PDB Chemical Component GCU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GCU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.559	1.531
C1	O1	1.448	1.428
C1	O5	1.463	1.426
C1	H1	1.116	1.090
C2	C3	1.529	1.529
C2	O2	1.432	1.429
C2	H2	1.116	1.090
C3	C4	1.540	1.531
C3	O3	1.433	1.429
C3	H3	1.115	1.090
C4	C5	1.550	1.530
C4	O4	1.431	1.428
C4	H4	1.116	1.090
C5	C6	1.533	1.507
C5	O5	1.460	1.426
C5	H5	1.115	1.090
C6	O6A	1.348	1.208
C6	O6B	1.209	1.341
O1	HO1	0.950	0.967
O2	HO2	0.950	0.967
O3	HO3	0.949	0.967
O4	HO4	0.950	0.967
O6B	HO6B	0.949	0.967

Bond Angles for GCU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	110.3	109.4
C2	C1	O5	110.2	109.7
C2	C1	H1	109.4	109.4
C1	C2	C3	107.1	109.1
C1	C2	O2	109.5	109.5
C1	C2	H2	111.0	109.5
O1	C1	O5	112.1	109.4
O1	C1	H1	107.3	109.4
C1	O1	HO1	110.2	106.8
O5	C1	H1	107.4	109.4
C1	O5	C5	112.5	107.6
C3	C2	O2	109.5	109.6
C3	C2	H2	111.1	109.6
C2	C3	C4	108.6	108.7
C2	C3	O3	110.3	109.8
C2	C3	H3	108.8	109.6
O2	C2	H2	108.7	109.5
C2	O2	HO2	109.5	106.8
C4	C3	O3	107.5	109.6
C4	C3	H3	111.6	109.6
C3	C4	C5	110.7	109.0
C3	C4	O4	109.7	109.7
C3	C4	H4	107.7	109.5
O3	C3	H3	109.9	109.5
C3	O3	HO3	110.3	106.8
C5	C4	O4	107.3	109.6
C5	C4	H4	110.2	109.5
C4	C5	C6	112.6	109.4
C4	C5	O5	107.6	109.8
C4	C5	H5	108.6	109.4
O4	C4	H4	111.2	109.5
C4	O4	HO4	109.6	106.9
C6	C5	O5	109.2	109.5
C6	C5	H5	106.9	109.4
C5	C6	O6A	116.2	119.9
C5	C6	O6B	122.8	120.1
O5	C5	H5	112.0	109.4
O6A	C6	O6B	120.9	120.0
C6	O6B	HO6B	122.8	120.1

Torsion Angles for GCU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	235.7	240.0
O1	C1	C2	H1	117.8	119.9
C2	C1	O1	HO1	180.0	180.1
O5	C1	C2	H1	242.2	239.9
C2	C1	O5	C5	297.1	292.5
C3	C2	C1	O2	241.4	240.1
C3	C2	C1	H2	121.4	119.9
C1	C2	C3	C4	301.4	306.2
C1	C2	C3	O3	183.8	186.4
C1	C2	C3	H3	63.1	66.0
O2	C2	C1	H2	240.0	239.9
C1	C2	O2	HO2	180.0	60.4
C2	C1	O1	O5	123.2	120.2
C2	C1	O1	H1	240.9	240.1
O1	C1	C2	C3	295.9	301.2
O1	C1	C2	O2	54.5	61.2
O1	C1	C2	H2	174.4	181.3
O5	C1	O1	H1	117.7	119.9
O1	C1	O5	C5	60.3	52.5
C2	C1	O5	O1	236.7	240.0
C2	C1	O5	H1	119.1	120.0
O5	C1	C2	C3	60.2	61.3
O5	C1	C2	O2	178.8	181.2
O5	C1	C2	H2	298.8	301.3
O1	C1	O5	H1	242.3	240.1
O5	C1	O1	HO1	56.8	59.9
C4	C5	O5	C1	60.3	67.5
C6	C5	O5	C1	182.9	187.7
C1	O5	C5	H5	301.1	307.5
C2	C1	H1	O1	119.6	119.9
C2	C1	H1	O5	240.4	239.8
H1	C1	C2	C3	178.0	181.3
H1	C1	C2	O2	296.7	301.3
H1	C1	C2	H2	56.6	61.4
O1	C1	H1	O5	120.8	119.9
H1	C1	O1	HO1	299.1	300.0
H1	C1	O5	C5	178.0	172.5
C3	C2	C1	O1	295.9	301.2
C3	C2	C1	O5	60.2	61.3
C3	C2	C1	H1	178.0	181.3
C1	C2	C3	O2	118.6	119.9
C1	C2	C3	H2	238.7	240.1
O2	C2	C3	H2	120.0	120.2
C3	C2	O2	HO2	297.1	180.0
C4	C3	C2	O3	117.6	119.9
C4	C3	C2	H3	238.3	240.3
C2	C3	C4	C5	59.8	53.7
C2	C3	C4	O4	178.0	173.7
C2	C3	C4	H4	299.2	293.8
O3	C3	C2	H3	120.7	120.4
