PDB Chemical Component EMR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EMR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C2	1.437	1.426
O1	C6	1.440	1.427
C2	C3	1.450	1.529
C2	H21	1.114	1.089
C2	H22	1.115	1.090
C3	N4	1.465	1.468
C3	H31	1.115	1.090
C3	H32	1.116	1.090
N4	C5	1.463	1.468
N4	C1'	1.449	1.468
C5	C6	1.459	1.528
C5	H51	1.115	1.090
C5	H52	1.116	1.090
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C1'	C2'	1.540	1.529
C1'	H1'1	1.116	1.090
C1'	H1'2	1.115	1.090
C2'	N2'	1.460	1.468
C2'	H2'1	1.115	1.089
C2'	H2'2	1.115	1.090
N2'	HN21	1.020	1.009
N2'	HN22	1.020	1.007

Bond Angles for EMR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O1	C6	108.5	107.2
O1	C2	C3	109.0	109.7
O1	C2	H21	112.4	109.5
O1	C2	H22	112.4	109.4
O1	C6	C5	110.6	109.8
O1	C6	H61	111.8	109.5
O1	C6	H62	111.8	109.4
C3	C2	H21	112.4	109.5
C3	C2	H22	112.4	109.4
C2	C3	N4	111.7	109.6
C2	C3	H31	111.4	109.4
C2	C3	H32	111.4	109.5
H21	C2	H22	98.1	109.4
N4	C3	H31	111.4	109.4
N4	C3	H32	111.4	109.5
C3	N4	C5	105.0	106.7
C3	N4	C1'	108.3	106.7
H31	C3	H32	99.0	109.4
C5	N4	C1'	107.8	106.7
N4	C5	C6	111.7	109.6
N4	C5	H51	111.4	109.5
N4	C5	H52	111.4	109.4
N4	C1'	C2'	110.7	109.6
N4	C1'	H1'1	111.8	109.5
N4	C1'	H1'2	111.8	109.5
C6	C5	H51	111.4	109.5
C6	C5	H52	111.4	109.4
C5	C6	H61	111.8	109.5
C5	C6	H62	111.8	109.4
H51	C5	H52	99.0	109.4
H61	C6	H62	98.6	109.3
C2'	C1'	H1'1	111.7	109.4
C2'	C1'	H1'2	111.8	109.5
C1'	C2'	N2'	109.5	109.6
C1'	C2'	H2'1	112.2	109.4
C1'	C2'	H2'2	112.2	109.4
H1'1	C1'	H1'2	98.6	109.4
N2'	C2'	H2'1	112.2	109.5
N2'	C2'	H2'2	112.2	109.5
C2'	N2'	HN21	109.5	106.8
C2'	N2'	HN22	112.2	106.8
H2'1	C2'	H2'2	98.3	109.4
HN21	N2'	HN22	112.2	106.7

Torsion Angles for EMR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	O1	C6	C5	58.9	63.0
C2	O1	C6	H61	184.1	183.3
C2	O1	C6	H62	293.6	303.0
C3	C2	O1	H21	234.8	120.2
C3	C2	O1	H22	125.2	240.0
O1	C2	C3	N4	63.6	62.8
O1	C2	C3	H31	188.9	302.8
O1	C2	C3	H32	298.4	182.9
H21	C2	O1	H22	250.4	119.8
C6	O1	C2	C3	299.8	297.0
C6	O1	C2	H21	65.0	176.8
C6	O1	C2	H22	174.6	57.0
N4	C5	C6	O1	300.1	297.2
