PDB Chemical Component GL1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GL1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.533	1.530
C1	O1	1.417	1.429
C1	O5	1.454	1.427
C1	H1	1.114	1.090
C2	C3	1.523	1.532
C2	O2	1.459	1.429
C2	H2	1.114	1.089
C3	C4	1.590	1.533
C3	O3	1.424	1.429
C3	H3	1.116	1.090
C4	C5	1.555	1.530
C4	O4	1.449	1.429
C4	H4	1.116	1.090
C5	C6	1.561	1.530
C5	O5	1.444	1.426
C5	H5	1.115	1.090
C6	O6	1.379	1.429
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O1	P	1.640	1.610
O2	HO2	0.951	0.966
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.968
P	O1P	1.566	1.609
P	O2P	1.552	1.610
P	O3P	1.569	1.480
O1P	H1P	0.950	0.968
O2P	H2P	0.950	0.967

Bond Angles for GL1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	111.2	109.4
C2	C1	O5	108.6	109.8
C2	C1	H1	107.7	109.5
C1	C2	C3	110.9	109.0
C1	C2	O2	110.0	109.5
C1	C2	H2	108.5	109.5
O1	C1	O5	105.7	109.4
O1	C1	H1	110.6	109.4
C1	O1	P	122.8	106.8
O5	C1	H1	113.1	109.4
C1	O5	C5	114.8	107.6
C3	C2	O2	110.5	109.6
C3	C2	H2	108.0	109.6
C2	C3	C4	110.6	108.6
C2	C3	O3	110.1	109.6
C2	C3	H3	108.7	109.7
O2	C2	H2	108.9	109.5
C2	O2	HO2	110.0	106.8
C4	C3	O3	110.7	109.7
C4	C3	H3	108.1	109.7
C3	C4	C5	107.5	109.0
C3	C4	O4	109.4	109.5
C3	C4	H4	112.4	109.5
O3	C3	H3	108.5	109.6
C3	O3	HO3	110.1	106.7
C5	C4	O4	114.0	109.7
C5	C4	H4	107.8	109.5
C4	C5	C6	110.5	109.4
C4	C5	O5	110.1	109.8
C4	C5	H5	107.7	109.4
O4	C4	H4	105.8	109.5
C4	O4	HO4	109.4	106.8
C6	C5	O5	107.5	109.4
C6	C5	H5	110.3	109.4
C5	C6	O6	106.1	109.4
C5	C6	H61	113.5	109.5
C5	C6	H62	113.4	109.4
O5	C5	H5	110.8	109.4
O6	C6	H61	113.4	109.5
O6	C6	H62	113.4	109.5
C6	O6	HO6	106.2	106.8
H61	C6	H62	97.1	109.5
O1	P	O1P	110.8	109.5
O1	P	O2P	103.8	109.5
O1	P	O3P	110.9	109.5
O1P	P	O2P	111.1	109.5
O1P	P	O3P	110.9	109.5
P	O1P	H1P	110.8	106.8
O2P	P	O3P	109.0	109.5
P	O2P	H2P	103.8	106.8

Torsion Angles for GL1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	244.1	240.0
O1	C1	C2	H1	121.3	119.9
C2	C1	O1	P	263.9	210.3
O5	C1	C2	H1	237.2	239.9
C2	C1	O5	C5	298.9	292.4
C3	C2	C1	O2	237.4	240.1
C3	C2	C1	H2	118.4	119.9
C1	C2	C3	C4	304.2	306.2
C1	C2	C3	O3	181.5	186.4
C1	C2	C3	H3	62.8	66.0
O2	C2	C1	H2	241.0	239.9
C1	C2	O2	HO2	180.0	60.0
C2	C1	O1	O5	117.7	120.3
C2	C1	O1	H1	240.4	240.1
O1	C1	C2	C3	300.8	301.2
O1	C1	C2	O2	63.3	61.2
O1	C1	C2	H2	182.3	181.3
