PDB Chemical Component LPA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LPA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.542 |
1.507 |
| C1 |
O2 |
1.269 |
1.209 |
| C1 |
O1 |
1.277 |
1.341 |
| O1 |
HO1 |
0.950 |
0.967 |
| C3 |
C2 |
1.567 |
1.530 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| C4 |
C3 |
1.535 |
1.530 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C5 |
C4 |
1.535 |
1.530 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.101 |
1.090 |
| C6 |
C5 |
1.523 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.099 |
1.090 |
| C7 |
C6 |
1.529 |
1.529 |
| C6 |
S6 |
1.765 |
1.830 |
| C6 |
H6 |
1.100 |
1.090 |
| S8 |
S6 |
2.004 |
2.073 |
| C8 |
C7 |
1.544 |
1.542 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.091 |
| C8 |
S8 |
1.766 |
1.843 |
| C8 |
H8 |
1.100 |
1.091 |
| C8 |
H8A |
1.100 |
1.090 |
Bond Angles for LPA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O2 |
115.8 |
120.0 |
| O1 |
C1 |
O2 |
123.2 |
120.0 |
| C1 |
O1 |
HO1 |
109.5 |
117.0 |
| C3 |
C2 |
H2 |
111.7 |
109.5 |
| C3 |
C2 |
H2A |
111.6 |
109.5 |
| H2 |
C2 |
H2A |
107.2 |
109.4 |
| C4 |
C3 |
H3 |
111.0 |
109.5 |
| C4 |
C3 |
H3A |
111.0 |
109.5 |
| H3 |
C3 |
H3A |
107.9 |
109.5 |
| C5 |
C4 |
H4 |
109.4 |
109.4 |
| C5 |
C4 |
H4A |
109.5 |
109.5 |
| H4 |
C4 |
H4A |
109.5 |
109.5 |
| C6 |
C5 |
H5 |
108.0 |
109.5 |
| C6 |
C5 |
H5A |
108.0 |
109.5 |
| H5 |
C5 |
H5A |
110.9 |
109.4 |
| C7 |
C6 |
H6 |
111.7 |
109.4 |
| S6 |
C6 |
H6 |
109.7 |
109.6 |
| C8 |
C7 |
H7 |
106.9 |
108.7 |
| C8 |
C7 |
H7A |
106.9 |
108.5 |
| H7 |
C7 |
H7A |
111.9 |
108.6 |
| S8 |
C8 |
H8 |
109.7 |
110.5 |
| S8 |
C8 |
H8A |
109.6 |
110.5 |
| H8 |
C8 |
H8A |
109.3 |
110.6 |
Torsion Angles for LPA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
O2 |
179.5 |
179.7 |
| C2 |
C1 |
O1 |
HO1 |
180.6 |
180.3 |
| O2 |
C1 |
O1 |
HO1 |
0.0 |
360.0 |
| C2 |
C1 |
O1 |
O2 |
180.6 |
180.3 |
| HO1 |
O1 |
C1 |
O2 |
0.0 |
360.0 |
| H2 |
C2 |
C3 |
H2A |
120.0 |
119.9 |
| H2 |
C2 |
C1 |
O2 |
245.8 |
120.1 |
| C3 |
C2 |
H2 |
H2A |
237.4 |
240.0 |
| H2A |
C2 |
C1 |
O2 |
5.8 |
240.0 |
| C3 |
C2 |
H2A |
H2 |
122.6 |
120.0 |
| C4 |
C3 |
C2 |
H2 |
350.8 |
60.0 |
| C4 |
C3 |
C2 |
H2A |
230.8 |
300.0 |
| H3 |
C3 |
C4 |
H3A |
120.0 |
120.0 |
| H3 |
C3 |
C2 |
H2 |
110.8 |
180.0 |
| H3 |
C3 |
C2 |
H2A |
350.8 |
60.0 |
| C4 |
C3 |
H3 |
H3A |
238.1 |
240.0 |
| H3A |
C3 |
C2 |
H2 |
230.8 |
299.9 |
| H3A |
C3 |
C2 |
H2A |
110.8 |
180.0 |
| C4 |
C3 |
H3A |
H3 |
121.9 |
120.0 |
| C5 |
C4 |
C3 |
H3 |
357.2 |
60.0 |
| C5 |
C4 |
C3 |
H3A |
237.2 |
300.0 |
| H4 |
C4 |
C5 |
H4A |
120.0 |
120.0 |
| H4 |
C4 |
C3 |
H3 |
117.2 |
180.0 |
| H4 |
C4 |
C3 |
H3A |
357.2 |
60.0 |
| C5 |
C4 |
H4 |
H4A |
240.0 |
240.0 |
| H4A |
C4 |
C3 |
H3 |
237.2 |
300.0 |
| H4A |
C4 |
C3 |
H3A |
117.2 |
180.0 |
| C5 |
C4 |
H4A |
H4 |
120.0 |
120.0 |
| C6 |
C5 |
C4 |
H4 |
112.8 |
60.0 |
| C6 |
C5 |
C4 |
H4A |
352.8 |
300.0 |
| H5 |
C5 |
C6 |
H5A |
120.0 |
120.0 |
| H5 |
C5 |
C4 |
H4 |
232.8 |
180.0 |
| H5 |
C5 |
C4 |
H4A |
112.8 |
60.1 |
| C6 |
C5 |
H5 |
H5A |
241.8 |
240.0 |
| H5A |
C5 |
C4 |
H4 |
352.8 |
300.0 |
| H5A |
C5 |
C4 |
H4A |
232.8 |
180.0 |
| C6 |
C5 |
H5A |
H5 |
118.2 |
120.0 |
| C7 |
C6 |
C5 |
H5 |
71.4 |
66.0 |
| C7 |
C6 |
C5 |
H5A |
311.4 |
306.1 |
| S6 |
C6 |
C7 |
H6 |
239.5 |
240.1 |
| S6 |
C6 |
C5 |
H5 |
313.8 |
306.4 |
| S6 |
C6 |
C5 |
H5A |
193.7 |
186.5 |
| C7 |
C6 |
S6 |
H6 |
121.7 |
119.8 |
| H6 |
C6 |
C5 |
H5 |
193.2 |
186.1 |
| H6 |
C6 |
C5 |
H5A |
73.2 |
66.2 |
| S8 |
S6 |
C6 |
H6 |
224.9 |
243.5 |
| C8 |
C7 |
C6 |
H6 |
146.0 |
86.4 |
| H7 |
C7 |
C8 |
H7A |
120.0 |
117.9 |
| H7 |
C7 |
C6 |
H6 |
266.0 |
207.5 |
| C8 |
C7 |
H7 |
H7A |
243.3 |
242.1 |
| H7A |
C7 |
C6 |
H6 |
26.0 |
325.6 |
| C8 |
C7 |
H7A |
H7 |
116.7 |
118.0 |
| S8 |
C8 |
C7 |
H7 |
214.4 |
288.6 |
| S8 |
C8 |
C7 |
H7A |
94.4 |
170.6 |
| H8 |
C8 |
S8 |
H8A |
120.0 |
122.8 |
| H8 |
C8 |
C7 |
H7 |
334.4 |
47.1 |
| H8 |
C8 |
C7 |
H7A |
214.4 |
289.2 |
| S8 |
C8 |
H8 |
H8A |
239.8 |
237.2 |
| H8A |
C8 |
C7 |
H7 |
94.4 |
170.0 |
| H8A |
C8 |
C7 |
H7A |
334.4 |
52.1 |
| S8 |
C8 |
H8A |
H8 |
120.2 |
122.8 |