PDB Chemical Component GLP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GLP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.515	1.530
C1	O1	1.407	1.428
C1	O5	1.392	1.427
C1	H1	1.114	1.090
C2	C3	1.519	1.531
C2	N2	1.437	1.469
C2	H2	1.114	1.090
C3	C4	1.514	1.533
C3	O3	1.442	1.429
C3	H3	1.115	1.090
C4	C5	1.543	1.530
C4	O4	1.413	1.429
C4	H4	1.115	1.090
C5	C6	1.539	1.529
C5	O5	1.414	1.425
C5	H5	1.115	1.090
C6	O6	1.449	1.429
C6	H61	1.114	1.089
C6	H62	1.115	1.090
O1	HO1	0.949	0.967
N2	HN21	1.021	1.009
N2	HN22	1.020	1.009
O3	HO3	0.950	0.968
O4	HO4	0.949	0.967
O6	P	1.622	1.609
P	O1P	1.482	1.480
P	O2P	1.467	1.610
P	O3P	1.516	1.609
O2P	HOP2	0.949	0.967
O3P	HOP3	0.949	0.966

Bond Angles for GLP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	109.1	109.4
C2	C1	O5	110.5	109.8
C2	C1	H1	108.1	109.4
C1	C2	C3	110.0	109.1
C1	C2	N2	109.8	109.6
C1	C2	H2	109.5	109.5
O1	C1	O5	106.5	109.4
O1	C1	H1	112.0	109.4
C1	O1	HO1	109.1	106.8
O5	C1	H1	110.7	109.5
C1	O5	C5	120.2	107.6
C3	C2	N2	111.1	109.6
C3	C2	H2	108.0	109.5
C2	C3	C4	111.4	108.7
C2	C3	O3	108.4	109.9
C2	C3	H3	108.3	109.5
N2	C2	H2	108.3	109.5
C2	N2	HN21	109.8	106.7
C2	N2	HN22	112.1	106.7
C4	C3	O3	107.7	109.6
C4	C3	H3	109.1	109.5
C3	C4	C5	108.8	109.1
C3	C4	O4	113.5	109.7
C3	C4	H4	106.4	109.4
O3	C3	H3	112.0	109.6
C3	O3	HO3	108.4	106.7
C5	C4	O4	107.0	109.6
C5	C4	H4	113.0	109.5
C4	C5	C6	108.5	109.4
C4	C5	O5	110.7	109.8
C4	C5	H5	108.5	109.3
O4	C4	H4	108.2	109.5
C4	O4	HO4	113.6	106.8
C6	C5	O5	107.1	109.4
C6	C5	H5	112.2	109.4
C5	C6	O6	108.5	109.5
C5	C6	H61	112.5	109.5
C5	C6	H62	112.5	109.5
O5	C5	H5	109.9	109.5
O6	C6	H61	112.6	109.5
O6	C6	H62	112.6	109.4
C6	O6	P	121.4	106.8
H61	C6	H62	97.9	109.5
HN21	N2	HN22	112.0	106.7
O6	P	O1P	107.6	109.4
O6	P	O2P	104.3	109.5
O6	P	O3P	108.8	109.5
O1P	P	O2P	116.3	109.4
O1P	P	O3P	106.1	109.5
O2P	P	O3P	113.4	109.5
P	O2P	HOP2	104.3	106.9
P	O3P	HOP3	108.8	106.8

Torsion Angles for GLP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	243.3	240.0
O1	C1	C2	H1	122.0	119.8
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	238.7	239.9
C2	C1	O5	C5	306.9	292.4
C3	C2	C1	N2	237.4	240.1
C3	C2	C1	H2	118.6	119.9
C1	C2	C3	C4	303.7	306.5
C1	C2	C3	O3	185.3	186.5
C1	C2	C3	H3	63.6	66.1
N2	C2	C1	H2	241.2	239.8
C1	C2	N2	HN21	180.0	60.1
C1	C2	N2	HN22	54.8	173.9
C2	C1	O1	O5	119.3	120.3
C2	C1	O1	H1	240.4	240.2
O1	C1	C2	C3	295.1	301.2
