PDB Chemical Component MBD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MBD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA1 |
OA1 |
1.375 |
1.360 |
| CA1 |
CA2 |
1.360 |
1.391 |
| CA1 |
CA6 |
1.399 |
1.384 |
| OA1 |
HA1 |
0.951 |
0.967 |
| CA2 |
OA2 |
1.369 |
1.360 |
| CA2 |
CA3 |
1.373 |
1.385 |
| OA2 |
HA2 |
0.950 |
0.966 |
| CA3 |
CB3 |
1.479 |
1.507 |
| CA3 |
CA4 |
1.392 |
1.383 |
| CB3 |
HB31 |
1.114 |
1.090 |
| CB3 |
HB32 |
1.115 |
1.090 |
| CB3 |
HB33 |
1.115 |
1.089 |
| CA4 |
CA5 |
1.382 |
1.381 |
| CA4 |
HA4 |
1.103 |
1.080 |
| CA5 |
CA6 |
1.384 |
1.383 |
| CA5 |
HA5 |
1.104 |
1.080 |
| CA6 |
HA6 |
1.103 |
1.080 |
Bond Angles for MBD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OA1 |
CA1 |
CA2 |
119.2 |
120.0 |
| OA1 |
CA1 |
CA6 |
120.7 |
120.1 |
| CA1 |
OA1 |
HA1 |
119.2 |
106.8 |
| CA2 |
CA1 |
CA6 |
120.1 |
119.9 |
| CA1 |
CA2 |
OA2 |
119.5 |
120.1 |
| CA1 |
CA2 |
CA3 |
120.5 |
119.9 |
| CA1 |
CA6 |
CA5 |
119.7 |
120.0 |
| CA1 |
CA6 |
HA6 |
120.7 |
120.0 |
| OA2 |
CA2 |
CA3 |
120.0 |
120.0 |
| CA2 |
OA2 |
HA2 |
119.5 |
106.8 |
| CA2 |
CA3 |
CB3 |
118.3 |
120.1 |
| CA2 |
CA3 |
CA4 |
120.2 |
120.0 |
| CB3 |
CA3 |
CA4 |
121.5 |
119.9 |
| CA3 |
CB3 |
HB31 |
118.2 |
109.5 |
| CA3 |
CB3 |
HB32 |
109.0 |
109.4 |
| CA3 |
CB3 |
HB33 |
109.0 |
109.5 |
| CA3 |
CA4 |
CA5 |
119.6 |
120.2 |
| CA3 |
CA4 |
HA4 |
120.6 |
120.0 |
| HB31 |
CB3 |
HB32 |
109.1 |
109.4 |
| HB31 |
CB3 |
HB33 |
109.1 |
109.5 |
| HB32 |
CB3 |
HB33 |
101.1 |
109.5 |
| CA5 |
CA4 |
HA4 |
119.8 |
119.9 |
| CA4 |
CA5 |
CA6 |
119.9 |
120.1 |
| CA4 |
CA5 |
HA5 |
120.0 |
120.0 |
| CA6 |
CA5 |
HA5 |
120.1 |
119.9 |
| CA5 |
CA6 |
HA6 |
119.6 |
120.0 |
Torsion Angles for MBD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA2 |
CA1 |
OA1 |
CA6 |
180.3 |
180.2 |
| OA1 |
CA1 |
CA2 |
OA2 |
359.8 |
359.8 |
| OA1 |
CA1 |
CA2 |
CA3 |
180.4 |
180.3 |
| OA1 |
CA1 |
CA6 |
CA5 |
179.3 |
179.9 |
| OA1 |
CA1 |
CA6 |
HA6 |
359.3 |
0.0 |
| OA1 |
CA1 |
CA2 |
CA6 |
179.7 |
179.8 |
| CA2 |
CA1 |
OA1 |
HA1 |
180.0 |
270.2 |
| CA2 |
CA1 |
CA6 |
CA5 |
359.0 |
359.7 |
| CA2 |
CA1 |
CA6 |
HA6 |
179.0 |
179.8 |
| OA2 |
CA2 |
CA1 |
CA3 |
179.4 |
179.6 |
| CA1 |
CA2 |
OA2 |
HA2 |
180.0 |
90.0 |
| CA1 |
CA2 |
CA3 |
CB3 |
180.0 |
179.8 |
| CA1 |
CA2 |
CA3 |
CA4 |
359.6 |
359.6 |
| OA1 |
CA1 |
CA6 |
CA2 |
180.3 |
180.2 |
| CA6 |
CA1 |
OA1 |
HA1 |
359.7 |
90.0 |
| CA6 |
CA1 |
CA2 |
OA2 |
180.1 |
180.0 |
| CA6 |
CA1 |
CA2 |
CA3 |
0.7 |
0.5 |
| CA4 |
CA5 |
CA6 |
