PDB Chemical Component HBA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HBA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1' |
O1' |
1.250 |
1.212 |
| C1' |
C1 |
1.389 |
1.468 |
| C1' |
H1' |
1.103 |
1.081 |
| C1 |
C2 |
1.366 |
1.399 |
| C1 |
C6 |
1.397 |
1.399 |
| C2 |
C3 |
1.365 |
1.371 |
| C2 |
H2 |
1.103 |
1.080 |
| C3 |
C4 |
1.375 |
1.390 |
| C3 |
H3 |
1.102 |
1.081 |
| C4 |
C5 |
1.383 |
1.391 |
| C4 |
O4 |
1.246 |
1.357 |
| C5 |
C6 |
1.382 |
1.370 |
| C5 |
H5 |
1.103 |
1.081 |
| C6 |
H6 |
1.104 |
1.080 |
| O4 |
HO4 |
0.950 |
0.966 |
Bond Angles for HBA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1' |
C1' |
C1 |
117.4 |
120.1 |
| O1' |
C1' |
H1' |
116.3 |
120.0 |
| C1 |
C1' |
H1' |
126.3 |
120.0 |
| C1' |
C1 |
C2 |
116.6 |
120.1 |
| C1' |
C1 |
C6 |
123.1 |
120.1 |
| C2 |
C1 |
C6 |
120.1 |
119.8 |
| C1 |
C2 |
C3 |
121.0 |
119.9 |
| C1 |
C2 |
H2 |
119.5 |
120.1 |
| C1 |
C6 |
C5 |
119.0 |
119.9 |
| C1 |
C6 |
H6 |
121.0 |
120.1 |
| C3 |
C2 |
H2 |
119.5 |
120.0 |
| C2 |
C3 |
C4 |
119.3 |
120.1 |
| C2 |
C3 |
H3 |
120.0 |
119.9 |
| C4 |
C3 |
H3 |
120.7 |
119.9 |
| C3 |
C4 |
C5 |
120.9 |
120.2 |
| C3 |
C4 |
O4 |
115.9 |
119.9 |
| C5 |
C4 |
O4 |
122.9 |
120.0 |
| C4 |
C5 |
C6 |
119.6 |
120.1 |
| C4 |
C5 |
H5 |
120.3 |
119.9 |
| C4 |
O4 |
HO4 |
115.9 |
106.8 |
| C6 |
C5 |
H5 |
120.1 |
119.9 |
| C5 |
C6 |
H6 |
120.0 |
120.0 |
Torsion Angles for HBA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C1' |
O1' |
H1' |
180.0 |
180.1 |
| O1' |
C1' |
C1 |
C2 |
183.5 |
180.0 |
| O1' |
C1' |
C1 |
C6 |
359.1 |
360.0 |
| O1' |
C1' |
C1 |
H1' |
180.0 |
179.9 |
| C2 |
C1 |
C1' |
C6 |
184.4 |
180.0 |
| C1' |
C1 |
C2 |
C3 |
174.5 |
180.0 |
| C1' |
C1 |
C2 |
H2 |
354.4 |
360.0 |
| C1' |
C1 |
C6 |
C5 |
185.0 |
179.7 |
| C1' |
C1 |
C6 |
H6 |
5.0 |
359.9 |
| O1' |
C1' |
H1' |
C1 |
180.0 |
180.1 |
| H1' |
C1' |
C1 |
C2 |
3.5 |
0.0 |
| H1' |
C1' |
C1 |
C6 |
179.1 |
180.0 |
| C2 |
C1 |
C1' |
H1' |
3.5 |
0.0 |
| C1' |
C1 |
C2 |
C6 |
175.7 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
0.4 |
359.7 |
| C2 |
C1 |
C6 |
H6 |
180.4 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.9 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
180.9 |
180.0 |
| C6 |
C1 |
C1' |
H1' |
179.1 |
180.0 |
| C1' |
C1 |
C6 |
C2 |
184.6 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
358.8 |
0.0 |
| C6 |
C1 |
C2 |
H2 |
178.7 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.8 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
180.8 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.8 |
| C3 |
C2 |
C1 |
C6 |
358.8 |
0.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.3 |
0.2 |
| C2 |
C3 |
C4 |
O4 |
185.9 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
178.7 |
180.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
180.9 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
0.9 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
180.9 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
O4 |
174.4 |
180.2 |
| C3 |
C4 |
C5 |
C6 |
358.9 |
359.5 |
| C3 |
C4 |
C5 |
H5 |
178.9 |
180.0 |
| C3 |
C4 |
O4 |
HO4 |
180.0 |
90.0 |
| H3 |
C3 |
C2 |
H2 |
0.9 |
0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
180.3 |
180.3 |
| H3 |
C3 |
C4 |
O4 |
5.9 |
0.1 |
| C1 |
C6 |
C5 |
C4 |
0.8 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
180.3 |
180.3 |
| C3 |
C4 |
C5 |
O4 |
186.0 |
179.8 |
| C5 |
C4 |
O4 |
HO4 |
5.7 |
269.8 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.5 |
| C4 |
C5 |
C6 |
H6 |
180.8 |
180.3 |
| O4 |
C4 |
C3 |
H3 |
5.9 |
0.1 |
| C3 |
C4 |
O4 |
C5 |
174.3 |
180.2 |
| O4 |
C4 |
C5 |
C6 |
172.9 |
179.7 |
| O4 |
C4 |
C5 |
H5 |
352.9 |
0.2 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
| C6 |
C5 |
C4 |
O4 |
172.9 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.5 |
| H5 |
C5 |
C4 |
O4 |
352.9 |
0.2 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.5 |
| H5 |
C5 |
C6 |
H6 |
0.8 |
359.8 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
| H6 |
C6 |
C5 |
H5 |
0.8 |
359.8 |