O1	C1	C2	N2	57.6	61.1
O1	C1	C2	H2	176.4	181.3
O5	C1	O1	H1	121.1	119.9
O1	C1	O5	C5	65.3	52.5
C2	C1	O5	O1	241.7	240.0
C2	C1	O5	H1	119.7	120.1
O5	C1	C2	C3	51.8	61.2
O5	C1	C2	N2	174.4	181.1
O5	C1	C2	H2	293.1	301.3
O1	C1	O5	H1	238.0	240.1
O5	C1	O1	HO1	60.8	59.8
C4	C5	O5	C1	52.7	67.6
C6	C5	O5	C1	170.8	187.6
C1	O5	C5	H5	292.8	307.5
C2	C1	H1	O1	120.2	119.8
C2	C1	H1	O5	238.8	239.7
H1	C1	C2	C3	173.0	181.3
H1	C1	C2	N2	295.6	301.3
H1	C1	C2	H2	54.4	61.4
O1	C1	H1	O5	118.7	119.8
H1	C1	O1	HO1	299.6	299.9
H1	C1	O5	C5	187.2	172.3
C3	C2	C1	O1	295.1	301.2
C3	C2	C1	O5	51.8	61.2
C3	C2	C1	H1	173.0	181.3
C1	C2	C3	N2	121.8	119.9
C1	C2	C3	H2	240.5	240.1
N2	C2	C3	H2	118.7	120.2
C3	C2	N2	HN21	301.9	179.8
C3	C2	N2	HN22	176.7	293.6
C4	C3	C2	O3	118.4	120.0
C4	C3	C2	H3	240.0	240.4
C2	C3	C4	C5	55.3	53.5
C2	C3	C4	O4	174.3	173.6
C2	C3	C4	H4	293.2	293.7
O3	C3	C2	H3	121.7	120.4
C2	C3	O3	HO3	180.0	299.4
N2	C2	C1	O1	57.6	61.1
N2	C2	C1	O5	174.4	181.1
N2	C2	C1	H1	295.6	301.3
C1	C2	N2	C3	238.1	240.3
C1	C2	N2	H2	119.5	120.2
C3	C2	N2	H2	241.5	239.8
N2	C2	C3	C4	181.9	186.5
N2	C2	C3	O3	63.5	66.6
N2	C2	C3	H3	301.8	306.1
HN21	N2	C2	HN22	125.2	246.2
H2	C2	C1	O1	176.4	181.3
H2	C2	C1	O5	293.1	301.3
H2	C2	C1	H1	54.4	61.4
C1	C2	H2	C3	119.9	119.6
C1	C2	H2	N2	240.3	239.8
C3	C2	H2	N2	120.5	120.2
H2	C2	C3	C4	63.2	66.4
H2	C2	C3	O3	304.8	306.4
H2	C2	C3	H3	183.1	186.0
H2	C2	N2	HN21	60.5	300.0
H2	C2	N2	HN22	295.2	53.7
C4	C3	C2	N2	181.9	186.5
C4	C3	C2	H2	63.2	66.4
C2	C3	C4	O3	241.2	239.8
C2	C3	C4	H3	119.5	119.6
O3	C3	C4	H3	238.3	239.7
C4	C3	O3	HO3	59.3	180.0
C5	C4	C3	O4	241.0	239.9
C5	C4	C3	H4	122.1	119.8
C3	C4	C5	C6	192.2	178.8
C3	C4	C5	O5	309.4	298.9
C3	C4	C5	H5	70.1	59.0
O4	C4	C3	H4	241.1	239.9
C3	C4	O4	HO4	180.0	60.2
O3	C3	C2	N2	63.5	66.6
O3	C3	C2	H2	304.8	306.4
C2	C3	O3	C4	120.7	119.4
C2	C3	O3	H3	240.6	239.6
C4	C3	O3	H3	119.9	120.2
O3	C3	C4	C5	174.1	173.7
O3	C3	C4	O4	293.1	293.7
O3	C3	C4	H4	52.0	53.8
H3	C3	C2	N2	301.8	306.1
H3	C3	C2	H2	183.1	186.0
C2	C3	H3	C4	238.6	240.9
C2	C3	H3	O3	119.5	120.6
C4	C3	H3	O3	240.9	239.7
H3	C3	C4	C5	295.8	293.9
H3	C3	C4	O4	54.8	54.0
H3	C3	C4	H4	173.7	174.1
H3	C3	O3	HO3	299.4	59.7
C1	O5	C5	C4	52.7	67.6
C5	C4	C3	O3	174.1	173.7
C5	C4	C3	H3	295.8	293.9
C3	C4	C5	O4	123.0	120.1
C3	C4	C5	H4	242.1	240.2
O4	C4	C5	H4	119.0	120.1
C5	C4	O4	HO4	300.1	180.0
C6	C5	C4	O5	242.8	239.9
C6	C5	C4	H5	122.1	119.8
C4	C5	C6	O6	69.2	180.3
