PDB Chemical Component LGC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LGC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.404 |
1.514 |
C1 |
O5 |
1.401 |
1.351 |
C1 |
O1 |
1.269 |
1.207 |
C2 |
O2 |
1.406 |
1.428 |
C2 |
C3 |
1.544 |
1.532 |
C2 |
H2 |
1.115 |
1.090 |
O5 |
C5 |
1.443 |
1.456 |
O2 |
HO2 |
0.950 |
0.966 |
C3 |
O3 |
1.435 |
1.428 |
C3 |
C4 |
1.547 |
1.531 |
C3 |
H3 |
1.115 |
1.090 |
O3 |
HO3 |
0.949 |
0.966 |
C4 |
O4 |
1.442 |
1.429 |
C4 |
C5 |
1.561 |
1.532 |
C4 |
H4 |
1.115 |
1.090 |
O4 |
HO4 |
0.949 |
0.967 |
C5 |
C6 |
1.550 |
1.530 |
C5 |
H5 |
1.115 |
1.090 |
C6 |
O6 |
1.480 |
1.428 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.114 |
1.089 |
O6 |
HO6 |
0.950 |
0.966 |
Bond Angles for LGC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O5 |
130.4 |
117.6 |
C2 |
C1 |
O1 |
121.5 |
121.2 |
C1 |
C2 |
O2 |
115.0 |
109.7 |
C1 |
C2 |
C3 |
108.5 |
108.4 |
C1 |
C2 |
H2 |
107.3 |
109.7 |
O5 |
C1 |
O1 |
107.5 |
121.2 |
C1 |
O5 |
C5 |
117.0 |
118.0 |
O2 |
C2 |
C3 |
112.2 |
109.8 |
O2 |
C2 |
H2 |
103.1 |
109.6 |
C2 |
O2 |
HO2 |
115.1 |
106.9 |
C3 |
C2 |
H2 |
110.4 |
109.7 |
C2 |
C3 |
O3 |
106.0 |
109.5 |
C2 |
C3 |
C4 |
104.9 |
109.2 |
C2 |
C3 |
H3 |
114.9 |
109.5 |
O5 |
C5 |
C4 |
103.3 |
109.0 |
O5 |
C5 |
C6 |
101.1 |
109.6 |
O5 |
C5 |
H5 |
122.8 |
109.6 |
O3 |
C3 |
C4 |
110.8 |
109.6 |
O3 |
C3 |
H3 |
109.5 |
109.5 |
C3 |
O3 |
HO3 |
106.0 |
106.8 |
C4 |
C3 |
H3 |
110.5 |
109.4 |
C3 |
C4 |
O4 |
111.2 |
109.5 |
C3 |
C4 |
C5 |
106.2 |
109.4 |
C3 |
C4 |
H4 |
108.8 |
109.5 |
O4 |
C4 |
C5 |
103.4 |
109.6 |
O4 |
C4 |
H4 |
111.3 |
109.5 |
C4 |
O4 |
HO4 |
111.1 |
106.8 |
C5 |
C4 |
H4 |
115.9 |
109.3 |
C4 |
C5 |
C6 |
120.5 |
109.6 |
C4 |
C5 |
H5 |
104.2 |
109.5 |
C6 |
C5 |
H5 |
106.3 |
109.6 |
C5 |
C6 |
O6 |
110.5 |
109.5 |
C5 |
C6 |
H61 |
111.8 |
109.4 |
C5 |
C6 |
H62 |
111.8 |
109.5 |
O6 |
C6 |
H61 |
111.8 |
109.4 |
O6 |
C6 |
