PDB Chemical Component NPY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NPY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.409 |
1.361 |
| C1 |
C8A |
1.402 |
1.405 |
| C1 |
H11 |
1.103 |
1.079 |
| C2 |
C3 |
1.404 |
1.394 |
| C2 |
H2 |
1.102 |
1.079 |
| C3 |
C4 |
1.390 |
1.361 |
| C3 |
H3 |
1.102 |
1.080 |
| C4 |
C4A |
1.396 |
1.405 |
| C4 |
H4 |
1.102 |
1.080 |
| C4A |
C5 |
1.385 |
1.405 |
| C4A |
C8A |
1.414 |
1.418 |
| C5 |
C6 |
1.393 |
1.361 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
C7 |
1.401 |
1.394 |
| C6 |
H6 |
1.103 |
1.080 |
| C7 |
C8 |
1.398 |
1.361 |
| C7 |
H7 |
1.104 |
1.080 |
| C8 |
C8A |
1.386 |
1.405 |
| C8 |
H8 |
1.104 |
1.079 |
Bond Angles for NPY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C8A |
118.6 |
119.7 |
| C2 |
C1 |
H11 |
121.0 |
120.2 |
| C1 |
C2 |
C3 |
122.1 |
121.0 |
| C1 |
C2 |
H2 |
119.1 |
119.5 |
| C8A |
C1 |
H11 |
120.5 |
120.2 |
| C1 |
C8A |
C4A |
119.7 |
119.4 |
| C1 |
C8A |
C8 |
121.2 |
121.3 |
| C3 |
C2 |
H2 |
118.8 |
119.5 |
| C2 |
C3 |
C4 |
118.3 |
121.0 |
| C2 |
C3 |
H3 |
121.3 |
119.5 |
| C4 |
C3 |
H3 |
120.4 |
119.5 |
| C3 |
C4 |
C4A |
121.1 |
119.7 |
| C3 |
C4 |
H4 |
119.2 |
120.2 |
| C4A |
C4 |
H4 |
119.7 |
120.2 |
| C4 |
C4A |
C5 |
120.8 |
121.3 |
| C4 |
C4A |
C8A |
120.2 |
119.4 |
| C5 |
C4A |
C8A |
118.9 |
119.4 |
| C4A |
C5 |
C6 |
120.9 |
119.7 |
| C4A |
C5 |
H5 |
119.3 |
120.2 |
| C4A |
C8A |
C8 |
119.1 |
119.4 |
| C6 |
C5 |
H5 |
119.8 |
120.2 |
| C5 |
C6 |
C7 |
121.3 |
121.0 |
| C5 |
C6 |
H6 |
119.1 |
119.5 |
| C7 |
C6 |
H6 |
119.6 |
119.5 |
| C6 |
C7 |
C8 |
116.9 |
121.0 |
| C6 |
C7 |
H7 |
121.7 |
119.5 |
| C8 |
C7 |
H7 |
121.4 |
119.5 |
| C7 |
C8 |
C8A |
122.8 |
119.7 |
| C7 |
C8 |
H8 |
119.0 |
120.2 |
| C8A |
C8 |
H8 |
118.2 |
120.2 |
Torsion Angles for NPY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8A |
C1 |
C2 |
H11 |
180.0 |
180.0 |
| C2 |
C1 |
C8A |
C4A |
356.8 |
-0.0 |
| C2 |
C1 |
C8A |
C8 |
177.5 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.8 |
| C1 |
C2 |
C3 |
C4 |
357.6 |
-0.0 |
| C1 |
C2 |
C3 |
H3 |
177.6 |
180.0 |
| C2 |
C1 |
C8A |
H11 |
180.0 |
180.0 |
| C8A |
C1 |
C2 |
C3 |
3.7 |
-0.0 |
| C8A |
C1 |
C2 |
H2 |
183.7 |
180.2 |
| C4 |
C4A |
C8A |
C1 |
1.7 |
-0.0 |
| C5 |
C4A |
C8A |
C1 |
182.9 |
180.0 |
| C4A |
C8A |
C1 |
C8 |
179.3 |
180.0 |
| C7 |
C8 |
C8A |
C1 |
177.2 |
180.0 |
| C1 |
C8A |
C8 |
H8 |
357.2 |
0.1 |
| C2 |
C1 |
H11 |
C8A |
180.0 |
180.0 |
| H11 |
C1 |
C2 |
C3 |
183.7 |
180.0 |
| H11 |
C1 |
C2 |
H2 |
3.7 |
0.2 |
| H11 |
C1 |
C8A |
C4A |
176.7 |
180.0 |
| H11 |
C1 |
C8A |
C8 |
357.4 |
-0.0 |
| C3 |
C2 |
C1 |
C8A |
3.7 |
-0.0 |
| C3 |
C2 |
C1 |
H11 |
183.7 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.2 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C4A |
0.8 |
-0.0 |
| C2 |
C3 |
C4 |
H4 |
180.8 |
179.9 |
| H2 |
C2 |
C1 |
C8A |
183.7 |
