PDB Chemical Component GLB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GLB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.544 |
1.531 |
C1 |
O1 |
1.386 |
1.429 |
C1 |
O5 |
1.450 |
1.425 |
C1 |
H1 |
1.115 |
1.090 |
C2 |
C3 |
1.384 |
1.532 |
C2 |
O2 |
1.437 |
1.428 |
C2 |
H2 |
1.115 |
1.090 |
C3 |
C4 |
1.590 |
1.532 |
C3 |
O3 |
1.496 |
1.430 |
C3 |
H3 |
1.115 |
1.090 |
C4 |
C5 |
1.527 |
1.531 |
C4 |
O4 |
1.443 |
1.427 |
C4 |
H4 |
1.116 |
1.090 |
C5 |
C6 |
1.522 |
1.529 |
C5 |
O5 |
1.448 |
1.425 |
C5 |
H5 |
1.116 |
1.090 |
C6 |
O6 |
1.435 |
1.429 |
C6 |
H61 |
1.116 |
1.089 |
C6 |
H62 |
1.115 |
1.091 |
O1 |
HO1 |
0.950 |
0.967 |
O2 |
HO2 |
0.951 |
0.967 |
O3 |
HO3 |
0.951 |
0.967 |
O4 |
HO4 |
0.950 |
0.966 |
O6 |
HO6 |
0.950 |
0.967 |
Bond Angles for GLB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
109.1 |
109.4 |
C2 |
C1 |
O5 |
106.3 |
109.8 |
C2 |
C1 |
H1 |
110.3 |
109.4 |
C1 |
C2 |
C3 |
105.7 |
109.0 |
C1 |
C2 |
O2 |
110.0 |
109.6 |
C1 |
C2 |
H2 |
111.2 |
109.5 |
O1 |
C1 |
O5 |
104.8 |
109.5 |
O1 |
C1 |
H1 |
111.8 |
109.4 |
C1 |
O1 |
HO1 |
109.0 |
106.8 |
O5 |
C1 |
H1 |
114.2 |
109.4 |
C1 |
O5 |
C5 |
109.2 |
107.7 |
C3 |
C2 |
O2 |
108.1 |
109.7 |
C3 |
C2 |
H2 |
112.9 |
109.5 |
C2 |
C3 |
C4 |
115.4 |
108.6 |
C2 |
C3 |
O3 |
118.1 |
109.6 |
C2 |
C3 |
H3 |
96.8 |
109.6 |
O2 |
C2 |
H2 |
108.8 |
109.5 |
C2 |
O2 |
HO2 |
110.0 |
106.8 |
C4 |
C3 |
O3 |
103.9 |
109.7 |
C4 |
C3 |
H3 |
113.0 |
109.7 |
C3 |
C4 |
C5 |
106.9 |
109.0 |
C3 |
C4 |
O4 |
108.3 |
109.6 |
C3 |
C4 |
H4 |
112.7 |
109.5 |
O3 |
C3 |
H3 |
109.9 |
109.6 |
C3 |
O3 |
HO3 |
118.1 |
106.8 |
C5 |
C4 |
O4 |
111.7 |
109.7 |
C5 |
C4 |
H4 |
109.4 |
109.4 |
C4 |
C5 |
C6 |
112.9 |
109.4 |
C4 |
C5 |
O5 |
109.2 |
109.7 |
C4 |
C5 |
H5 |
106.2 |
109.4 |
O4 |
C4 |
H4 |
107.9 |
109.6 |
C4 |
O4 |
HO4 |
108.3 |
106.8 |
C6 |
C5 |
O5 |
105.7 |
109.5 |
C6 |
C5 |
H5 |
109.7 |
109.4 |
C5 |
C6 |
O6 |
111.6 |
109.5 |
C5 |
C6 |
H61 |
111.4 |
109.5 |
C5 |
C6 |
H62 |
111.4 |
109.5 |
O5 |
C5 |
H5 |
113.4 |
109.4 |
O6 |
C6 |
H61 |
111.5 |
109.4 |
O6 |
C6 |
H62 |
111.5 |
109.5 |
C6 |
O6 |
HO6 |
111.5 |
106.8 |
H61 |
C6 |
H62 |
98.9 |
109.4 |
Torsion Angles for GLB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
