PDB Chemical Component NCT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NCT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.333 |
1.319 |
N1 |
C5 |
1.337 |
1.319 |
C1 |
C2 |
1.378 |
1.381 |
C1 |
HC1 |
1.104 |
1.080 |
C2 |
C3 |
1.391 |
1.387 |
C2 |
C6 |
1.508 |
1.506 |
C3 |
C4 |
1.383 |
1.386 |
C3 |
HC3 |
1.102 |
1.080 |
C4 |
C5 |
1.384 |
1.381 |
C4 |
HC4 |
1.103 |
1.080 |
C5 |
HC5 |
1.104 |
1.080 |
N2 |
C6 |
1.453 |
1.485 |
N2 |
C9 |
1.454 |
1.479 |
N2 |
C10 |
1.448 |
1.468 |
C6 |
C7 |
1.541 |
1.548 |
C6 |
HC6 |
1.115 |
1.090 |
C7 |
C8 |
1.535 |
1.545 |
C7 |
HC71 |
1.116 |
1.090 |
C7 |
HC72 |
1.115 |
1.089 |
C8 |
C9 |
1.550 |
1.539 |
C8 |
HC81 |
1.115 |
1.090 |
C8 |
HC82 |
1.114 |
1.090 |
C9 |
HC91 |
1.115 |
1.089 |
C9 |
HC92 |
1.114 |
1.090 |
C10 |
H101 |
1.115 |
1.090 |
C10 |
H102 |
1.115 |
1.091 |
C10 |
H103 |
1.115 |
1.090 |
Bond Angles for NCT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
C5 |
119.1 |
121.7 |
N1 |
C1 |
C2 |
123.2 |
120.8 |
N1 |
C1 |
HC1 |
116.6 |
119.6 |
N1 |
C5 |
C4 |
122.1 |
120.8 |
N1 |
C5 |
HC5 |
117.1 |
119.6 |
C2 |
C1 |
HC1 |
120.2 |
119.6 |
C1 |
C2 |
C3 |
117.3 |
119.1 |
C1 |
C2 |
C6 |
120.7 |
120.4 |
C3 |
C2 |
C6 |
122.0 |
120.5 |
C2 |
C3 |
C4 |
120.3 |
118.5 |
C2 |
C3 |
HC3 |
120.1 |
120.7 |
C2 |
C6 |
N2 |
114.8 |
110.8 |
C2 |
C6 |
C7 |
111.2 |
110.7 |
C2 |
C6 |
HC6 |
102.6 |
110.6 |
C4 |
C3 |
HC3 |
119.5 |
120.8 |
C3 |
C4 |
C5 |
118.0 |
119.2 |
C3 |
C4 |
HC4 |
121.0 |
120.5 |
C5 |
C4 |
HC4 |
121.0 |
120.4 |
C4 |
C5 |
HC5 |
120.8 |
119.7 |
C6 |
N2 |
C9 |
106.8 |
105.8 |
C6 |
N2 |
C10 |
115.6 |
106.7 |
N2 |
C6 |
C7 |
102.6 |
103.2 |
N2 |
C6 |
HC6 |
111.3 |
110.6 |
C9 |
N2 |
C10 |
114.3 |
106.7 |
N2 |
C9 |
C8 |
105.0 |
107.1 |
N2 |
C9 |
HC91 |
113.9 |
109.9 |
N2 |
C9 |
HC92 |
113.9 |
109.8 |
N2 |
C10 |
H101 |
115.6 |
109.5 |
N2 |
C10 |
H102 |
110.0 |
109.5 |
N2 |
C10 |
H103 |
110.0 |
109.5 |
C7 |
C6 |