180.2 |
| H2 |
C2 |
C1 |
H11 |
3.7 |
0.2 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
179.8 |
| H2 |
C2 |
C3 |
C4 |
177.6 |
179.8 |
| H2 |
C2 |
C3 |
H3 |
357.6 |
359.8 |
| C4 |
C3 |
C2 |
H2 |
177.6 |
179.8 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C4A |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C4 |
C4A |
C5 |
178.3 |
180.0 |
| C3 |
C4 |
C4A |
C8A |
359.6 |
-0.0 |
| H3 |
C3 |
C2 |
H2 |
357.6 |
359.8 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C4A |
180.8 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
0.8 |
359.9 |
| C1 |
C8A |
C4A |
C4 |
1.7 |
-0.0 |
| C4A |
C4 |
C3 |
H3 |
180.8 |
180.0 |
| C3 |
C4 |
C4A |
H4 |
180.0 |
179.9 |
| C5 |
C4A |
C4 |
C8A |
178.7 |
180.0 |
| C4 |
C4A |
C5 |
C6 |
179.3 |
180.0 |
| C4 |
C4A |
C5 |
H5 |
359.3 |
359.9 |
| C4 |
C4A |
C8A |
C8 |
181.0 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
0.8 |
359.9 |
| C3 |
C4 |
H4 |
C4A |
180.0 |
180.1 |
| H4 |
C4 |
C4A |
C5 |
358.3 |
0.1 |
| H4 |
C4 |
C4A |
C8A |
179.6 |
180.1 |
| C1 |
C8A |
C4A |
C5 |
182.9 |
180.0 |
| C5 |
C4A |
C4 |
H4 |
358.3 |
0.1 |
| C4 |
C4A |
C5 |
C8A |
181.3 |
180.0 |
| C5 |
C4A |
C8A |
C8 |
2.3 |
-0.0 |
| C6 |
C5 |
C4A |
H5 |
180.0 |
180.1 |
| C4A |
C5 |
C6 |
C7 |
1.6 |
-0.0 |
| C4A |
C5 |
C6 |
H6 |
181.5 |
180.1 |
| C4A |
C8A |
C1 |
H11 |
176.7 |
180.0 |
| C1 |
C8A |
C4A |
C8 |
180.7 |
180.0 |
| C8A |
C4A |
C4 |
H4 |
179.6 |
180.1 |
| C4 |
C4A |
C8A |
C5 |
178.7 |
180.0 |
| C8A |
C4A |
C5 |
C6 |
358.0 |
-0.0 |
| C8A |
C4A |
C5 |
H5 |
178.0 |
179.9 |
| C7 |
C8 |
C8A |
C4A |
357.9 |
-0.0 |
| C4A |
C8A |
C8 |
H8 |
177.9 |
180.1 |
| C6 |
C5 |
C4A |
C8A |
358.0 |
-0.0 |
| C4A |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
C8 |
358.7 |
-0.0 |
| C5 |
C6 |
C7 |
H7 |
178.7 |
180.0 |
| H5 |
C5 |
C4A |
C8A |
178.0 |
179.9 |
| C4A |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
C7 |
181.6 |
180.1 |
| H5 |
C5 |
C6 |
H6 |
1.5 |
0.1 |
| C7 |
C6 |
C5 |
H5 |
181.6 |
180.1 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C8A |
1.6 |
-0.0 |
| C6 |
C7 |
C8 |
H8 |
181.6 |
179.9 |
| H6 |
C6 |
C5 |
H5 |
1.5 |
0.1 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.9 |
| H6 |
C6 |
C7 |
C8 |
178.7 |
179.9 |
| H6 |
C6 |
C7 |
H7 |
358.7 |
359.9 |
| C1 |
C8A |
C8 |
C7 |
177.2 |
180.0 |
| C4A |
C8A |
C8 |
C7 |
357.9 |
-0.0 |
| C8 |
C7 |
C6 |
H6 |
178.7 |
179.9 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C8A |
C8 |
C7 |
H8 |
180.0 |
180.1 |
| H7 |
C7 |
C6 |
H6 |
358.7 |
359.9 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C8A |
181.6 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
1.6 |
359.9 |
| C8 |
C8A |
C1 |
H11 |
357.4 |
360.0 |
| C1 |
C8A |
C8 |
C4A |
179.3 |
180.0 |
| C8A |
C8 |
C7 |
H7 |
181.6 |
180.0 |
| C7 |
C8 |
C8A |
H8 |
180.0 |
179.9 |
| H8 |
C8 |
C7 |
H7 |
1.6 |
359.9 |
| C7 |
C8 |
H8 |
C8A |
180.0 |
180.1 |