H62 |
111.8 |
109.5 |
C6 |
O6 |
HO6 |
110.5 |
106.8 |
H61 |
C6 |
H62 |
98.6 |
109.5 |
Torsion Angles for LGC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5 |
C1 |
C2 |
O1 |
170.2 |
180.0 |
C2 |
C1 |
O5 |
C5 |
344.4 |
312.2 |
O2 |
C2 |
C1 |
C3 |
126.7 |
119.9 |
O2 |
C2 |
C1 |
H2 |
245.9 |
239.5 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
59.9 |
C3 |
C2 |
C1 |
H2 |
119.3 |
119.7 |
C1 |
C2 |
C3 |
O3 |
198.3 |
186.3 |
C1 |
C2 |
C3 |
C4 |
315.7 |
306.3 |
C1 |
C2 |
C3 |
H3 |
77.2 |
66.1 |
C2 |
C1 |
O5 |
O1 |
188.8 |
180.0 |
O5 |
C1 |
C2 |
O2 |
144.0 |
167.7 |
O5 |
C1 |
C2 |
C3 |
17.3 |
47.8 |
O5 |
C1 |
C2 |
H2 |
258.0 |
288.1 |
C1 |
O5 |
C5 |
C4 |
39.1 |
50.4 |
C1 |
O5 |
C5 |
C6 |
164.4 |
170.4 |
C1 |
O5 |
C5 |
H5 |
282.2 |
290.6 |
C2 |
C1 |
O1 |
O5 |
172.2 |
180.0 |
O1 |
C1 |
C2 |
O2 |
333.8 |
347.6 |
O1 |
C1 |
C2 |
C3 |
207.1 |
227.8 |
O1 |
C1 |
C2 |
H2 |
87.9 |
108.1 |
O1 |
C1 |
O5 |
C5 |
155.6 |
132.2 |
O2 |
C2 |
C1 |
O5 |
144.0 |
167.7 |
O2 |
C2 |
C1 |
O1 |
333.8 |
347.6 |
C1 |
C2 |
O2 |
C3 |
235.3 |
241.0 |
C1 |
C2 |
O2 |
H2 |
116.4 |
120.5 |
C3 |
C2 |
O2 |
H2 |
241.2 |
239.5 |
O2 |
C2 |
C3 |
O3 |
70.0 |
66.5 |
O2 |
C2 |
C3 |
C4 |
187.4 |
186.5 |
O2 |
C2 |
C3 |
H3 |
309.0 |
306.3 |
C3 |
C2 |
C1 |
O5 |
17.3 |
47.8 |
C3 |
C2 |
C1 |
O1 |
207.1 |
227.8 |
C1 |
C2 |
C3 |
O2 |
128.2 |
119.8 |
C1 |
C2 |
C3 |
H2 |
242.7 |
240.3 |
O2 |
C2 |
C3 |
H2 |
114.5 |
120.5 |
C3 |
C2 |
O2 |
HO2 |
304.7 |
178.9 |
O3 |
C3 |
C2 |
C4 |
242.6 |
239.9 |
O3 |
C3 |
C2 |
H3 |
121.0 |
120.1 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
300.1 |
C4 |
C3 |
C2 |
H3 |
238.4 |
240.2 |
C2 |
C3 |
C4 |
O4 |
186.5 |
181.0 |
C2 |
C3 |
C4 |
C5 |
74.7 |
60.8 |
C2 |
C3 |
C4 |
H4 |
309.3 |
301.1 |
H2 |
C2 |
C1 |
O5 |
258.0 |
288.1 |
H2 |
C2 |
C1 |
O1 |
87.9 |
108.1 |
C1 |
C2 |
H2 |
O2 |
238.2 |
239.5 |
C1 |
C2 |
H2 |
C3 |
118.1 |
118.9 |
O2 |
C2 |
H2 |
C3 |
239.9 |