HC6 |
114.9 |
110.7 |
C6 |
C7 |
C8 |
104.6 |
102.9 |
C6 |
C7 |
HC71 |
114.1 |
110.7 |
C6 |
C7 |
HC72 |
114.1 |
110.7 |
C8 |
C7 |
HC71 |
114.1 |
110.8 |
C8 |
C7 |
HC72 |
114.1 |
110.8 |
C7 |
C8 |
C9 |
104.6 |
105.1 |
C7 |
C8 |
HC81 |
114.0 |
110.3 |
C7 |
C8 |
HC82 |
114.0 |
110.3 |
HC71 |
C7 |
HC72 |
96.3 |
110.7 |
C9 |
C8 |
HC81 |
114.1 |
110.3 |
C9 |
C8 |
HC82 |
114.1 |
110.4 |
C8 |
C9 |
HC91 |
113.9 |
110.0 |
C8 |
C9 |
HC92 |
113.9 |
110.0 |
HC81 |
C8 |
HC82 |
96.5 |
110.3 |
HC91 |
C9 |
HC92 |
96.6 |
110.0 |
H101 |
C10 |
H102 |
110.0 |
109.4 |
H101 |
C10 |
H103 |
110.0 |
109.4 |
H102 |
C10 |
H103 |
100.2 |
109.5 |
Torsion Angles for NCT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
C5 |
C4 |
359.8 |
359.8 |
C1 |
N1 |
C5 |
HC5 |
179.8 |
179.8 |
C2 |
C1 |
N1 |
HC1 |
180.0 |
180.5 |
N1 |
C1 |
C2 |
C3 |
359.6 |
359.5 |
N1 |
C1 |
C2 |
C6 |
178.3 |
179.7 |
C5 |
N1 |
C1 |
C2 |
0.9 |
0.5 |
C5 |
N1 |
C1 |
HC1 |
180.9 |
180.0 |
C3 |
C4 |
C5 |
N1 |
359.1 |
359.9 |
N1 |
C5 |
C4 |
HC4 |
179.1 |
180.0 |
C4 |
C5 |
N1 |
HC5 |
180.0 |
180.0 |
C2 |
C1 |
N1 |
C5 |
0.9 |
0.5 |
N1 |
C1 |
C2 |
HC1 |
180.0 |
179.5 |
C3 |
C2 |
C1 |
C6 |
181.3 |
179.7 |
C1 |
C2 |
C3 |
C4 |
359.2 |
0.2 |
C1 |
C2 |
C3 |
HC3 |
179.2 |
180.2 |
C1 |
C2 |
C6 |
N2 |
163.7 |
305.8 |
C1 |
C2 |
C6 |
C7 |
279.5 |
59.7 |
C1 |
C2 |
C6 |
HC6 |
42.8 |
182.7 |
HC1 |
C1 |
N1 |
C5 |
180.9 |
180.0 |
N1 |
C1 |
HC1 |
C2 |
180.0 |
180.5 |
HC1 |
C1 |
C2 |
C3 |
179.6 |
180.0 |
HC1 |
C1 |
C2 |
C6 |
358.3 |
0.3 |
C3 |
C2 |
C1 |
HC1 |
179.6 |
180.0 |
C1 |
C2 |
C3 |
C6 |
178.7 |
180.3 |
C3 |
C2 |
C6 |
N2 |
342.3 |
126.1 |
C3 |
C2 |
C6 |
C7 |
98.1 |
240.0 |
C3 |
C2 |
C6 |
HC6 |
221.4 |
3.0 |
C4 |
C3 |
C2 |
HC3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
1.4 |
0.1 |
C2 |
C3 |
C4 |
HC4 |
181.4 |
180.0 |
C6 |
C2 |
C1 |
HC1 |
358.3 |
0.3 |
C1 |
C2 |
C6 |
C3 |
181.4 |
179.7 |
C6 |
C2 |
C3 |
C4 |
180.5 |
180.0 |
