PDB Chemical Component NPO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NPO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.365 |
1.408 |
C1 |
C6 |
1.402 |
1.407 |
C1 |
N1 |
1.456 |
1.340 |
C2 |
C3 |
1.379 |
1.363 |
C2 |
H2 |
1.102 |
1.080 |
C3 |
C4 |
1.387 |
1.393 |
C3 |
H3 |
1.103 |
1.080 |
C4 |
C5 |
1.381 |
1.393 |
C4 |
OH |
1.368 |
1.355 |
C5 |
C6 |
1.381 |
1.364 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
H6 |
1.104 |
1.079 |
OH |
HO |
0.950 |
0.966 |
N1 |
O2 |
1.241 |
1.217 |
N1 |
O3 |
1.226 |
1.219 |
Bond Angles for NPO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.7 |
119.7 |
C2 |
C1 |
N1 |
119.6 |
120.1 |
C1 |
C2 |
C3 |
118.8 |
119.8 |
C1 |
C2 |
H2 |
120.1 |
120.1 |
C6 |
C1 |
N1 |
119.6 |
120.2 |
C1 |
C6 |
C5 |
120.6 |
119.8 |
C1 |
C6 |
H6 |
120.4 |
120.1 |
C1 |
N1 |
O2 |
121.6 |
120.0 |
C1 |
N1 |
O3 |
118.1 |
120.0 |
C3 |
C2 |
H2 |
121.1 |
120.1 |
C2 |
C3 |
C4 |
120.9 |
120.2 |
C2 |
C3 |
H3 |
119.3 |
119.9 |
C4 |
C3 |
H3 |
119.9 |
119.9 |
C3 |
C4 |
C5 |
120.8 |
120.3 |
C3 |
C4 |
OH |
118.9 |
119.8 |
C5 |
C4 |
OH |
120.3 |
119.9 |
C4 |
C5 |
C6 |
118.2 |
120.2 |
C4 |
C5 |
H5 |
120.9 |
119.9 |
C4 |
OH |
HO |
118.9 |
106.8 |
C6 |
C5 |
H5 |
120.9 |
119.9 |
C5 |
C6 |
H6 |
119.0 |
120.1 |
O2 |
N1 |
O3 |
120.2 |
120.0 |
Torsion Angles for NPO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
N1 |
182.5 |
180.0 |
C2 |
C1 |
C6 |
C5 |
0.4 |
359.7 |
C2 |
C1 |
C6 |
H6 |
180.4 |
180.0 |
C2 |
C1 |
N1 |
O2 |
355.9 |
180.0 |
C2 |
C1 |
N1 |
O3 |
176.5 |
359.9 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C1 |
C2 |
C3 |
C4 |
0.1 |
0.0 |
C1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
N1 |
177.5 |
180.0 |
C6 |
C1 |
C2 |
C3 |
359.6 |
360.0 |
C6 |
C1 |
C2 |
H2 |
179.5 |
180.0 |
C6 |
C1 |
N1 |
O2 |
173.4 |
0.0 |
C6 |
C1 |
N1 |
O3 |
354.0 |
180.0 |
C4 |
C5 |
C6 |
C1 |
359.9 |
0.5 |
C1 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.8 |
C2 |
C1 |
N1 |
C6 |
182.5 |
180.0 |
N1 |
C1 |
C2 |
C3 |
177.1 |
180.0 |
N1 |
C1 |
C2 |
H2 |
357.0 |
0.1 |
N1 |
C1 |
C6 |
C5 |
182.9 |
179.7 |
N1 |
C1 |
C6 |
H6 |
2.9 |
360.0 |
O2 |
N1 |
C1 |
O3 |
179.4 |
180.0 |
C3 |
C2 |
C1 |
C6 |
359.6 |
360.0 |
C3 |
C2 |
C1 |
N1 |
177.1 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.3 |
0.2 |
C2 |
C3 |
C4 |
OH |
180.8 |
179.9 |
H2 |
C2 |
C1 |
C6 |
179.5 |
180.0 |
H2 |
C2 |
C1 |
N1 |
357.0 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
H2 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
H2 |
C2 |
C3 |
H3 |
0.1 |
359.9 |
C4 |
C3 |
C2 |
H2 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
OH |
179.5 |
180.3 |
C3 |
C4 |
C5 |
C6 |
359.7 |
359.5 |
C3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
C3 |
C4 |
OH |
HO |
180.1 |
90.0 |
H3 |
C3 |
C2 |
H2 |
0.1 |
359.9 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
180.3 |
180.3 |
H3 |
C3 |
C4 |
OH |
0.8 |
360.0 |
C1 |
C6 |
C5 |
C4 |
359.9 |
0.5 |
C5 |
C4 |
C3 |
H3 |
180.3 |
180.3 |
C3 |
C4 |
C5 |
OH |
180.5 |
179.7 |
C5 |
C4 |
OH |
HO |
0.6 |
269.8 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.4 |
C4 |
C5 |
C6 |
H6 |
179.9 |
180.3 |
OH |
C4 |
C3 |
H3 |
0.8 |
360.0 |
C3 |
C4 |
OH |
C5 |
179.5 |
180.3 |
OH |
C4 |
C5 |
C6 |
179.2 |
179.8 |
OH |
C4 |
C5 |
H5 |
359.2 |
0.3 |
C5 |
C6 |
C1 |
N1 |
182.9 |
179.7 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
C6 |
C5 |
C4 |
OH |
179.2 |
179.8 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.6 |
H5 |
C5 |
C4 |
OH |
359.2 |
0.3 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.4 |
H5 |
C5 |
C6 |
H6 |
359.9 |
359.7 |
H6 |
C6 |
C1 |
N1 |
2.9 |
360.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
H6 |
C6 |
C5 |
H5 |
359.9 |
359.7 |
C1 |
N1 |
O2 |
O3 |
180.7 |
180.0 |
C1 |
N1 |
O3 |
O2 |
179.4 |
180.0 |