239.4 |
H2 |
C2 |
O2 |
HO2 |
63.5 |
299.5 |
H2 |
C2 |
C3 |
O3 |
315.6 |
306.0 |
H2 |
C2 |
C3 |
C4 |
73.0 |
66.0 |
H2 |
C2 |
C3 |
H3 |
194.5 |
185.8 |
C5 |
O5 |
C1 |
O1 |
155.6 |
132.2 |
C3 |
C4 |
C5 |
O5 |
289.8 |
303.7 |
O4 |
C4 |
C5 |
O5 |
172.7 |
183.6 |
O5 |
C5 |
C4 |
H4 |
50.7 |
63.6 |
C4 |
C5 |
O5 |
C6 |
234.7 |
240.1 |
C4 |
C5 |
O5 |
H5 |
116.9 |
119.8 |
C6 |
C5 |
O5 |
H5 |
242.2 |
239.7 |
O5 |
C5 |
C6 |
O6 |
299.1 |
60.2 |
O5 |
C5 |
C6 |
H61 |
64.3 |
300.3 |
O5 |
C5 |
C6 |
H62 |
173.8 |
180.3 |
HO2 |
O2 |
C2 |
C3 |
304.7 |
178.9 |
HO2 |
O2 |
C2 |
H2 |
63.5 |
299.5 |
O3 |
C3 |
C2 |
H2 |
315.6 |
306.0 |
C2 |
C3 |
O3 |
C4 |
113.4 |
119.9 |
C2 |
C3 |
O3 |
H3 |
235.5 |
239.9 |
C4 |
C3 |
O3 |
H3 |
122.1 |
120.0 |
O3 |
C3 |
C4 |
O4 |
300.5 |
301.0 |
O3 |
C3 |
C4 |
C5 |
188.7 |
180.9 |
O3 |
C3 |
C4 |
H4 |
63.4 |
61.1 |
C4 |
C3 |
C2 |
H2 |
73.0 |
66.0 |
C2 |
C3 |
C4 |
O3 |
246.0 |
240.0 |
C2 |
C3 |
C4 |
H3 |
124.4 |
119.9 |
O5 |
C5 |
C4 |
C3 |
289.8 |
303.7 |
O3 |
C3 |
C4 |
H3 |
238.5 |
239.9 |
C4 |
C3 |
O3 |
HO3 |
66.7 |
180.2 |
O4 |
C4 |
C3 |
C5 |
111.8 |
120.2 |
O4 |
C4 |
C3 |
H4 |
237.1 |
240.0 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
60.0 |
C5 |
C4 |
C3 |
H4 |
125.3 |
119.8 |
C3 |
C4 |
C5 |
C6 |
178.3 |
183.8 |
C3 |
C4 |
C5 |
H5 |
59.1 |
63.6 |
H3 |
C3 |
C2 |
H2 |
194.5 |
185.8 |
C2 |
C3 |
H3 |
O3 |
119.1 |
120.1 |
C2 |
C3 |
H3 |
C4 |
241.5 |
240.3 |
O3 |
C3 |
H3 |
C4 |
122.3 |
120.2 |
H3 |
C3 |
O3 |
HO3 |
304.5 |
60.2 |
H3 |
C3 |
C4 |
O4 |
62.0 |
61.2 |
H3 |
C3 |
C4 |
C5 |
310.3 |
301.0 |
H3 |
C3 |
C4 |
H4 |
184.9 |
181.2 |
HO3 |
O3 |
C3 |
C4 |
66.7 |
180.2 |
HO3 |
O3 |
C3 |
H3 |
304.5 |
60.2 |
O5 |
C5 |
C4 |
O4 |
172.7 |
183.6 |
O4 |
C4 |
C3 |
H3 |
62.0 |
61.2 |
C3 |
C4 |
O4 |
C5 |
246.5 |
240.0 |
C3 |
C4 |
O4 |
H4 |
121.4 |
120.0 |
C5 |
C4 |
O4 |
H4 |
234.9 |
240.1 |
O4 |
C4 |
C5 |
C6 |
61.2 |
63.7 |
O4 |
C4 |
C5 |
H5 |