C6 |
C2 |
C3 |
HC3 |
0.5 |
360.0 |
C2 |
C6 |
N2 |
C9 |
162.5 |
157.7 |
C2 |
C6 |
N2 |
C10 |
290.9 |
271.1 |
N2 |
C6 |
C2 |
C7 |
244.2 |
246.1 |
N2 |
C6 |
C2 |
HC6 |
120.9 |
123.1 |
C7 |
C6 |
C2 |
HC6 |
236.7 |
237.0 |
C2 |
C6 |
C7 |
C8 |
204.8 |
204.0 |
C2 |
C6 |
C7 |
HC71 |
330.1 |
85.6 |
C2 |
C6 |
C7 |
HC72 |
79.5 |
322.4 |
N1 |
C5 |
C4 |
C3 |
359.1 |
359.9 |
C4 |
C3 |
C2 |
C6 |
180.5 |
180.0 |
C2 |
C3 |
C4 |
HC3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
HC4 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
HC5 |
179.1 |
179.9 |
HC3 |
C3 |
C2 |
C6 |
0.5 |
360.0 |
C2 |
C3 |
HC3 |
C4 |
180.0 |
180.0 |
HC3 |
C3 |
C4 |
C5 |
181.4 |
180.1 |
HC3 |
C3 |
C4 |
HC4 |
1.4 |
360.0 |
N1 |
C5 |
C4 |
HC5 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
HC3 |
181.4 |
180.1 |
C3 |
C4 |
C5 |
HC4 |
180.0 |
179.9 |
HC4 |
C4 |
C3 |
HC3 |
1.4 |
360.0 |
C3 |
C4 |
HC4 |
C5 |
180.0 |
180.1 |
HC4 |
C4 |
C5 |
HC5 |
359.1 |
0.0 |
N1 |
C5 |
HC5 |
C4 |
180.0 |
180.0 |
HC5 |
C5 |
C4 |
HC4 |
359.1 |
0.0 |
C2 |
C6 |
N2 |
C7 |
120.7 |
118.6 |
C2 |
C6 |
N2 |
HC6 |
244.0 |
237.0 |
C9 |
N2 |
C6 |
C10 |
231.6 |
246.6 |
C6 |
N2 |
C9 |
C8 |
325.5 |
334.7 |
C6 |
N2 |
C9 |
HC91 |
90.7 |
94.1 |
C6 |
N2 |
C9 |
HC92 |
200.2 |
215.3 |
C6 |
N2 |
C10 |
H101 |
180.0 |
312.0 |
C6 |
N2 |
C10 |
H102 |
305.3 |
71.9 |
C6 |
N2 |
C10 |
H103 |
54.7 |
191.9 |
C7 |
C6 |
N2 |
HC6 |
123.3 |
118.4 |
N2 |
C6 |
C7 |
C8 |
327.9 |
322.6 |
N2 |
C6 |
C7 |
HC71 |
93.2 |
204.2 |
N2 |
C6 |
C7 |
HC72 |
202.6 |
81.0 |
C6 |
N2 |
C9 |
C10 |
129.1 |
113.4 |
C9 |
N2 |
C6 |
C7 |
41.8 |
39.2 |
C9 |
N2 |
C6 |
HC6 |
278.5 |
280.8 |
C9 |
N2 |
C10 |
H101 |
304.5 |
64.7 |
C9 |
N2 |
C10 |
H102 |
69.9 |
184.7 |
C9 |
N2 |
C10 |
H103 |
179.3 |
304.7 |
C7 |
C8 |
C9 |
N2 |
12.8 |
1.2 |
N2 |
C9 |
C8 |
HC81 |
247.6 |
120.2 |
N2 |
C9 |
C8 |
HC82 |
138.0 |
242.3 |
C8 |
C9 |
N2 |
HC91 |
234.8 |
240.5 |
C8 |
C9 |
N2 |