O5	C1	O1	H1	122.7	119.8
O1	C1	O5	C5	58.3	52.5
C1	O1	P	O1P	184.4	65.0
C1	O1	P	O2P	303.8	185.0
C1	O1	P	O3P	60.7	305.0
C2	C1	O5	O1	240.6	240.0
C2	C1	O5	H1	119.5	120.1
O5	C1	C2	C3	56.7	61.3
O5	C1	C2	O2	179.2	181.2
O5	C1	C2	H2	298.2	301.3
O1	C1	O5	H1	238.9	240.1
O5	C1	O1	P	146.2	90.0
C4	C5	O5	C1	62.3	67.6
C6	C5	O5	C1	182.7	187.7
C1	O5	C5	H5	303.3	307.6
C2	C1	H1	O1	121.7	119.8
C2	C1	H1	O5	240.0	239.7
H1	C1	C2	C3	179.5	181.4
H1	C1	C2	O2	302.0	301.3
H1	C1	C2	H2	61.1	61.4
O1	C1	H1	O5	118.3	119.8
H1	C1	O1	P	23.5	330.2
H1	C1	O5	C5	179.4	172.3
C3	C2	C1	O1	300.8	301.2
C3	C2	C1	O5	56.7	61.3
C3	C2	C1	H1	179.5	181.4
C1	C2	C3	O2	122.3	119.9
C1	C2	C3	H2	241.3	240.1
O2	C2	C3	H2	119.0	120.3
C3	C2	O2	HO2	302.8	179.6
C4	C3	C2	O3	122.7	119.9
C4	C3	C2	H3	241.5	240.2
C2	C3	C4	C5	54.3	53.8
C2	C3	C4	O4	290.0	293.8
C2	C3	C4	H4	172.8	173.6
O3	C3	C2	H3	118.8	120.3
C2	C3	O3	HO3	180.0	300.0
O2	C2	C1	O1	63.3	61.2
O2	C2	C1	O5	179.2	181.2
O2	C2	C1	H1	302.0	301.3
C1	C2	O2	C3	237.2	240.4
C1	C2	O2	H2	118.8	120.1
C3	C2	O2	H2	241.6	239.7
O2	C2	C3	C4	181.9	186.4
O2	C2	C3	O3	59.2	66.5
O2	C2	C3	H3	300.5	306.2
H2	C2	C1	O1	182.3	181.3
H2	C2	C1	O5	298.2	301.3
H2	C2	C1	H1	61.1	61.4
C1	C2	H2	C3	120.2	119.6
C1	C2	H2	O2	240.2	239.9
C3	C2	H2	O2	120.0	120.3
H2	C2	C3	C4	63.0	66.1
H2	C2	C3	O3	300.3	306.3
H2	C2	C3	H3	181.5	185.9
H2	C2	O2	HO2	61.2	299.9
C4	C3	C2	O2	181.9	186.4
C4	C3	C2	H2	63.0	66.1
C2	C3	C4	O3	237.7	240.2
C2	C3	C4	H3	118.9	119.8
O3	C3	C4	H3	241.3	239.6
C4	C3	O3	HO3	57.4	180.8
C5	C4	C3	O4	124.3	120.0
C5	C4	C3	H4	241.5	240.2
C3	C4	C5	C6	185.7	178.6
C3	C4	C5	O5	304.2	298.7
C3	C4	C5	H5	65.2	58.7
O4	C4	C3	H4	117.2	120.1
C3	C4	O4	HO4	180.0	300.0
O3	C3	C2	O2	59.2	66.5
O3	C3	C2	H2	300.3	306.3
C2	C3	O3	C4	122.6	119.2
C2	C3	O3	H3	241.1	239.6
C4	C3	O3	H3	118.5	120.4
O3	C3	C4	C5	176.6	173.6
O3	C3	C4	O4	52.3	53.6
O3	C3	C4	H4	295.1	293.5
H3	C3	C2	O2	300.5	306.2
H3	C3	C2	H2	181.5	185.9
C2	C3	H3	C4	239.9	240.8
C2	C3	H3	O3	119.8	120.4
C4	C3	H3	O3	239.9	239.5
H3	C3	C4	C5	295.3	294.0
H3	C3	C4	O4	171.0	173.9
H3	C3	C4	H4	53.8	53.8
H3	C3	O3	HO3	298.9	60.4
C1	O5	C5	C4	62.3	67.6
C5	C4	C3	O3	176.6	173.6
C5	C4	C3	H3	295.3	294.0
C3	C4	C5	O4	238.5	240.1
C3	C4	C5	H4	121.4	119.8
O4	C4	C5	H4	242.9	239.8
C5	C4	O4	HO4	59.6	180.4
C6	C5	C4	O5	241.5	239.9
C6	C5	C4	H5	120.6	119.9
