PDB Chemical Component GVE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GVE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
C1 |
1.453 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| C1 |
CB |
1.536 |
1.531 |
| C1 |
HA1 |
1.100 |
1.090 |
| C1 |
HA2 |
1.100 |
1.090 |
| CB |
CG |
1.549 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CG |
C |
1.524 |
1.507 |
| CG |
HG1 |
1.100 |
1.090 |
| CG |
HG2 |
1.101 |
1.090 |
| C |
OXT |
1.418 |
1.342 |
| C |
O |
1.254 |
1.208 |
| OXT |
CH3 |
1.456 |
1.452 |
| CH3 |
HH31 |
1.100 |
1.090 |
| CH3 |
HH32 |
1.100 |
1.090 |
| CH3 |
HH33 |
1.100 |
1.090 |
Bond Angles for GVE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
N |
H |
109.5 |
111.0 |
| C1 |
N |
H2 |
109.5 |
110.9 |
| N |
C1 |
CB |
110.4 |
109.4 |
| N |
C1 |
HA1 |
109.1 |
109.5 |
| N |
C1 |
HA2 |
109.2 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
C1 |
HA1 |
109.2 |
109.4 |
| CB |
C1 |
HA2 |
109.1 |
109.5 |
| C1 |
CB |
CG |
111.7 |
109.5 |
| C1 |
CB |
HB1 |
108.8 |
109.4 |
| C1 |
CB |
HB2 |
108.7 |
109.5 |
| HA1 |
C1 |
HA2 |
109.8 |
109.5 |
| CG |
CB |
HB1 |
108.7 |
109.5 |
| CG |
CB |
HB2 |
108.7 |
109.5 |
| CB |
CG |
C |
117.3 |
109.5 |
| CB |
CG |
HG1 |
106.9 |
109.4 |
| CB |
CG |
HG2 |
106.9 |
109.5 |
| HB1 |
CB |
HB2 |
110.2 |
109.5 |
| C |
CG |
HG1 |
106.9 |
109.4 |
| C |
CG |
HG2 |
106.9 |
109.5 |
| CG |
C |
OXT |
118.5 |
120.0 |
| CG |
C |
O |
119.7 |
120.0 |
| HG1 |
CG |
HG2 |
111.9 |
109.5 |
| OXT |
C |
O |
121.8 |
120.1 |
| C |
OXT |
CH3 |
111.5 |
117.0 |
| OXT |
CH3 |
HH31 |
109.5 |
109.5 |
| OXT |
CH3 |
HH32 |
109.4 |
109.5 |
| OXT |
CH3 |
HH33 |
109.5 |
109.5 |
| HH31 |
CH3 |
HH32 |
109.5 |
109.5 |
| HH31 |
CH3 |
HH33 |
109.5 |
109.5 |
| HH32 |
CH3 |
HH33 |
109.5 |
109.4 |
Torsion Angles for GVE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
C1 |
H2 |
240.0 |
236.1 |
| CB |
C1 |
N |
HA1 |
240.0 |
240.1 |
| CB |
C1 |
N |
HA2 |
120.0 |
120.0 |
| N |
C1 |
CB |
CG |
284.5 |
180.0 |
| N |
C1 |
CB |
HB1 |
44.5 |
300.0 |
| N |
C1 |
CB |
HB2 |
164.5 |
60.0 |
| HA1 |
C1 |
N |
HA2 |
240.0 |
239.9 |
| C1 |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
C1 |
CB |
180.0 |
56.1 |
| H |
N |
C1 |
HA1 |
300.0 |
176.0 |
| H |
N |
C1 |
HA2 |
60.0 |
296.1 |
| C1 |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
C1 |
CB |
300.0 |
180.0 |
| H2 |
N |
C1 |
HA1 |
60.0 |
299.9 |
| H2 |
N |
C1 |
HA2 |
180.0 |
60.0 |
| CB |
C1 |
N |
H |
180.0 |
56.1 |
| CB |
C1 |
N |
H2 |
300.0 |
180.0 |
| N |
C1 |
CB |
HA1 |
120.0 |
120.0 |
| N |
C1 |
CB |
HA2 |
240.0 |
240.0 |
| HA1 |
C1 |
CB |
HA2 |
120.0 |
120.0 |
| CG |
CB |
C1 |
HB1 |
240.0 |
240.0 |
| CG |
CB |
C1 |
HB2 |
120.0 |
120.0 |
| C1 |
CB |
CG |
C |
291.1 |
180.0 |
| C1 |
CB |
CG |
HG1 |
51.1 |
300.0 |
| C1 |
CB |
CG |
HG2 |
171.1 |
60.0 |
| HB1 |
CB |
C1 |
HB2 |
240.0 |
240.0 |
| HA1 |
C1 |
N |
H |
300.0 |
176.0 |
| HA1 |
C1 |
N |
H2 |
60.0 |
299.9 |
| N |
C1 |
HA1 |
CB |
239.2 |
240.1 |
| N |
C1 |
HA1 |
HA2 |
119.6 |
120.1 |
| CB |
C1 |
HA1 |
HA2 |
240.4 |
240.0 |
| HA1 |
C1 |
CB |
CG |
164.5 |
60.0 |
| HA1 |
C1 |
CB |
HB1 |
284.5 |
180.0 |
| HA1 |
C1 |
CB |
HB2 |
44.5 |
300.0 |
| HA2 |
C1 |
N |
H |
60.0 |
296.1 |
| HA2 |
C1 |