HC92 |
125.3 |
119.4 |
HC91 |
C9 |
N2 |
HC92 |
250.5 |
238.9 |
C6 |
N2 |
C10 |
C9 |
235.4 |
247.3 |
C10 |
N2 |
C6 |
C7 |
170.2 |
152.6 |
C10 |
N2 |
C6 |
HC6 |
46.8 |
34.1 |
C10 |
N2 |
C9 |
C8 |
196.3 |
221.3 |
C10 |
N2 |
C9 |
HC91 |
321.5 |
340.7 |
C10 |
N2 |
C9 |
HC92 |
71.0 |
101.9 |
H101 |
C10 |
N2 |
H102 |
234.7 |
240.0 |
H101 |
C10 |
N2 |
H103 |
125.2 |
120.0 |
H102 |
C10 |
N2 |
H103 |
250.6 |
240.0 |
C2 |
C6 |
C7 |
N2 |
236.9 |
241.4 |
C2 |
C6 |
C7 |
HC6 |
116.0 |
123.0 |
C7 |
C6 |
N2 |
C9 |
41.8 |
39.2 |
C7 |
C6 |
N2 |
C10 |
170.2 |
152.6 |
N2 |
C6 |
C7 |
HC6 |
239.1 |
241.6 |
C8 |
C7 |
C6 |
HC71 |
234.7 |
118.4 |
C8 |
C7 |
C6 |
HC72 |
125.3 |
241.6 |
C6 |
C7 |
C8 |
C9 |
11.7 |
22.0 |
C6 |
C7 |
C8 |
HC81 |
137.0 |
263.1 |
C6 |
C7 |
C8 |
HC82 |
246.4 |
140.9 |
HC71 |
C7 |
C6 |
HC72 |
250.6 |
123.2 |
C2 |
C6 |
HC6 |
N2 |
123.2 |
123.1 |
C2 |
C6 |
HC6 |
C7 |
239.2 |
237.0 |
HC6 |
C6 |
N2 |
C9 |
278.5 |
280.8 |
HC6 |
C6 |
N2 |
C10 |
46.8 |
34.1 |
N2 |
C6 |
HC6 |
C7 |
116.0 |
113.8 |
HC6 |
C6 |
C7 |
C8 |
88.8 |
81.0 |
HC6 |
C6 |
C7 |
HC71 |
214.1 |
322.6 |
HC6 |
C6 |
C7 |
HC72 |
323.5 |
199.4 |
N2 |
C9 |
C8 |
C7 |
12.8 |
1.2 |
C8 |
C7 |
C6 |
HC6 |
88.8 |
81.0 |
C6 |
C7 |
C8 |
HC71 |
125.3 |
241.7 |
C6 |
C7 |
C8 |
HC72 |
234.7 |
118.4 |
HC71 |
C7 |
C8 |
HC72 |
109.4 |
236.7 |
C9 |
C8 |
C7 |
HC81 |
234.7 |
118.9 |
C9 |
C8 |
C7 |
HC82 |
125.3 |
241.0 |
C7 |
C8 |
C9 |
HC91 |
247.6 |
241.8 |
C7 |
C8 |
C9 |
HC92 |
138.0 |
120.6 |
HC81 |
C8 |
C7 |
HC82 |
250.5 |
122.1 |
HC71 |
C7 |
C6 |
HC6 |
214.1 |
322.6 |
C6 |
C7 |
HC71 |
C8 |
239.9 |
113.5 |
C6 |
C7 |
HC71 |
HC72 |
119.9 |
236.9 |
C8 |
C7 |
HC71 |
HC72 |
240.0 |
123.3 |
HC71 |
C7 |
C8 |
C9 |
246.4 |
140.3 |
HC71 |
C7 |
C8 |
HC81 |
11.7 |
21.4 |
HC71 |
C7 |
C8 |
HC82 |
121.2 |
259.2 |
HC72 |
C7 |
C6 |
HC6 |
323.5 |
199.4 |
C6 |
C7 |
HC72 |
C8 |
120.1 |
246.5 |
C6 |
C7 |
HC72 |
HC71 |
240.1 |
123.1 |
C8 |