O1	C6	C5	H51	174.8	177.1
O1	C6	C5	H52	65.4	57.2
C5	C6	O1	H61	234.8	239.8
C5	C6	O1	H62	125.2	120.0
H61	C6	O1	H62	250.5	240.3
C3	C2	O1	C6	299.8	297.0
O1	C2	C3	H21	125.3	239.8
O1	C2	C3	H22	234.8	120.0
H21	C2	C3	H22	109.5	240.2
N4	C3	C2	H31	234.7	120.0
N4	C3	C2	H32	125.3	239.9
C2	C3	N4	C5	299.6	300.8
C2	C3	N4	C1'	184.7	187.0
H31	C3	C2	H32	250.5	119.9
H21	C2	O1	C6	65.0	176.8
O1	C2	H21	C3	236.6	120.4
O1	C2	H21	H22	118.3	240.2
C3	C2	H21	H22	241.7	119.8
H21	C2	C3	N4	298.4	183.0
H21	C2	C3	H31	63.6	63.0
H21	C2	C3	H32	173.1	303.1
H22	C2	O1	C6	174.6	57.0
O1	C2	H22	C3	123.3	239.8
O1	C2	H22	H21	241.6	119.9
C3	C2	H22	H21	118.3	240.1
H22	C2	C3	N4	188.8	302.8
H22	C2	C3	H31	314.1	182.8
H22	C2	C3	H32	63.6	62.9
N4	C3	C2	H21	298.4	183.0
N4	C3	C2	H22	188.8	302.8
C2	C3	N4	H31	125.3	240.0
C2	C3	N4	H32	234.7	120.1
H31	C3	N4	H32	109.4	240.1
C5	N4	C3	C1'	115.0	113.8
C3	N4	C5	C6	58.0	59.2
C3	N4	C5	H51	183.3	179.3
C3	N4	C5	H52	292.7	299.2
C3	N4	C1'	C2'	273.8	180.0
C3	N4	C1'	H1'1	39.1	60.0
C3	N4	C1'	H1'2	148.5	300.1
H31	C3	C2	H21	63.6	63.0
H31	C3	C2	H22	314.1	182.8
C2	C3	H31	N4	234.5	120.1
C2	C3	H31	H32	117.3	240.0
N4	C3	H31	H32	242.8	119.9
H31	C3	N4	C5	174.3	60.8
H31	C3	N4	C1'	59.4	307.0
H32	C3	C2	H21	173.1	303.1
H32	C3	C2	H22	63.6	62.9
C2	C3	H32	N4	125.5	239.8
C2	C3	H32	H31	242.7	119.9
N4	C3	H32	H31	117.2	240.1
H32	C3	N4	C5	64.9	180.6
H32	C3	N4	C1'	310.0	66.8
O1	C6	C5	N4	300.1	297.2
C5	N4	C3	H31	174.3	60.8
C5	N4	C3	H32	64.9	180.6
C3	N4	C5	C1'	244.7	246.2
C5	N4	C1'	C2'	160.7	66.2
C5	N4	C1'	H1'1	285.9	306.2
C5	N4	C1'	H1'2	35.4	186.3
C6	C5	N4	H51	234.7	239.9
C6	C5	N4	H52	125.3	120.0
N4	C5	C6	H61	174.9	177.0
N4	C5	C6	H62	65.4	57.2
H51	C5	N4	H52	250.6	240.1
C1'	N4	C3	H31	59.4	307.0
C1'	N4	C3	H32	310.0	66.8
C3	N4	C1'	C5	113.1	113.8
C1'	N4	C5	C6	173.3	173.0
C1'	N4	C5	H51	298.6	293.1
C1'	N4	C5	H52	48.0	53.0
C2'	C1'	N4	H1'1	234.8	120.0
C2'	C1'	N4	H1'2	125.3	239.9
N4	C1'	C2'	N2'	211.5	180.0
N4	C1'	C2'	H2'1	336.7	60.0
N4	C1'	C2'	H2'2	86.3	300.0
H1'1	C1'	N4	H1'2	250.6	119.9
O1	C6	C5	H61	125.2	120.3
O1	C6	C5	H62	234.7	240.0