C4	C5	C6	H61	194.5	300.4
C4	C5	C6	H62	304.0	60.4
O5	C5	C4	H5	239.3	239.8
O4	C4	C3	O3	293.1	293.7
O4	C4	C3	H3	54.8	54.0
C3	C4	O4	C5	239.9	240.2
C3	C4	O4	H4	117.8	120.1
C5	C4	O4	H4	237.9	239.9
O4	C4	C5	C6	69.2	58.6
O4	C4	C5	O5	186.3	178.7
O4	C4	C5	H5	307.1	298.9
H4	C4	C3	O3	52.0	53.8
H4	C4	C3	H3	173.7	174.1
C3	C4	H4	C5	119.4	119.6
C3	C4	H4	O4	237.7	239.7
C5	C4	H4	O4	118.3	120.2
H4	C4	C5	C6	310.1	298.5
H4	C4	C5	O5	67.3	58.6
H4	C4	C5	H5	188.0	178.8
H4	C4	O4	HO4	62.2	300.1
C1	O5	C5	C6	170.8	187.6
C6	C5	C4	O4	69.2	58.6
C6	C5	C4	H4	310.1	298.5
C4	C5	C6	O5	119.5	120.3
C4	C5	C6	H5	240.2	240.3
O5	C5	C6	H5	120.7	119.9
O6	C6	C5	H61	234.7	240.0
O6	C6	C5	H62	125.2	120.0
C5	C6	O6	P	213.8	180.0
H61	C6	C5	H62	250.5	240.0
C5	O5	C1	H1	187.2	172.3
O5	C5	C4	O4	186.3	178.7
O5	C5	C4	H4	67.3	58.6
C4	C5	O5	C6	242.0	239.9
C4	C5	O5	H5	119.9	120.1
C6	C5	O5	H5	237.9	240.1
O5	C5	C6	O6	309.7	60.0
O5	C5	C6	H61	75.0	180.0
O5	C5	C6	H62	184.5	300.0
H5	C5	C4	O4	307.1	298.9
H5	C5	C4	H4	188.0	178.8
C4	C5	H5	C6	119.8	119.7
C4	C5	H5	O5	238.8	239.6
C6	C5	H5	O5	119.0	119.9
H5	C5	C6	O6	189.1	300.1
H5	C5	C6	H61	314.4	60.1
H5	C5	C6	H62	63.8	180.1
O6	C6	C5	O5	309.7	60.0
O6	C6	C5	H5	189.1	300.1
C5	C6	O6	H61	125.3	120.0
C5	C6	O6	H62	234.8	240.0
H61	C6	O6	H62	109.5	120.0
C6	O6	P	O1P	297.5	60.1
C6	O6	P	O2P	173.4	180.0
C6	O6	P	O3P	52.1	300.0
H61	C6	C5	O5	75.0	180.0
H61	C6	C5	H5	314.4	60.1
C5	C6	H61	O6	237.0	240.0
C5	C6	H61	H62	118.5	120.0
O6	C6	H61	H62	241.5	240.1
H61	C6	O6	P	88.5	59.9
H62	C6	C5	O5	184.5	300.0
H62	C6	C5	H5	63.8	180.1
C5	C6	H62	O6	123.0	120.0
C5	C6	H62	H61	241.5	240.0
O6	C6	H62	H61	118.6	120.0
H62	C6	O6	P	339.0	300.0
HO1	O1	C1	O5	60.8	59.8
HO1	O1	C1	H1	299.6	299.9
HN21	N2	C2	H2	60.5	300.0
C2	N2	HN21	HN22	234.7	113.8
HN22	N2	C2	H2	295.2	53.7
C2	N2	HN22	HN21	124.0	246.2
HO3	O3	C3	H3	299.4	59.7
HO4	O4	C4	H4	62.2	300.1
P	O6	C6	H61	88.5	59.9
P	O6	C6	H62	339.0	300.0
O1P	P	O6	O2P	124.1	240.1
O1P	P	O6	O3P	245.5	120.1
O2P	P	O6	O3P	121.3	240.0
O6	P	O2P	HOP2	180.1	180.1
O6	P	O3P	HOP3	180.0	300.0
O6	P	O1P	O2P	243.5	120.0
O6	P	O1P	O3P	116.3	240.0
O2P	P	O1P	O3P	232.8	120.0
O1P	P	O2P	HOP2	61.7	300.0
O1P	P	O3P	HOP3	295.5	180.0
O6	P	O2P	O1P	118.3	240.1
O6	P	O2P	O3P	241.8	120.1
O1P	P	O2P	O3P	123.5	240.0
O2P	P	O3P	HOP3	64.4	60.0
O6	P	O3P	O1P	244.5	120.0
O6	P	O3P	O2P	115.6	240.0
O1P	P	O3P	O2P	231.1	119.9
O3P	P	O2P	HOP2	298.3	60.0
HOP2	O2P	P	O3P	298.3	60.0