PDB Chemical Component HY1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HY1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1' |
C2' |
1.413 |
1.382 |
| C1' |
C6' |
1.400 |
1.380 |
| C1' |
CA |
1.541 |
1.507 |
| C2' |
C3' |
1.427 |
1.383 |
| C2' |
H2 |
1.102 |
1.080 |
| C3' |
C4' |
1.394 |
1.381 |
| C3' |
H3 |
1.102 |
1.080 |
| C4' |
C5' |
1.401 |
1.382 |
| C4' |
H4 |
1.103 |
1.080 |
| C5' |
C6' |
1.421 |
1.382 |
| C5' |
H5 |
1.103 |
1.081 |
| C6' |
H6 |
1.103 |
1.080 |
| CA |
C |
1.530 |
1.507 |
| CA |
HA1 |
1.114 |
1.090 |
| CA |
HA2 |
1.116 |
1.089 |
| C |
O |
1.198 |
1.207 |
| C |
H |
1.103 |
1.080 |
Bond Angles for HY1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
C1' |
C6' |
118.5 |
120.1 |
| C2' |
C1' |
CA |
120.0 |
119.9 |
| C1' |
C2' |
C3' |
120.5 |
119.9 |
| C1' |
C2' |
H2 |
119.2 |
120.1 |
| C6' |
C1' |
CA |
121.5 |
120.0 |
| C1' |
C6' |
C5' |
120.5 |
120.0 |
| C1' |
C6' |
H6 |
119.0 |
120.0 |
| C1' |
CA |
C |
109.2 |
109.5 |
| C1' |
CA |
HA1 |
112.3 |
109.5 |
| C1' |
CA |
HA2 |
112.3 |
109.5 |
| C3' |
C2' |
H2 |
120.3 |
120.0 |
| C2' |
C3' |
C4' |
120.7 |
120.0 |
| C2' |
C3' |
H3 |
120.9 |
120.0 |
| C4' |
C3' |
H3 |
118.4 |
120.0 |
| C3' |
C4' |
C5' |
118.7 |
120.0 |
| C3' |
C4' |
H4 |
120.4 |
120.0 |
| C5' |
C4' |
H4 |
120.9 |
120.0 |
| C4' |
C5' |
C6' |
121.2 |
120.0 |
| C4' |
C5' |
H5 |
118.7 |
120.0 |
| C6' |
C5' |
H5 |
120.1 |
120.0 |
| C5' |
C6' |
H6 |
120.5 |
120.0 |
| C |
CA |
HA1 |
112.3 |
109.5 |
| C |
CA |
HA2 |
112.3 |
109.4 |
| CA |
C |
O |
125.7 |
120.0 |
| CA |
C |
H |
130.5 |
120.0 |
| HA1 |
CA |
HA2 |
98.1 |
109.5 |
| O |
C |
H |
103.8 |
120.0 |
Torsion Angles for HY1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6' |
C1' |
C2' |
CA |
178.1 |
180.3 |
| C2' |
C1' |
C6' |
C5' |
359.7 |
359.6 |
| C2' |
C1' |
C6' |
H6 |
179.7 |
179.9 |
| C2' |
C1' |
CA |
C |
281.0 |
90.0 |
| C2' |
C1' |
CA |
HA1 |
46.2 |
330.0 |
| C2' |
C1' |
CA |
HA2 |
155.7 |
210.0 |
| C3' |
C2' |
C1' |
H2 |
180.1 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
359.7 |
360.0 |
| C1' |
C2' |
C3' |
H3 |
179.7 |
179.9 |
| C2' |
C1' |
C6' |
CA |
181.9 |
179.7 |
| C6' |
C1' |
C2' |
C3' |
0.5 |
0.3 |
| C6' |
C1' |
C2' |
H2 |
180.4 |
180.2 |
| C6' |
C1' |
CA |
C |
102.9 |
269.7 |
| C6' |
C1' |
CA |
HA1 |
228.2 |
149.7 |
| C6' |
C1' |
CA |
HA2 |
337.6 |
29.7 |
| C4' |
C5' |
C6' |
C1' |
360.0 |
0.3 |
| C1' |
C6' |
C5' |
H5 |
180.0 |
180.3 |
| C5' |
C6' |
C1' |
H6 |
180.0 |
179.6 |
| C2' |
C1' |
CA |
C6' |
178.0 |
180.3 |
| CA |
C1' |
C2' |
C3' |
182.4 |
180.0 |
| CA |
C1' |
C2' |
H2 |
2.3 |
359.9 |
| CA |
C1' |
C6' |
C5' |
177.7 |
179.9 |
| CA |
C1' |