N |
H2 |
180.0 |
60.0 |
| N |
C1 |
HA2 |
CB |
120.8 |
120.0 |
| N |
C1 |
HA2 |
HA1 |
240.4 |
239.9 |
| CB |
C1 |
HA2 |
HA1 |
119.6 |
119.9 |
| HA2 |
C1 |
CB |
CG |
44.5 |
300.0 |
| HA2 |
C1 |
CB |
HB1 |
164.5 |
60.0 |
| HA2 |
C1 |
CB |
HB2 |
284.5 |
180.0 |
| CG |
CB |
C1 |
HA1 |
164.5 |
60.0 |
| CG |
CB |
C1 |
HA2 |
44.5 |
300.0 |
| C1 |
CB |
CG |
HB1 |
120.0 |
119.9 |
| C1 |
CB |
CG |
HB2 |
240.0 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
120.0 |
120.1 |
| C |
CG |
CB |
HG1 |
240.0 |
240.1 |
| C |
CG |
CB |
HG2 |
120.0 |
120.1 |
| CB |
CG |
C |
OXT |
235.2 |
180.0 |
| CB |
CG |
C |
O |
56.9 |
359.9 |
| HG1 |
CG |
CB |
HG2 |
240.0 |
240.0 |
| HB1 |
CB |
C1 |
HA1 |
284.5 |
180.0 |
| HB1 |
CB |
C1 |
HA2 |
164.5 |
60.0 |
| C1 |
CB |
HB1 |
CG |
238.2 |
240.1 |
| C1 |
CB |
HB1 |
HB2 |
119.1 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
240.9 |
239.9 |
| HB1 |
CB |
CG |
C |
171.1 |
60.1 |
| HB1 |
CB |
CG |
HG1 |
291.1 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
51.1 |
300.0 |
| HB2 |
CB |
C1 |
HA1 |
44.5 |
300.0 |
| HB2 |
CB |
C1 |
HA2 |
284.5 |
180.0 |
| C1 |
CB |
HB2 |
CG |
121.8 |
120.0 |
| C1 |
CB |
HB2 |
HB1 |
240.9 |
240.1 |
| CG |
CB |
HB2 |
HB1 |
119.1 |
120.0 |
| HB2 |
CB |
CG |
C |
51.1 |
300.0 |
| HB2 |
CB |
CG |
HG1 |
171.1 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
291.1 |
180.0 |
| C |
CG |
CB |
HB1 |
171.1 |
60.1 |
| C |
CG |
CB |
HB2 |
51.1 |
300.0 |
| CB |
CG |
C |
HG1 |
120.0 |
119.9 |
| CB |
CG |
C |
HG2 |
240.0 |
239.9 |
| HG1 |
CG |
C |
HG2 |
120.0 |
120.0 |
| OXT |
C |
CG |
O |
178.4 |
180.1 |
| CG |
C |
OXT |
CH3 |
184.6 |
180.0 |
| HG1 |
CG |
CB |
HB1 |
291.1 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
171.1 |
60.0 |
| CB |
CG |
HG1 |
C |
233.5 |
240.0 |
| CB |
CG |
HG1 |
HG2 |
116.8 |
120.0 |
| C |
CG |
HG1 |
HG2 |
243.2 |
240.0 |
| HG1 |
CG |
C |
OXT |
115.2 |
60.1 |
| HG1 |
CG |
C |
O |
296.9 |
240.0 |
| HG2 |
CG |
CB |
HB1 |
51.1 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
291.1 |
180.0 |
| CB |
CG |
HG2 |
C |
126.5 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
243.2 |
240.0 |
| C |
CG |
HG2 |
HG1 |
116.8 |
120.0 |
| HG2 |
CG |
C |
OXT |
355.2 |
300.1 |
| HG2 |
CG |
C |
O |
176.9 |
120.0 |
| OXT |
C |
CG |
HG1 |
115.2 |
60.1 |
| OXT |
C |
CG |
HG2 |
355.2 |
300.1 |
| CG |
C |
OXT |
O |
181.7 |
179.9 |
| C |
OXT |
CH3 |
HH31 |
180.0 |
300.0 |
| C |
OXT |
CH3 |
HH32 |
300.0 |
60.0 |
| C |
OXT |
CH3 |
HH33 |
60.0 |
180.0 |
| O |
C |
CG |
HG1 |
296.9 |
240.0 |
| O |
C |
CG |
HG2 |
176.9 |
120.0 |
| CG |
C |
O |
OXT |
178.3 |
180.1 |
| O |
C |
OXT |
CH3 |
2.9 |
0.0 |
| CH3 |
OXT |
C |
O |
2.9 |
0.0 |
| HH31 |
CH3 |
OXT |
HH32 |
240.0 |
240.0 |
| HH31 |
CH3 |
OXT |
HH33 |
120.0 |
120.0 |
| HH32 |
CH3 |
OXT |
HH33 |
240.0 |
240.1 |
| OXT |
CH3 |
HH31 |
HH32 |
120.0 |
120.0 |
| OXT |
CH3 |
HH31 |
HH33 |
240.0 |
240.0 |
| HH32 |
CH3 |
HH31 |
HH33 |
120.0 |
120.0 |
| OXT |
CH3 |
HH32 |
HH31 |
239.9 |
240.0 |
| OXT |
CH3 |
HH32 |
HH33 |
120.0 |
120.0 |
| HH31 |
CH3 |
HH32 |
HH33 |
240.0 |
240.0 |
| OXT |
CH3 |
HH33 |
HH31 |
120.1 |
120.0 |
| OXT |
CH3 |
HH33 |
HH32 |
240.0 |
240.0 |
| HH31 |
CH3 |
HH33 |
HH32 |
120.0 |
120.0 |