C6	C5	N4	C1'	173.3	173.0
N4	C5	C6	H51	125.3	120.1
N4	C5	C6	H52	234.7	240.0
H51	C5	C6	H52	109.4	119.9
H61	C6	C5	H62	109.5	119.7
H51	C5	N4	C1'	298.6	293.1
N4	C5	H51	C6	234.5	239.9
N4	C5	H51	H52	117.3	119.9
C6	C5	H51	H52	242.8	240.1
H51	C5	C6	H61	49.6	56.8
H51	C5	C6	H62	300.1	297.1
H52	C5	N4	C1'	48.0	53.0
N4	C5	H52	C6	125.5	120.1
N4	C5	H52	H51	242.8	240.0
C6	C5	H52	H51	117.3	119.9
H52	C5	C6	H61	300.2	296.9
H52	C5	C6	H62	190.7	177.2
O1	C6	H61	C5	235.5	239.6
O1	C6	H61	H62	117.8	119.8
H61	C6	C5	H51	49.6	56.8
H61	C6	C5	H52	300.2	296.9
C5	C6	H61	H62	242.3	240.2
O1	C6	H62	C5	124.6	120.3
O1	C6	H62	H61	242.3	240.1
H62	C6	C5	H51	300.1	297.1
H62	C6	C5	H52	190.7	177.2
C5	C6	H62	H61	117.7	119.9
N4	C1'	C2'	H1'1	125.3	240.0
N4	C1'	C2'	H1'2	234.7	120.1
H1'1	C1'	C2'	H1'2	109.4	240.1
N2'	C2'	C1'	H2'1	234.8	120.0
N2'	C2'	C1'	H2'2	125.2	240.0
C1'	C2'	N2'	HN21	180.0	179.9
C1'	C2'	N2'	HN22	54.7	293.8
H2'1	C2'	C1'	H2'2	250.4	119.9
N4	C1'	H1'1	C2'	235.3	120.1
N4	C1'	H1'1	H1'2	117.7	240.0
C2'	C1'	H1'1	H1'2	242.4	119.9
H1'1	C1'	C2'	N2'	86.2	300.0
H1'1	C1'	C2'	H2'1	211.5	180.0
H1'1	C1'	C2'	H2'2	321.0	60.1
N4	C1'	H1'2	C2'	124.7	239.9
N4	C1'	H1'2	H1'1	242.3	120.0
C2'	C1'	H1'2	H1'1	117.6	240.1
H1'2	C1'	C2'	N2'	336.8	59.9
H1'2	C1'	C2'	H2'1	102.1	299.9
H1'2	C1'	C2'	H2'2	211.6	180.0
N2'	C2'	C1'	H1'1	86.2	300.0
N2'	C2'	C1'	H1'2	336.8	59.9
C1'	C2'	N2'	H2'1	125.3	240.0
C1'	C2'	N2'	H2'2	234.8	120.0
H2'1	C2'	N2'	H2'2	109.5	240.0
HN21	N2'	C2'	HN22	125.3	246.1
H2'1	C2'	C1'	H1'1	211.5	180.0
H2'1	C2'	C1'	H1'2	102.1	299.9
C1'	C2'	H2'1	N2'	236.3	120.1
C1'	C2'	H2'1	H2'2	118.2	240.1
N2'	C2'	H2'1	H2'2	241.9	120.0
H2'1	C2'	N2'	HN21	54.7	299.9
H2'1	C2'	N2'	HN22	289.4	53.8
H2'2	C2'	C1'	H1'1	321.0	60.1
H2'2	C2'	C1'	H1'2	211.6	180.0
C1'	C2'	H2'2	N2'	123.7	239.9
C1'	C2'	H2'2	H2'1	241.8	119.9
N2'	C2'	H2'2	H2'1	118.1	240.0
H2'2	C2'	N2'	HN21	305.2	59.9
H2'2	C2'	N2'	HN22	179.9	173.8
HN21	N2'	C2'	H2'1	54.7	299.9
HN21	N2'	C2'	H2'2	305.2	59.9
C2'	N2'	HN21	HN22	234.7	113.9
HN22	N2'	C2'	H2'1	289.4	53.8
HN22	N2'	C2'	H2'2	179.9	173.8
C2'	N2'	HN22	HN21	123.8	246.1