CA1 |
0.9 |
0.0 |
| CA1 |
CA6 |
CA5 |
HA5 |
180.9 |
180.0 |
| CA5 |
CA6 |
CA1 |
HA6 |
180.0 |
179.9 |
| HA1 |
OA1 |
CA1 |
CA2 |
180.0 |
270.2 |
| HA1 |
OA1 |
CA1 |
CA6 |
359.7 |
90.0 |
| OA2 |
CA2 |
CA1 |
CA6 |
180.1 |
180.0 |
| CA1 |
CA2 |
OA2 |
CA3 |
180.6 |
180.4 |
| OA2 |
CA2 |
CA3 |
CB3 |
0.6 |
0.3 |
| OA2 |
CA2 |
CA3 |
CA4 |
180.2 |
180.0 |
| CA3 |
CA2 |
CA1 |
CA6 |
0.7 |
0.5 |
| CA1 |
CA2 |
CA3 |
OA2 |
179.4 |
179.6 |
| CA3 |
CA2 |
OA2 |
HA2 |
359.4 |
269.5 |
| CB3 |
CA3 |
CA2 |
CA4 |
180.4 |
180.2 |
| CA2 |
CA3 |
CB3 |
HB31 |
180.0 |
269.8 |
| CA2 |
CA3 |
CB3 |
HB32 |
305.2 |
29.6 |
| CA2 |
CA3 |
CB3 |
HB33 |
54.7 |
149.7 |
| CA2 |
CA3 |
CA4 |
CA5 |
0.3 |
0.2 |
| CA2 |
CA3 |
CA4 |
HA4 |
180.2 |
180.3 |
| HA2 |
OA2 |
CA2 |
CA3 |
359.4 |
269.5 |
| CA2 |
CA3 |
CB3 |
CA4 |
179.6 |
179.8 |
| CB3 |
CA3 |
CA4 |
CA5 |
179.9 |
180.0 |
| CB3 |
CA3 |
CA4 |
HA4 |
359.9 |
0.0 |
| HB31 |
CB3 |
CA3 |
HB32 |
234.8 |
240.1 |
| HB31 |
CB3 |
CA3 |
HB33 |
125.3 |
120.0 |
| HB32 |
CB3 |
CA3 |
HB33 |
250.5 |
239.9 |
| CA2 |
CA3 |
CA4 |
CB3 |
180.4 |
180.2 |
| CA4 |
CA3 |
CB3 |
HB31 |
0.4 |
90.0 |
| CA4 |
CA3 |
CB3 |
HB32 |
125.6 |
209.9 |
| CA4 |
CA3 |
CB3 |
HB33 |
235.1 |
330.0 |
| CA5 |
CA4 |
CA3 |
HA4 |
180.0 |
179.9 |
| CA3 |
CA4 |
CA5 |
CA6 |
359.5 |
360.0 |
| CA3 |
CA4 |
CA5 |
HA5 |
179.5 |
180.0 |
| HB31 |
CB3 |
CA3 |
CA4 |
0.4 |
90.0 |
| CA3 |
CB3 |
HB31 |
HB32 |
125.2 |
119.9 |
| CA3 |
CB3 |
HB31 |
HB33 |
234.8 |
239.9 |
| HB32 |
CB3 |
HB31 |
HB33 |
109.6 |
120.0 |
| HB32 |
CB3 |
CA3 |
CA4 |
125.6 |
209.9 |
| CA3 |
CB3 |
HB32 |
HB31 |
229.6 |
240.1 |
| CA3 |
CB3 |
HB32 |
HB33 |
114.7 |
120.1 |
| HB31 |
CB3 |
HB32 |
HB33 |
245.1 |
240.0 |
| HB33 |
CB3 |
CA3 |
CA4 |
235.1 |
330.0 |
| CA3 |
CB3 |
HB33 |
HB31 |
130.4 |
120.1 |
| CA3 |
CB3 |
HB33 |
HB32 |
245.3 |
240.0 |
| HB31 |
CB3 |
HB33 |
HB32 |
114.8 |
119.9 |
| CA1 |
CA6 |
CA5 |
CA4 |
0.9 |
0.0 |
| CA3 |
CA4 |
CA5 |
HA4 |
180.0 |
180.1 |
| CA6 |
CA5 |
CA4 |
HA5 |
180.0 |
180.0 |
| CA4 |
CA5 |
CA6 |
HA6 |
180.9 |
179.9 |
| CA3 |
CA4 |
HA4 |
CA5 |
180.0 |
179.9 |
| HA4 |
CA4 |
CA5 |
CA6 |
179.5 |
179.9 |
| HA4 |
CA4 |
CA5 |
HA5 |
359.5 |
359.9 |
| CA1 |
CA6 |
CA5 |
HA6 |
180.0 |
180.1 |
| CA6 |
CA5 |
CA4 |
HA4 |
179.5 |
179.9 |
| CA4 |
CA5 |
CA6 |
HA5 |
180.0 |
180.0 |
| HA5 |
CA5 |
CA4 |
HA4 |
359.5 |
359.9 |
| CA4 |
CA5 |
HA5 |
CA6 |
180.0 |
180.0 |
| HA5 |
CA5 |
CA6 |
HA6 |
0.9 |
359.9 |
| CA1 |
CA6 |
HA6 |
CA5 |
180.0 |
179.9 |
| HA6 |
CA6 |
CA5 |
HA5 |
0.9 |
359.9 |