C4	C5	C6	O6	301.4	185.2
C4	C5	C6	H61	66.6	65.2
C4	C5	C6	H62	176.1	305.2
O5	C5	C4	H5	239.1	240.0
O4	C4	C3	O3	52.3	53.6
O4	C4	C3	H3	171.0	173.9
C3	C4	O4	C5	120.4	119.6
C3	C4	O4	H4	238.7	239.9
C5	C4	O4	H4	118.2	120.2
O4	C4	C5	C6	307.2	298.5
O4	C4	C5	O5	65.8	58.6
O4	C4	C5	H5	186.7	178.6
H4	C4	C3	O3	295.1	293.5
H4	C4	C3	H3	53.8	53.8
C3	C4	H4	C5	241.7	240.5
C3	C4	H4	O4	119.4	120.1
C5	C4	H4	O4	237.7	239.7
H4	C4	C5	C6	64.3	58.7
H4	C4	C5	O5	182.8	178.8
H4	C4	C5	H5	303.7	298.9
H4	C4	O4	HO4	301.3	60.1
C1	O5	C5	C6	182.7	187.7
C6	C5	C4	O4	307.2	298.5
C6	C5	C4	H4	64.3	58.7
C4	C5	C6	O5	120.1	120.3
C4	C5	C6	H5	241.0	240.1
O5	C5	C6	H5	120.9	119.8
O6	C6	C5	H61	234.8	120.0
O6	C6	C5	H62	125.2	240.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	250.4	120.0
C5	O5	C1	H1	179.4	172.3
O5	C5	C4	O4	65.8	58.6
O5	C5	C4	H4	182.8	178.8
C4	C5	O5	C6	239.6	239.9
C4	C5	O5	H5	119.0	120.0
C6	C5	O5	H5	239.4	240.1
O5	C5	C6	O6	181.3	64.9
O5	C5	C6	H61	306.5	304.9
O5	C5	C6	H62	56.1	184.9
H5	C5	C4	O4	186.7	178.6
H5	C5	C4	H4	303.7	298.9
C4	C5	H5	C6	120.7	119.9
C4	C5	H5	O5	239.6	239.7
C6	C5	H5	O5	118.9	119.9
H5	C5	C6	O6	60.4	305.0
H5	C5	C6	H61	185.6	185.0
H5	C5	C6	H62	295.2	65.0
O6	C6	C5	O5	181.3	64.9
O6	C6	C5	H5	60.4	305.0
C5	C6	O6	H61	125.2	240.0
C5	C6	O6	H62	234.8	120.0
H61	C6	O6	H62	109.5	239.9
H61	C6	C5	O5	306.5	304.9
H61	C6	C5	H5	185.6	185.0
C5	C6	H61	O6	238.8	120.0
C5	C6	H61	H62	119.4	240.0
O6	C6	H61	H62	240.6	120.1
H61	C6	O6	HO6	54.7	300.0
H62	C6	C5	O5	56.1	184.9
H62	C6	C5	H5	295.2	65.0
C5	C6	H62	O6	121.2	240.0
C5	C6	H62	H61	240.6	120.0
O6	C6	H62	H61	119.4	239.9
H62	C6	O6	HO6	305.2	60.0
P	O1	C1	O5	146.2	90.0
P	O1	C1	H1	23.5	330.2
O1P	P	O1	O2P	240.6	240.0
O1P	P	O1	O3P	123.6	120.0
O1	P	O1P	H1P	180.1	60.0
O2P	P	O1	O3P	243.0	240.0
O1	P	O2P	H2P	180.0	180.0
HO2	O2	C2	H2	61.2	299.9
HO3	O3	C3	H3	298.9	60.4
HO4	O4	C4	H4	301.3	60.1
HO6	O6	C6	H61	54.7	300.0
HO6	O6	C6	H62	305.2	60.0
O1	P	O1P	O2P	114.9	120.0
O1	P	O1P	O3P	236.4	240.0
O2P	P	O1P	O3P	121.4	120.0
O1P	P	O2P	H2P	299.2	300.0
O1	P	O2P	O1P	240.8	240.0
O1	P	O2P	O3P	118.3	120.0
O1P	P	O2P	O3P	237.5	240.0
O2P	P	O1P	H1P	65.1	300.0
O1	P	O3P	O1P	123.6	120.0
O1	P	O3P	O2P	246.2	240.0
O1P	P	O3P	O2P	122.7	120.0
O3P	P	O1P	H1P	303.7	180.0
O3P	P	O2P	H2P	61.7	60.0
H1P	O1P	P	O2P	65.1	300.0
H1P	O1P	P	O3P	303.7	180.0
H2P	O2P	P	O3P	61.7	60.0