C2	C3	O3	HO3	180.0	299.3
O2	C2	C1	O1	54.5	61.2
O2	C2	C1	O5	178.8	181.2
O2	C2	C1	H1	296.7	301.3
C1	C2	O2	C3	242.9	240.4
C1	C2	O2	H2	121.4	120.1
C3	C2	O2	H2	238.5	239.8
O2	C2	C3	C4	182.8	186.4
O2	C2	C3	O3	65.2	66.5
O2	C2	C3	H3	304.5	306.1
H2	C2	C1	O1	174.4	181.3
H2	C2	C1	O5	298.8	301.3
H2	C2	C1	H1	56.6	61.4
C1	C2	H2	C3	119.0	119.6
C1	C2	H2	O2	239.5	239.9
C3	C2	H2	O2	120.5	120.3
H2	C2	C3	C4	62.8	66.2
H2	C2	C3	O3	305.1	306.3
H2	C2	C3	H3	184.5	185.9
H2	C2	O2	HO2	58.6	300.3
C4	C3	C2	O2	182.8	186.4
C4	C3	C2	H2	62.8	66.2
C2	C3	C4	O3	240.6	240.0
C2	C3	C4	H3	120.0	119.8
O3	C3	C4	H3	239.4	239.8
C4	C3	O3	HO3	61.7	180.0
C5	C4	C3	O4	241.8	240.0
C5	C4	C3	H4	120.6	119.8
C3	C4	C5	C6	181.1	178.7
C3	C4	C5	O5	301.5	298.9
C3	C4	C5	H5	62.9	58.9
O4	C4	C3	H4	238.8	239.8
C3	C4	O4	HO4	180.0	180.4
O3	C3	C2	O2	65.2	66.5
O3	C3	C2	H2	305.1	306.3
C2	C3	O3	C4	118.3	119.3
C2	C3	O3	H3	240.0	239.6
C4	C3	O3	H3	121.7	120.2
O3	C3	C4	C5	179.2	173.7
O3	C3	C4	O4	297.4	293.7
O3	C3	C4	H4	58.6	53.8
H3	C3	C2	O2	304.5	306.1
H3	C3	C2	H2	184.5	185.9
C2	C3	H3	C4	240.1	240.8
C2	C3	H3	O3	120.9	120.5
C4	C3	H3	O3	240.8	239.7
H3	C3	C4	C5	299.8	293.9
H3	C3	C4	O4	58.0	53.9
H3	C3	C4	H4	179.2	174.1
H3	C3	O3	HO3	300.0	59.7
C1	O5	C5	C4	60.3	67.5
C5	C4	C3	O3	179.2	173.7
C5	C4	C3	H3	299.8	293.9
C3	C4	C5	O4	119.7	120.1
C3	C4	C5	H4	240.9	240.2
O4	C4	C5	H4	121.2	120.1
C5	C4	O4	HO4	300.3	300.0
C6	C5	C4	O5	239.6	239.8
C6	C5	C4	H5	118.2	119.7
C4	C5	C6	O6A	261.8	120.3
C4	C5	C6	O6B	81.0	300.4
O5	C5	C4	H5	238.6	240.0
O4	C4	C3	O3	297.4	293.7
O4	C4	C3	H3	58.0	53.9
C3	C4	O4	C5	239.7	240.3
C3	C4	O4	H4	119.1	120.2
C5	C4	O4	H4	239.4	239.9
O4	C4	C5	C6	61.4	58.6
O4	C4	C5	O5	181.8	178.8
O4	C4	C5	H5	303.2	298.8
H4	C4	C3	O3	58.6	53.8
H4	C4	C3	H3	179.2	174.1
C3	C4	H4	C5	120.9	119.5
C3	C4	H4	O4	239.7	239.7
C5	C4	H4	O4	118.8	120.2
H4	C4	C5	C6	300.2	298.5
H4	C4	C5	O5	60.6	58.7
H4	C4	C5	H5	182.0	178.7
H4	C4	O4	HO4	60.9	60.2
C1	O5	C5	C6	182.9	187.7
C6	C5	C4	O4	61.4	58.6
C6	C5	C4	H4	300.2	298.5
C4	C5	C6	O5	119.5	120.4
C4	C5	C6	H5	240.8	240.2
O5	C5	C6	H5	121.4	119.8
O6A	C6	C5	O6B	180.8	179.9
C5	C6	O6B	HO6B	180.0	179.9
C5	O5	C1	H1	178.0	172.5
O5	C5	C4	O4	181.8	178.8
O5	C5	C4	H4	60.6	58.7
C4	C5	O5	C6	237.4	239.8
C4	C5	O5	H5	119.2	120.0
C6	C5	O5	H5	241.8	240.2
O5	C5	C6	O6A	142.3	359.9
O5	C5	C6	O6B	321.5	180.0
H5	C5	C4	O4	303.2	298.8
H5	C5	C4	H4	182.0	178.7
C4	C5	H5	C6	121.8	119.8
C4	C5	H5	O5	241.4	239.7
C6	C5	H5	O5	119.6	119.9
H5	C5	C6	O6A	21.0	240.1
H5	C5	C6	O6B	200.2	60.1
O6A	C6	C5	O5	142.3	359.9
O6A	C6	C5	H5	21.0	240.1
C5	C6	O6A	O6B	179.2	180.1
O6A	C6	O6B	HO6B	359.2	0.0
O6B	C6	C5	O5	321.5	180.0
O6B	C6	C5	H5	200.2	60.1
C5	C6	O6B	O6A	180.8	179.9
HO1	O1	C1	O5	56.8	59.9
HO1	O1	C1	H1	299.1	300.0
HO2	O2	C2	H2	58.6	300.3
HO3	O3	C3	H3	300.0	59.7
HO4	O4	C4	H4	60.9	60.2