0
H42	C4	N4	HN4	146.1	240.0
N4	C4	H42	C5	126.2	120.0
N4	C4	H42	H41	243.1	240.0
C5	C4	H42	H41	117.0	120.0
H42	C4	C5	O	39.5	180.0
H42	C4	C5	H51	164.8	300.0
H42	C4	C5	H52	274.2	60.1
O	C5	C4	H41	149.1	299.9
O	C5	C4	H42	39.5	180.0
C4	C5	O	H51	125.2	120.0
C4	C5	O	H52	234.7	240.0
H51	C5	O	H52	109.5	120.0
H51	C5	C4	H41	274.3	59.9
H51	C5	C4	H42	164.8	300.0
C4	C5	H51	O	235.0	240.0
C4	C5	H51	H52	117.5	120.0
O	C5	H51	H52	242.4	240.1
H51	C5	O	HO	54.7	60.0
H52	C5	C4	H41	23.8	180.0
H52	C5	C4	H42	274.2	60.1
C4	C5	H52	O	125.0	120.0
C4	C5	H52	H51	242.5	240.0
O	C5	H52	H51	117.6	120.0
H52	C5	O	HO	305.2	300.0
HO	O	C5	H51	54.7	60.0
HO	O	C5	H52	305.2	300.0
C1	N5	C6	HN5	234.7	180.1
C12	C6	N5	H61	234.8	240.0
C12	C6	N5	H62	125.3	120.0
N5	C6	C12	C7	282.4	90.0
N5	C6	C12	C11	102.9	269.7
H61	C6	N5	H62	250.5	240.0
C1	N5	HN5	C6	141.8	179.9
HN5	N5	C6	C12	120.7	359.9
HN5	N5	C6	H61	245.9	119.9
HN5	N5	C6	H62	355.4	239.9
C12	C6	N5	HN5	120.7	359.9
N5	C6	C12	H61	125.2	120.0
N5	C6	C12	H62	234.7	240.0
H61	C6	C12	H62	109.5	120.1
C8	C7	C12	C6	180.4	179.9
C6	C12	C7	H7	0.4	360.0
C7	C12	C6	C11	179.5	180.3
C10	C11	C12	C6	179.6	179.8
C6	C12	C11	H11	359.5	0.3
H61	C6	N5	HN5	245.9	119.9
N5	C6	H61	C12	229.3	240.1
N5	C6	H61	H62	114.6	120.0
C12	C6	H61	H62	245.3	240.0
H61	C6	C12	C7	157.2	330.1
H61	C6	C12	C11	337.7	149.8
H62	C6	N5	HN5	355.4	239.9
N5	C6	H62	C12	130.7	120.0
N5	C6	H62	H61	245.4	240.0
C12	C6	H62	H61	114.7	120.0
H62	C6	C12	C7	47.6	210.0
H62	C6	C12	C11	228.2	29.7
C6	C12	C7	C8	180.4	179.9
C12	C7	C8	H7	180.0	180.1
C8	C7	C12	C11	359.9	0.2
C9	C8	C7	H8	180.0	180.1
C7	C8	C9	C10	360.0	359.9
C7	C8	C9	H9	180.0	179.9
C7	C12	C6	H61	157.2	330.1
C7	C12	C6	H62	47.6	210.0
C6	C12	C7	C11	180.5	179.7
C8	C7	C12	H7	180.0	179.9
C12	C7	C8	C9	0.1	0.0
C12	C7	C8	H8	180.1	179.9
C10	C11	C12	C7	0.1	359.5
C7	C12	C11	H11	180.1	180.0
C8	C7	H7	C12	180.0	180.1
H7	C7	C8	C9	180.1	180.0
H7	C7	C8	H8	0.1	359.9
H7	C7	C12	C11	179.9	180.3
C9	C8	C7	C12	0.1	0.0
C9	C8	C7	H7	180.1	180.0
C7	C8	C9	H8	180.0	179.9
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	C11	0.0	359.9
C8	C9	C10	H10	180.1	180.0
H8	C8	C7	C12	180.1	179.9
H8	C8	C7	H7	0.1	359.9
C7	C8	H8	C9	180.0	180.1
H8	C8	C9	C10	180.0	180.0
H8	C8	C9	H9	360.0	0.1
C10	C9	C8	H8	180.0	180.0
C8	C9	C10	H9	180.0	180.0
C11	C10	C9	H10	180.0	179.9
C9	C10	C11	C12	360.0	0.4
C9	C10	C11	H11	180.0	180.0
H9	C9	C8	H8	360.0	0.1
C8	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	180.0	179.8
H9	C9	C10	H10	0.0	360.0
C6	C12	C11	C10	179.6	179.8
C7	C12	C11	C10	0.1	359.5
C11	C10	C9	H9	180.0	179.8
C9	C10	C11	H10	180.0	180.1
C12	C11	C10	H11	180.0	180.5
H10	C10	C9	H9	0.0	360.0
C9	C10	H10	C11	180.0	179.9
H10	C10	C11	C12	179.9	180.3
H10	C10	C11	H11	359.9	359.8
C11	C12	C6	H61	337.7	149.8
C11	C12	C6	H62	228.2	29.7
C6	C12	C11	C7	179.5	180.3
C11	C12	C7	H7	179.9	180.3
C12	C11	C10	H10	179.9	180.3
C10	C11	C12	H11	180.0	179.5
H11	C11	C10	H10	359.9	359.8
C10	C11	H11	C12	180.0	180.5