PDB Chemical Component GPJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GPJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P1	O1	1.473	1.480
P1	O2	1.462	1.611
P1	O3	1.525	1.610
P1	C1	1.752	1.824
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	C3	1.276	1.342
O4	HO4	0.950	0.966
O5	C3	1.224	1.209
C1	N1	1.454	1.469
C1	H11	1.115	1.089
C1	H12	1.115	1.090
C2	C3	1.523	1.508
C2	N1	1.503	1.469
C2	H21	1.115	1.090
C2	H22	1.116	1.089
N1	HN	1.020	1.008
N1	HN11	1.020	1.010

Bond Angles for GPJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	P1	O2	114.5	109.5
O1	P1	O3	112.1	109.5
O1	P1	C1	108.6	109.5
O2	P1	O3	111.4	109.4
O2	P1	C1	101.2	109.4
P1	O2	HO2	114.5	106.9
O3	P1	C1	108.4	109.5
P1	O3	HO3	112.0	106.8
P1	C1	N1	109.7	109.5
P1	C1	H11	112.1	109.5
P1	C1	H12	112.1	109.4
C3	O4	HO4	125.7	120.0
O4	C3	O5	125.7	120.0
O4	C3	C2	118.9	120.0
O5	C3	C2	115.4	120.0
N1	C1	H11	112.1	109.5
N1	C1	H12	112.2	109.5
C1	N1	C2	118.8	109.4
C1	N1	HN	108.8	109.5
C1	N1	HN11	108.9	109.5
H11	C1	H12	98.2	109.5
C3	C2	N1	109.9	109.4
C3	C2	H21	112.1	109.4
C3	C2	H22	112.1	109.5
N1	C2	H21	112.1	109.4
N1	C2	H22	112.1	109.5
C2	N1	HN	108.9	109.5
C2	N1	HN11	108.9	109.5
H21	C2	H22	98.3	109.5
HN	N1	HN11	101.2	109.5

Torsion Angles for GPJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	P1	O1	O3	231.9	120.0
O2	P1	O1	C1	112.2	240.0
O1	P1	O2	HO2	180.0	180.0
O3	P1	O1	C1	240.4	120.0
O1	P1	O3	HO3	180.0	60.0
O1	P1	C1	N1	330.1	305.0
O1	P1	C1	H11	95.4	185.0
O1	P1	C1	H12	204.8	65.0
O1	P1	O2	O3	128.5	240.0
O1	P1	O2	C1	243.4	120.0
O3	P1	O2	C1	115.0	240.0
O2	P1	O3	HO3	309.8	300.0
O2	P1	C1	N1	209.3	65.0
O2	P1	C1	H11	334.6	305.0
O2	P1	C1	H12	84.0	185.0
O1	P1	O3	O2	230.3	120.0
O1	P1	O3	C1	119.8	240.0
O2	P1	O3	C1	249.5	120.0
O3	P1	O2	HO2	51.5	300.0
O3	P1	C1	N1	92.1	185.0
O3	P1	C1	H11	217.4	65.0
O3	P1	C1	H12	326.8	304.9
O1	P1	C1	O2	120.8	240.0
O1	P1	C1	O3	238.1	120.0
O2	P1	C1	O3	117.2	240.0
C1	P1	O2	HO2	296.6	60.0
C1	P1	O3	HO3	60.2	180.1
N1	C1	P1	H11	234.7	120.0
N1	C1	P1	H12	125.3	240.0
P1	C1	N1	C2	176.0	179.9
P1	C1	N1	HN	301.3	300.0
P1	C1	N1	HN11	50.8	60.0
H11	C1	P1	H12	250.6	120.1
HO2	O2	P1	O3	51.5	300.0
HO2	O2	P1	C1	296.6	60.0
HO3	O3	P1	C1	60.2	180.1
O5	C3	O4	C2	180.9	179.9
O4	C3	C2	N1	5.3	180.0
O4	C3	C2	H21	130.6	299.9
O4	C3	C2	H22	240.0	60.0
HO4	O4	C3	O5	180.0	0.0
HO4	O4	C3	C2	359.1	180.1
O5	C3	O4	HO4	180.0	0.0
O4	C3	O5	C2	179.1	180.1
O5	C3	C2	N1	184.5	0.1
O5	C3	C2	H21	309.8	120.0
O5	C3	C2	H22	59.2	240.0
P1	C1	N1	H11	125.3	240.0
P1	C1	N1	H12	234.7	119.9
H11	C1	N1	H12	109.5	239.9
C3	C2	N1	C1	181.7	180.0
C1	N1	C2	H21	56.4	60.1
C1	N1	C2	H22	307.0	300.0
C2	N1	C1	HN	234.8	240.0
C2	N1	C1	HN11	125.3	119.9
HN	N1	C1	HN11	250.5	240.0
P1	C1	H11	N1	236.1	120.0
P1	C1	H11	H12	118.0	240.0
N1	C1	H11	H12	241.9	120.0
H11	C1	N1	C2	50.8	299.9
H11	C1	N1	HN	176.0	60.0
H11	C1	N1	HN11	285.5	180.0
P1	C1	H12	N1	123.9	240.1
P1	C1	H12	H11	242.0	120.0
N1	C1	H12	H11	118.1	240.0
H12	C1	N1	C2	301.3	60.0
H12	C1	N1	HN	66.5	180.1
H12	C1	N1	HN11	176.1	300.1
C2	C3	O4	HO4	359.1	180.1
O4	C3	C2	O5	180.8	179.9
C1	N1	C2	C3	181.7	180.0
N1	C2	C3	H21	234.7	240.1
N1	C2	C3	H22	125.3	120.1
C3	C2	N1	HN	56.5	59.9
C3	C2	N1	HN11	307.0	299.9
H21	C2	C3	H22	250.6	240.0
C2	N1	C1	H11	50.8	299.9
C2	N1	C1	H12	301.3	60.0
C1	N1	C2	HN	125.2	120.0
C1	N1	C2	HN11	234.8	240.1
C3	C2	N1	H21	125.3	119.9
C3	C2	N1	H22	234.7	240.0
H21	C2	N1	H22	109.4	120.1
HN	N1	C2	HN11	109.5	120.0
C3	C2	H21	N1	235.9	240.1
C3	C2	H21	H22	118.0	120.0
N1	C2	H21	H22	242.1	239.9
H21	C2	N1	HN	291.2	300.0
H21	C2	N1	HN11	181.7	180.0
C3	C2	H22	N1	124.1	120.0
C3	C2	H22	H21	242.0	240.0
N1	C2	H22	H21	117.9	120.0
H22	C2	N1	HN	181.8	179.9
H22	C2	N1	HN11	72.3	59.9
HN	N1	C1	H11	176.0	60.0
HN	N1	C1	H12	66.5	180.1
C1	N1	HN	C2	229.2	240.0
C1	N1	HN	HN11	114.6	120.0
HN	N1	C2	H21	291.2	300.0
HN	N1	C2	H22	181.8	179.9
C2	N1	HN	HN11	245.4	240.0
HN11	N1	C1	H11	285.5	180.0
HN11	N1	C1	H12	176.1	300.1
C1	N1	HN11	C2	130.8	119.9
C1	N1	HN11	HN	245.4	240.0
HN11	N1	C2	H21	181.7	180.0
HN11	N1	C2	H22	72.3	59.9
C2	N1	HN11	HN	114.6	120.1