302.0 |
303.5 |
O5 |
C5 |
C4 |
C6 |
111.6 |
120.0 |
O5 |
C5 |
C4 |
H5 |
230.7 |
240.2 |
C5 |
C4 |
C3 |
H3 |
310.3 |
301.0 |
C3 |
C4 |
C5 |
O4 |
117.1 |
120.1 |
C3 |
C4 |
C5 |
H4 |
239.2 |
240.1 |
O4 |
C4 |
C5 |
H4 |
122.1 |
120.0 |
C5 |
C4 |
O4 |
HO4 |
293.5 |
180.0 |
C6 |
C5 |
C4 |
H5 |
119.1 |
120.2 |
C4 |
C5 |
C6 |
O6 |
51.8 |
179.8 |
C4 |
C5 |
C6 |
H61 |
177.1 |
59.8 |
C4 |
C5 |
C6 |
H62 |
286.6 |
299.8 |
H4 |
C4 |
C3 |
H3 |
184.9 |
181.2 |
C3 |
C4 |
H4 |
O4 |
237.2 |
240.0 |
C3 |
C4 |
H4 |
C5 |
119.4 |
119.8 |
O4 |
C4 |
H4 |
C5 |
242.2 |
239.9 |
H4 |
C4 |
O4 |
HO4 |
58.6 |
300.0 |
H4 |
C4 |
C5 |
C6 |
299.1 |
303.6 |
H4 |
C4 |
C5 |
H5 |
180.0 |
183.4 |
HO4 |
O4 |
C4 |
C5 |
293.5 |
180.0 |
HO4 |
O4 |
C4 |
H4 |
58.6 |
300.0 |
O5 |
C5 |
C6 |
C4 |
247.2 |
240.5 |
O5 |
C5 |
C6 |
H5 |
129.2 |
120.3 |
C6 |
C5 |
C4 |
H4 |
299.1 |
303.6 |
C4 |
C5 |
C6 |
H5 |
241.9 |
239.8 |
O6 |
C6 |
C5 |
H61 |
234.8 |
120.0 |
O6 |
C6 |
C5 |
H62 |
125.3 |
239.9 |
C5 |
C6 |
O6 |
HO6 |
179.9 |
180.0 |
H61 |
C6 |
C5 |
H62 |
250.5 |
120.0 |
O5 |
C5 |
H5 |
C4 |
116.4 |
119.5 |
O5 |
C5 |
H5 |
C6 |
244.8 |
239.7 |
H5 |
C5 |
C4 |
H4 |
180.0 |
183.4 |
C4 |
C5 |
H5 |
C6 |
128.3 |
120.2 |
H5 |
C5 |
C6 |
O6 |
169.9 |
300.0 |
H5 |
C5 |
C6 |
H61 |
295.1 |
180.0 |
H5 |
C5 |
C6 |
H62 |
44.6 |
60.0 |
O6 |
C6 |
C5 |
H5 |
169.9 |
300.0 |
C5 |
C6 |
O6 |
H61 |
125.2 |
240.0 |
C5 |
C6 |
O6 |
H62 |
234.7 |
120.0 |
H61 |
C6 |
O6 |
H62 |
109.5 |
240.0 |
H61 |
C6 |
C5 |
H5 |
295.1 |
180.0 |
C5 |
C6 |
H61 |
O6 |
235.5 |
120.0 |
C5 |
C6 |
H61 |
H62 |
117.8 |
240.0 |
O6 |
C6 |
H61 |
H62 |
242.2 |
120.0 |
H61 |
C6 |
O6 |
HO6 |
54.7 |
300.0 |
H62 |
C6 |
C5 |
H5 |
44.6 |
60.0 |
C5 |
C6 |
H62 |
O6 |
124.5 |
240.0 |
C5 |
C6 |
H62 |
H61 |
242.3 |
120.0 |
O6 |
C6 |
H62 |
H61 |
117.8 |
240.0 |
H62 |
C6 |
O6 |
HO6 |
305.2 |
60.0 |
HO6 |
O6 |
C6 |
H61 |
54.7 |
300.0 |
HO6 |
O6 |
C6 |
H62 |
305.2 |
60.0 |