112.5 |
120.1 |
O1 |
C1 |
C2 |
H1 |
236.9 |
240.2 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
179.7 |
O5 |
C1 |
C2 |
H1 |
124.4 |
120.1 |
C2 |
C1 |
O5 |
C5 |
288.3 |
292.4 |
C3 |
C2 |
C1 |
O2 |
243.5 |
240.0 |
C3 |
C2 |
C1 |
H2 |
122.9 |
119.8 |
C1 |
C2 |
C3 |
C4 |
301.5 |
306.2 |
C1 |
C2 |
C3 |
O3 |
177.8 |
186.4 |
C1 |
C2 |
C3 |
H3 |
61.0 |
66.1 |
O2 |
C2 |
C1 |
H2 |
239.4 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
59.9 |
C2 |
C1 |
O1 |
O5 |
246.5 |
239.7 |
C2 |
C1 |
O1 |
H1 |
122.3 |
119.8 |
O1 |
C1 |
C2 |
C3 |
179.0 |
181.3 |
O1 |
C1 |
C2 |
O2 |
295.5 |
301.3 |
O1 |
C1 |
C2 |
H2 |
56.1 |
61.5 |
O5 |
C1 |
O1 |
H1 |
235.8 |
240.1 |
O1 |
C1 |
O5 |
C5 |
172.8 |
172.4 |
C2 |
C1 |
O5 |
O1 |
115.4 |
120.1 |
C2 |
C1 |
O5 |
H1 |
238.1 |
240.0 |
O5 |
C1 |
C2 |
C3 |
66.5 |
61.2 |
O5 |
C1 |
C2 |
O2 |
183.0 |
181.2 |
O5 |
C1 |
C2 |
H2 |
303.6 |
301.4 |
O1 |
C1 |
O5 |
H1 |
122.6 |
119.9 |
O5 |
C1 |
O1 |
HO1 |
293.5 |
300.0 |
C4 |
C5 |
O5 |
C1 |
65.6 |
67.6 |
C6 |
C5 |
O5 |
C1 |
187.3 |
187.7 |
C1 |
O5 |
C5 |
H5 |
307.5 |
307.6 |
C2 |
C1 |
H1 |
O1 |
238.5 |
240.2 |
C2 |
C1 |
H1 |
O5 |
119.7 |
120.3 |
H1 |
C1 |
C2 |
C3 |
302.1 |
301.1 |
H1 |
C1 |
C2 |
O2 |
58.6 |
61.1 |
H1 |
C1 |
C2 |
H2 |
179.2 |
181.3 |
O1 |
C1 |
H1 |
O5 |
241.3 |
240.0 |
H1 |
C1 |
O1 |
HO1 |
57.7 |
59.9 |
H1 |
C1 |
O5 |
C5 |
50.2 |
52.5 |
C3 |
C2 |
C1 |
O1 |
179.0 |
181.3 |
C3 |
C2 |
C1 |
O5 |
66.5 |
61.2 |
C3 |
C2 |
C1 |
H1 |
302.1 |
301.1 |
C1 |
C2 |
C3 |
O2 |
117.8 |
119.9 |
C1 |
C2 |
C3 |
H2 |
238.3 |
240.2 |
O2 |
C2 |
C3 |
H2 |
120.4 |
120.2 |
C3 |
C2 |
O2 |
HO2 |
295.0 |
179.5 |
C4 |
C3 |
C2 |
O3 |
123.7 |
119.8 |
C4 |
C3 |
C2 |
H3 |
240.5 |
240.1 |
C2 |
C3 |
C4 |
C5 |
52.3 |
53.9 |
C2 |
C3 |
C4 |
O4 |
291.8 |
293.8 |
C2 |
C3 |
C4 |
H4 |
172.5 |
173.5 |
O3 |
C3 |
C2 |
H3 |
116.8 |
120.3 |
C2 |
C3 |
O3 |
HO3 |
180.1 |
300.0 |
O2 |
C2 |
C1 |
O1 |
295.5 |
301.3 |
O2 |
C2 |
C1 |
O5 |
183.0 |
181.2 |
O2 |
C2 |
C1 |
H1 |
58.6 |
61.1 |
C1 |
C2 |
O2 |
C3 |
245.0 |
240.4 |
C1 |
C2 |
O2 |
H2 |
122.0 |
120.2 |
C3 |
C2 |
O2 |
H2 |
237.0 |
239.8 |
O2 |
C2 |
C3 |
C4 |
183.7 |
186.3 |
O2 |
C2 |
C3 |
O3 |
60.0 |
66.4 |
O2 |
C2 |
C3 |
H3 |
303.2 |
