PDB Chemical Component NTM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NTM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.353 |
1.324 |
N1 |
C6 |
1.313 |
1.316 |
C2 |
C3 |
1.398 |
1.404 |
C2 |
C7 |
1.473 |
1.482 |
C3 |
C4 |
1.408 |
1.398 |
C3 |
C8 |
1.519 |
1.478 |
C4 |
C5 |
1.404 |
1.385 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.394 |
1.386 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
H6 |
1.104 |
1.080 |
C7 |
O1 |
1.231 |
1.214 |
C7 |
O2 |
1.241 |
1.347 |
O2 |
HO2 |
0.951 |
0.967 |
C8 |
O3 |
1.294 |
1.214 |
C8 |
O4 |
1.267 |
1.347 |
O4 |
HO4 |
0.950 |
0.966 |
Bond Angles for NTM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
122.5 |
121.8 |
N1 |
C2 |
C3 |
120.5 |
120.4 |
N1 |
C2 |
C7 |
117.1 |
119.7 |
N1 |
C6 |
C5 |
120.6 |
121.2 |
N1 |
C6 |
H6 |
116.7 |
119.4 |
C3 |
C2 |
C7 |
122.4 |
119.8 |
C2 |
C3 |
C4 |
118.1 |
118.8 |
C2 |
C3 |
C8 |
125.2 |
120.6 |
C2 |
C7 |
O1 |
124.0 |
120.0 |
C2 |
C7 |
O2 |
116.0 |
120.1 |
C4 |
C3 |
C8 |
116.7 |
120.6 |
C3 |
C4 |
C5 |
119.1 |
118.3 |
C3 |
C4 |
H4 |
120.6 |
120.8 |
C3 |
C8 |
O3 |
118.3 |
120.0 |
C3 |
C8 |
O4 |
119.8 |
120.0 |
C5 |
C4 |
H4 |
120.3 |
120.8 |
C4 |
C5 |
C6 |
119.2 |
119.5 |
C4 |
C5 |
H5 |
120.8 |
120.3 |
C6 |
C5 |
H5 |
120.0 |
120.3 |
C5 |
C6 |
H6 |
122.7 |
119.4 |
O1 |
C7 |
O2 |
119.9 |
120.0 |
C7 |
O2 |
HO2 |
116.0 |
120.0 |
O3 |
C8 |
O4 |
121.9 |
120.0 |
C8 |
O4 |
HO4 |
119.7 |
120.0 |
Torsion Angles for NTM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
C5 |
1.5 |
359.7 |
C2 |
N1 |
C6 |
H6 |
181.6 |
179.7 |
C3 |
C2 |
N1 |
C7 |
179.4 |
180.6 |
N1 |
C2 |
C3 |
C4 |
358.2 |
359.4 |
N1 |
C2 |
C3 |
C8 |
177.8 |
179.7 |
N1 |
C2 |
C7 |
O1 |
303.6 |
174.7 |
N1 |
C2 |
C7 |
O2 |
121.5 |
354.8 |
C6 |
N1 |
C2 |
C3 |
0.5 |
0.6 |
C6 |
N1 |
C2 |
C7 |
181.1 |
180.0 |
C4 |
C5 |
C6 |
N1 |
357.8 |
360.0 |
N1 |
C6 |
C5 |
H5 |
177.8 |
180.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.1 |
C3 |
C2 |
N1 |
C6 |
0.5 |
0.6 |
N1 |
C2 |
C3 |
C7 |
180.6 |
179.4 |
C3 |
C2 |
C7 |
O1 |
124.2 |
354.1 |
C3 |
C2 |
C7 |
O2 |
302.1 |
174.2 |
C4 |
C3 |
C2 |
C8 |
180.4 |
179.8 |
C2 |
C3 |
C4 |
C5 |
1.1 |
0.2 |
C2 |
C3 |
C4 |
H4 |
181.1 |
180.2 |
C2 |
C3 |
C8 |
O3 |
327.1 |
304.9 |
C2 |
C3 |
C8 |
O4 |
148.7 |
125.0 |
C7 |
C2 |
N1 |
C6 |
181.1 |
180.0 |
N1 |
C2 |
C7 |
C3 |
179.4 |
180.6 |
C7 |
C2 |
C3 |
C4 |
177.6 |
180.0 |
C7 |
C2 |
C3 |
C8 |
357.2 |
0.3 |
O1 |
C7 |
C2 |
O2 |
182.2 |
179.9 |
C2 |
C7 |
O2 |
HO2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
C7 |
177.6 |
180.0 |
C2 |
C3 |
C4 |
C8 |
179.6 |
180.2 |
C4 |
C3 |
C8 |
O3 |
146.7 |
125.1 |
C4 |
C3 |
C8 |
O4 |
328.2 |
305.2 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.9 |
0.1 |
C3 |
C4 |
C5 |
H5 |
180.8 |
180.0 |
C8 |
C3 |
C2 |
C7 |
357.2 |
0.3 |
C2 |
C3 |
C8 |
C4 |
180.4 |
179.8 |
C8 |
C3 |
C4 |
C5 |
181.5 |
180.0 |
C8 |
C3 |
C4 |
H4 |
1.4 |
0.0 |
O3 |
C8 |
C3 |
O4 |
178.5 |
179.9 |
C3 |
C8 |
O4 |
HO4 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
357.8 |
360.0 |
C5 |
C4 |
C3 |
C8 |
181.5 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
H6 |
177.8 |
180.0 |
H4 |
C4 |
C3 |
C8 |
1.4 |
0.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
180.9 |
180.1 |
H4 |
C4 |
C5 |
H5 |
0.8 |
360.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H4 |
180.9 |
180.1 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
H5 |
C5 |
C4 |
H4 |
0.8 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
H6 |
357.8 |
0.1 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
H6 |
C6 |
C5 |
H5 |
357.8 |
0.1 |
C2 |
C7 |
O1 |
O2 |
177.8 |
180.1 |
O1 |
C7 |
O2 |
HO2 |
357.9 |
0.0 |
C2 |
C7 |
O2 |
O1 |
182.1 |
179.9 |
C3 |
C8 |
O3 |
O4 |
181.6 |
180.1 |
O3 |
C8 |
O4 |
HO4 |
1.6 |
0.1 |
C3 |
C8 |
O4 |
O3 |
178.4 |
179.9 |