PDB Chemical Component NPO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NPO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.365 1.408
C1 C6 1.402 1.407
C1 N1 1.456 1.340
C2 C3 1.379 1.363
C2 H2 1.102 1.080
C3 C4 1.387 1.393
C3 H3 1.103 1.080
C4 C5 1.381 1.393
C4 OH 1.368 1.355
C5 C6 1.381 1.364
C5 H5 1.103 1.080
C6 H6 1.104 1.079
OH HO 0.950 0.966
N1 O2 1.241 1.217
N1 O3 1.226 1.219

Bond Angles for NPO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 120.7 119.7
C2 C1 N1 119.6 120.1
C1 C2 C3 118.8 119.8
C1 C2 H2 120.1 120.1
C6 C1 N1 119.6 120.2
C1 C6 C5 120.6 119.8
C1 C6 H6 120.4 120.1
C1 N1 O2 121.6 120.0
C1 N1 O3 118.1 120.0
C3 C2 H2 121.1 120.1
C2 C3 C4 120.9 120.2
C2 C3 H3 119.3 119.9
C4 C3 H3 119.9 119.9
C3 C4 C5 120.8 120.3
C3 C4 OH 118.9 119.8
C5 C4 OH 120.3 119.9
C4 C5 C6 118.2 120.2
C4 C5 H5 120.9 119.9
C4 OH HO 118.9 106.8
C6 C5 H5 120.9 119.9
C5 C6 H6 119.0 120.1
O2 N1 O3 120.2 120.0

Torsion Angles for NPO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 N1 182.5 180.0
C2 C1 C6 C5 0.4 359.7
C2 C1 C6 H6 180.4 180.0
C2 C1 N1 O2 355.9 180.0
C2 C1 N1 O3 176.5 359.9
C3 C2 C1 H2 180.0 179.9
C1 C2 C3 C4 0.1 0.0
C1 C2 C3 H3 180.0 180.0
C2 C1 C6 N1 177.5 180.0
C6 C1 C2 C3 359.6 360.0
C6 C1 C2 H2 179.5 180.0
C6 C1 N1 O2 173.4 0.0
C6 C1 N1 O3 354.0 180.0
C4 C5 C6 C1 359.9 0.5
C1 C6 C5 H5 180.0 180.0
C5 C6 C1 H6 180.0 179.8
C2 C1 N1 C6 182.5 180.0
N1 C1 C2 C3 177.1 180.0
N1 C1 C2 H2 357.0 0.1
N1 C1 C6 C5 182.9 179.7
N1 C1 C6 H6 2.9 360.0
O2 N1 C1 O3 179.4 180.0
C3 C2 C1 C6 359.6 360.0
C3 C2 C1 N1 177.1 180.0
C1 C2 C3 H2 180.0 180.1
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 0.3 0.2
C2 C3 C4 OH 180.8 179.9
H2 C2 C1 C6 179.5 180.0
H2 C2 C1 N1 357.0 0.1
C1 C2 H2 C3 180.0 179.9
H2 C2 C3 C4 180.1 180.0
H2 C2 C3 H3 0.1 359.9
C4 C3 C2 H2 180.1 180.0
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 OH 179.5 180.3
C3 C4 C5 C6 359.7 359.5
C3 C4 C5 H5 179.7 180.0
C3 C4 OH HO 180.1 90.0
H3 C3 C2 H2 0.1 359.9
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 180.3 180.3
H3 C3 C4 OH 0.8 360.0
C1 C6 C5 C4 359.9 0.5
C5 C4 C3 H3 180.3 180.3
C3 C4 C5 OH 180.5 179.7
C5 C4 OH HO 0.6 269.8
C6 C5 C4 H5 180.0 179.4
C4 C5 C6 H6 179.9 180.3
OH C4 C3 H3 0.8 360.0
C3 C4 OH C5 179.5 180.3
OH C4 C5 C6 179.2 179.8
OH C4 C5 H5 359.2 0.3
C5 C6 C1 N1 182.9 179.7
C1 C6 C5 H6 180.0 180.2
C6 C5 C4 OH 179.2 179.8
C4 C5 C6 H5 180.0 180.6
H5 C5 C4 OH 359.2 0.3
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 359.9 359.7
H6 C6 C1 N1 2.9 360.0
C1 C6 H6 C5 180.0 179.8
H6 C6 C5 H5 359.9 359.7
C1 N1 O2 O3 180.7 180.0
C1 N1 O3 O2 179.4 180.0