C7 |
HC72 |
HC71 |
120.0 |
236.7 |
HC72 |
C7 |
C8 |
C9 |
137.0 |
263.6 |
HC72 |
C7 |
C8 |
HC81 |
262.3 |
144.7 |
HC72 |
C7 |
C8 |
HC82 |
11.7 |
22.5 |
C8 |
C9 |
N2 |
C10 |
196.3 |
221.3 |
N2 |
C9 |
C8 |
HC91 |
125.2 |
119.4 |
N2 |
C9 |
C8 |
HC92 |
234.7 |
240.7 |
C9 |
C8 |
C7 |
HC71 |
246.4 |
140.3 |
C9 |
C8 |
C7 |
HC72 |
137.0 |
263.6 |
C7 |
C8 |
C9 |
HC81 |
125.2 |
241.1 |
C7 |
C8 |
C9 |
HC82 |
234.8 |
118.9 |
HC81 |
C8 |
C9 |
HC82 |
109.5 |
237.9 |
HC91 |
C9 |
C8 |
HC92 |
109.5 |
121.3 |
HC81 |
C8 |
C7 |
HC71 |
11.7 |
21.4 |
HC81 |
C8 |
C7 |
HC72 |
262.3 |
144.7 |
C7 |
C8 |
HC81 |
C9 |
239.9 |
115.7 |
C7 |
C8 |
HC81 |
HC82 |
119.9 |
237.9 |
C9 |
C8 |
HC81 |
HC82 |
240.0 |
122.2 |
HC81 |
C8 |
C9 |
HC91 |
122.3 |
0.8 |
HC81 |
C8 |
C9 |
HC92 |
12.8 |
239.5 |
HC82 |
C8 |
C7 |
HC71 |
121.2 |
259.2 |
HC82 |
C8 |
C7 |
HC72 |
11.7 |
22.5 |
C7 |
C8 |
HC82 |
C9 |
120.1 |
244.3 |
C7 |
C8 |
HC82 |
HC81 |
240.1 |
122.2 |
C9 |
C8 |
HC82 |
HC81 |
120.0 |
237.9 |
HC82 |
C8 |
C9 |
HC91 |
12.8 |
122.9 |
HC82 |
C8 |
C9 |
HC92 |
263.3 |
1.6 |
HC91 |
C9 |
N2 |
C10 |
321.5 |
340.7 |
N2 |
C9 |
HC91 |
C8 |
239.7 |
242.3 |
N2 |
C9 |
HC91 |
HC92 |
119.8 |
121.1 |
HC91 |
C9 |
C8 |
HC81 |
122.3 |
0.8 |
HC91 |
C9 |
C8 |
HC82 |
12.8 |
122.9 |
C8 |
C9 |
HC91 |
HC92 |
240.2 |
238.7 |
HC92 |
C9 |
N2 |
C10 |
71.0 |
101.9 |
N2 |
C9 |
HC92 |
C8 |
120.4 |
117.6 |
N2 |
C9 |
HC92 |
HC91 |
240.2 |
238.9 |
HC92 |
C9 |
C8 |
HC81 |
12.8 |
239.5 |
HC92 |
C9 |
C8 |
HC82 |
263.3 |
1.6 |
C8 |
C9 |
HC92 |
HC91 |
119.8 |
121.3 |
N2 |
C10 |
H101 |
H102 |
125.3 |
120.0 |
N2 |
C10 |
H101 |
H103 |
234.8 |
239.9 |
H102 |
C10 |
H101 |
H103 |
109.4 |
119.9 |
N2 |
C10 |
H102 |
H101 |
231.5 |
240.0 |
N2 |
C10 |
H102 |
H103 |
115.7 |
120.1 |
H101 |
C10 |
H102 |
H103 |
244.2 |
240.1 |
N2 |
C10 |
H103 |
H101 |
128.4 |
120.1 |
N2 |
C10 |
H103 |
H102 |
244.2 |
240.0 |
H101 |
C10 |
H103 |
H102 |
115.8 |
119.9 |