C6' |
H6 |
357.7 |
0.2 |
| C |
CA |
C1' |
HA1 |
234.7 |
120.0 |
| C |
CA |
C1' |
HA2 |
125.3 |
240.0 |
| C1' |
CA |
C |
O |
335.1 |
120.0 |
| C1' |
CA |
C |
H |
155.1 |
300.3 |
| HA1 |
CA |
C1' |
HA2 |
250.6 |
120.0 |
| C3' |
C2' |
C1' |
C6' |
0.5 |
0.3 |
| C3' |
C2' |
C1' |
CA |
182.4 |
180.0 |
| C1' |
C2' |
C3' |
H2 |
179.9 |
180.0 |
| C4' |
C3' |
C2' |
H3 |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
360.0 |
359.9 |
| C2' |
C3' |
C4' |
H4 |
180.0 |
180.0 |
| H2 |
C2' |
C1' |
C6' |
180.4 |
180.2 |
| H2 |
C2' |
C1' |
CA |
2.3 |
359.9 |
| C1' |
C2' |
H2 |
C3' |
180.1 |
180.0 |
| H2 |
C2' |
C3' |
C4' |
179.7 |
180.0 |
| H2 |
C2' |
C3' |
H3 |
359.7 |
360.0 |
| C4' |
C3' |
C2' |
H2 |
179.7 |
180.0 |
| C2' |
C3' |
C4' |
H3 |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
H4 |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
0.2 |
359.9 |
| C3' |
C4' |
C5' |
H5 |
180.2 |
180.0 |
| H3 |
C3' |
C2' |
H2 |
359.7 |
360.0 |
| C2' |
C3' |
H3 |
C4' |
180.0 |
180.1 |
| H3 |
C3' |
C4' |
C5' |
180.0 |
180.0 |
| H3 |
C3' |
C4' |
H4 |
360.0 |
0.0 |
| C1' |
C6' |
C5' |
C4' |
360.0 |
0.3 |
| C5' |
C4' |
C3' |
H3 |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
H4 |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
H5 |
180.0 |
179.9 |
| C4' |
C5' |
C6' |
H6 |
180.0 |
180.0 |
| H4 |
C4' |
C3' |
H3 |
360.0 |
0.0 |
| C3' |
C4' |
H4 |
C5' |
180.0 |
180.0 |
| H4 |
C4' |
C5' |
C6' |
180.2 |
179.9 |
| H4 |
C4' |
C5' |
H5 |
0.2 |
359.9 |
| C5' |
C6' |
C1' |
CA |
177.7 |
179.9 |
| C1' |
C6' |
C5' |
H6 |
180.0 |
180.4 |
| C6' |
C5' |
C4' |
H4 |
180.2 |
179.9 |
| C4' |
C5' |
C6' |
H5 |
180.0 |
180.1 |
| H5 |
C5' |
C4' |
H4 |
0.2 |
359.9 |
| C4' |
C5' |
H5 |
C6' |
180.0 |
179.9 |
| H5 |
C5' |
C6' |
H6 |
0.0 |
359.9 |
| H6 |
C6' |
C1' |
CA |
357.7 |
0.2 |
| C1' |
C6' |
H6 |
C5' |
180.0 |
179.6 |
| H6 |
C6' |
C5' |
H5 |
0.0 |
359.9 |
| C1' |
CA |
C |
HA1 |
125.3 |
240.0 |
| C1' |
CA |
C |
HA2 |
234.8 |
120.1 |
| HA1 |
CA |
C |
HA2 |
109.5 |
240.0 |
| O |
C |
CA |
H |
180.0 |
179.7 |
| C1' |
CA |
HA1 |
C |
236.4 |
120.0 |
| C1' |
CA |
HA1 |
HA2 |
118.2 |
240.0 |
| C |
CA |
HA1 |
HA2 |
241.8 |
120.0 |
| HA1 |
CA |
C |
O |
209.8 |
240.0 |
| HA1 |
CA |
C |
H |
29.8 |
60.3 |
| C1' |
CA |
HA2 |
C |
123.6 |
240.0 |
| C1' |
CA |
HA2 |
HA1 |
241.8 |
120.0 |
| C |
CA |
HA2 |
HA1 |
118.2 |
240.0 |
| HA2 |
CA |
C |
O |
100.3 |
360.0 |
| HA2 |
CA |
C |
H |
280.4 |
180.3 |
| O |
C |
CA |
HA1 |
209.8 |
240.0 |
| O |
C |
CA |
HA2 |
100.3 |
360.0 |
| CA |
C |
O |
H |
180.0 |
180.3 |
| H |
C |
CA |
HA1 |
29.8 |
60.3 |
| H |
C |
CA |
HA2 |
280.4 |
180.3 |
| CA |
C |
H |
O |
180.0 |
179.7 |