306.1 |
H2 |
C2 |
C1 |
O1 |
56.1 |
61.5 |
H2 |
C2 |
C1 |
O5 |
303.6 |
301.4 |
H2 |
C2 |
C1 |
H1 |
179.2 |
181.3 |
C1 |
C2 |
H2 |
C3 |
118.6 |
119.5 |
C1 |
C2 |
H2 |
O2 |
238.7 |
239.8 |
C3 |
C2 |
H2 |
O2 |
120.1 |
120.3 |
H2 |
C2 |
C3 |
C4 |
63.3 |
66.0 |
H2 |
C2 |
C3 |
O3 |
299.6 |
306.2 |
H2 |
C2 |
C3 |
H3 |
182.7 |
185.9 |
H2 |
C2 |
O2 |
HO2 |
58.0 |
299.8 |
C4 |
C3 |
C2 |
O2 |
183.7 |
186.3 |
C4 |
C3 |
C2 |
H2 |
63.3 |
66.0 |
C2 |
C3 |
C4 |
O3 |
229.1 |
240.2 |
C2 |
C3 |
C4 |
H3 |
110.1 |
119.8 |
O3 |
C3 |
C4 |
H3 |
241.0 |
239.6 |
C4 |
C3 |
O3 |
HO3 |
50.8 |
180.9 |
C5 |
C4 |
C3 |
O4 |
120.5 |
120.1 |
C5 |
C4 |
C3 |
H4 |
239.8 |
240.3 |
C3 |
C4 |
C5 |
C6 |
191.6 |
178.5 |
C3 |
C4 |
C5 |
O5 |
308.8 |
298.7 |
C3 |
C4 |
C5 |
H5 |
71.4 |
58.7 |
O4 |
C4 |
C3 |
H4 |
119.3 |
120.2 |
C3 |
C4 |
O4 |
HO4 |
180.1 |
300.0 |
O3 |
C3 |
C2 |
O2 |
60.0 |
66.4 |
O3 |
C3 |
C2 |
H2 |
299.6 |
306.2 |
C2 |
C3 |
O3 |
C4 |
129.3 |
119.2 |
C2 |
C3 |
O3 |
H3 |
250.4 |
239.7 |
C4 |
C3 |
O3 |
H3 |
121.1 |
120.5 |
O3 |
C3 |
C4 |
C5 |
183.2 |
173.6 |
O3 |
C3 |
C4 |
O4 |
62.7 |
53.6 |
O3 |
C3 |
C4 |
H4 |
303.4 |
293.3 |
H3 |
C3 |
C2 |
O2 |
303.2 |
306.1 |
H3 |
C3 |
C2 |
H2 |
182.7 |
185.9 |
C2 |
C3 |
H3 |
C4 |
238.7 |
240.8 |
C2 |
C3 |
H3 |
O3 |
123.2 |
120.3 |
C4 |
C3 |
H3 |
O3 |
244.5 |
239.5 |
H3 |
C3 |
C4 |
C5 |
302.2 |
294.1 |
H3 |
C3 |
C4 |
O4 |
181.8 |
174.0 |
H3 |
C3 |
C4 |
H4 |
62.4 |
53.8 |
H3 |
C3 |
O3 |
HO3 |
289.6 |
60.3 |
C1 |
O5 |
C5 |
C4 |
65.6 |
67.6 |
C5 |
C4 |
C3 |
O3 |
183.2 |
173.6 |
C5 |
C4 |
C3 |
H3 |
302.2 |
294.1 |
C3 |
C4 |
C5 |
O4 |
241.7 |
240.0 |
C3 |
C4 |
C5 |
H4 |
122.2 |
119.8 |
O4 |
C4 |
C5 |
H4 |
240.6 |
239.8 |
C5 |
C4 |
O4 |
HO4 |
62.6 |
180.3 |
C6 |
C5 |
C4 |
O5 |
242.8 |
239.9 |
C6 |
C5 |
C4 |
H5 |
120.2 |
119.8 |
C4 |
C5 |
C6 |
O6 |
186.2 |
180.1 |
C4 |
C5 |
C6 |
H61 |
311.5 |
60.1 |
C4 |
C5 |
C6 |
H62 |
60.9 |
300.2 |
O5 |
C5 |
C4 |
H5 |
237.4 |
240.0 |
O4 |
C4 |
C3 |
O3 |
62.7 |
53.6 |
O4 |
C4 |
C3 |
H3 |
181.8 |
174.0 |
C3 |
C4 |
O4 |
C5 |
117.5 |
119.6 |
C3 |
C4 |
O4 |
H4 |
237.7 |
239.8 |
C5 |
C4 |
O4 |
H4 |
120.3 |
120.1 |
O4 |
C4 |
C5 |
C6 |
310.0 |
298.6 |
O4 |
C4 |
C5 |
O5 |
67.2 |
58.7 |
O4 |
C4 |
C5 |
H5 |
189.8 |
178.7 |
H4 |
C4 |
C3 |
O3 |
303.4 |
293.3 |
H4 |
C4 |
C3 |
H3 |
62.4 |
53.8 |
C3 |
C4 |
H4 |
C5 |
241.3 |
240.6 |
C3 |
C4 |
H4 |
O4 |
119.6 |
120.3 |
C5 |
C4 |
H4 |
O4 |
238.3 |
239.7 |
H4 |
C4 |
C5 |
C6 |
69.4 |
58.8 |
H4 |
C4 |
C5 |
O5 |
186.6 |
178.9 |
H4 |
C4 |
C5 |
H5 |
309.2 |
298.9 |
H4 |
C4 |
O4 |
HO4 |
302.3 |
60.2 |
C1 |
O5 |
C5 |
C6 |
187.3 |
187.7 |
C6 |
C5 |
C4 |
O4 |
310.0 |
298.6 |
C6 |
C5 |
C4 |
H4 |
69.4 |
58.8 |
C4 |
C5 |
C6 |
O5 |
119.2 |
120.3 |
C4 |
C5 |
C6 |
H5 |
241.8 |
240.2 |
O5 |
C5 |
C6 |
H5 |
122.6 |
119.9 |
O6 |
C6 |
C5 |
H61 |
234.7 |
120.0 |
O6 |
C6 |
C5 |
H62 |
125.3 |
240.0 |
C5 |
C6 |
O6 |
HO6 |
180.0 |
180.0 |
H61 |
C6 |
C5 |
H62 |
250.6 |
120.0 |
C5 |
O5 |
C1 |
H1 |
50.2 |
52.5 |
O5 |
C5 |
C4 |
O4 |
67.2 |
58.7 |
O5 |
C5 |
C4 |
H4 |
186.6 |
178.9 |
C4 |
C5 |
O5 |
C6 |
238.3 |
239.9 |
C4 |
C5 |
O5 |
H5 |
118.2 |
120.0 |
C6 |
C5 |
O5 |
H5 |
239.8 |
240.1 |
O5 |
C5 |
C6 |
O6 |
66.9 |
59.9 |
O5 |
C5 |
C6 |
H61 |
192.2 |
299.8 |
O5 |
C5 |
C6 |
H62 |
301.6 |
179.9 |
H5 |
C5 |
C4 |
O4 |
189.8 |
178.7 |
H5 |
C5 |
C4 |
H4 |
309.2 |
298.9 |
C4 |
C5 |
H5 |
C6 |
122.3 |
119.9 |
C4 |
C5 |
H5 |
O5 |
240.1 |
239.8 |
C6 |
C5 |
H5 |
O5 |
117.9 |
119.9 |
H5 |
C5 |
C6 |
O6 |
304.4 |
300.0 |
H5 |
C5 |
C6 |
H61 |
69.6 |
179.9 |
H5 |
C5 |
C6 |
H62 |
179.0 |
60.0 |
O6 |
C6 |
C5 |
O5 |
66.9 |
59.9 |
O6 |
C6 |
C5 |
H5 |
304.4 |
300.0 |
C5 |
C6 |
O6 |
H61 |
125.3 |
239.9 |
C5 |
C6 |
O6 |
H62 |
234.7 |
120.0 |
H61 |
C6 |
O6 |
H62 |
109.5 |
240.1 |
H61 |
C6 |
C5 |
O5 |
192.2 |
299.8 |
H61 |
C6 |
C5 |
H5 |
69.6 |
179.9 |
C5 |
C6 |
H61 |
O6 |
234.6 |
120.1 |
C5 |
C6 |
H61 |
H62 |
117.3 |
240.0 |
O6 |
C6 |
H61 |
H62 |
242.7 |
119.9 |
H61 |
C6 |
O6 |
HO6 |
54.7 |
300.1 |
H62 |
C6 |
C5 |
O5 |
301.6 |
179.9 |
H62 |
C6 |
C5 |
H5 |
179.0 |
60.0 |
C5 |
C6 |
H62 |
O6 |
125.4 |
240.0 |
C5 |
C6 |
H62 |
H61 |
242.7 |
120.0 |
O6 |
C6 |
H62 |
H61 |
117.3 |
240.1 |
H62 |
C6 |
O6 |
HO6 |
305.3 |
60.0 |
HO1 |
O1 |
C1 |
O5 |
293.5 |
300.0 |
HO1 |
O1 |
C1 |
H1 |
57.7 |
59.9 |
HO2 |
O2 |
C2 |
H2 |
58.0 |
299.8 |
HO3 |
O3 |
C3 |
H3 |
289.6 |
60.3 |
HO4 |
O4 |
C4 |
H4 |
302.3 |
60.2 |
HO6 |
O6 |
C6 |
H61 |
54.7 |
300.1 |
HO6 |
O6 |
C6 |
H62 |
305.3 |
60.0 |