PDB Chemical Component DXX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DXX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.375 |
1.342 |
| C1 |
OXT |
1.231 |
1.208 |
| C1 |
CA |
1.543 |
1.506 |
| O1 |
H1 |
0.961 |
0.967 |
| CA |
CB |
1.542 |
1.530 |
| CA |
C |
1.552 |
1.506 |
| CA |
HA |
1.109 |
1.090 |
| CB |
HB1 |
1.106 |
1.090 |
| CB |
HB2 |
1.107 |
1.090 |
| CB |
HB3 |
1.107 |
1.090 |
| C |
O |
1.237 |
1.208 |
| C |
O2 |
1.346 |
1.342 |
| O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for DXX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
OXT |
124.0 |
120.0 |
| O1 |
C1 |
CA |
113.2 |
120.1 |
| C1 |
O1 |
H1 |
112.0 |
120.1 |
| OXT |
C1 |
CA |
122.8 |
120.0 |
| C1 |
CA |
CB |
112.6 |
109.4 |
| C1 |
CA |
C |
110.9 |
109.5 |
| C1 |
CA |
HA |
106.3 |
109.5 |
| CB |
CA |
C |
112.0 |
109.4 |
| CB |
CA |
HA |
105.3 |
109.5 |
| CA |
CB |
HB1 |
111.6 |
109.5 |
| CA |
CB |
HB2 |
111.5 |
109.5 |
| CA |
CB |
HB3 |
112.3 |
109.5 |
| C |
CA |
HA |
109.3 |
109.5 |
| CA |
C |
O |
120.6 |
120.0 |
| CA |
C |
O2 |
116.5 |
120.1 |
| HB1 |
CB |
HB2 |
106.8 |
109.5 |
| HB1 |
CB |
HB3 |
107.1 |
109.5 |
| HB2 |
CB |
HB3 |
107.2 |
109.5 |
| O |
C |
O2 |
122.9 |
120.0 |
| C |
O2 |
HO2 |
116.6 |
120.1 |
Torsion Angles for DXX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C1 |
O1 |
CA |
180.3 |
179.9 |
| O1 |
C1 |
CA |
CB |
58.0 |
300.0 |
| O1 |
C1 |
CA |
C |
291.6 |
180.0 |
| O1 |
C1 |
CA |
HA |
172.8 |
60.0 |
| O1 |
C1 |
OXT |
CA |
179.6 |
180.1 |
| OXT |
C1 |
O1 |
H1 |
180.2 |
359.9 |
| OXT |
C1 |
CA |
CB |
237.6 |
120.1 |
| OXT |
C1 |
CA |
C |
111.3 |
0.1 |
| OXT |
C1 |
CA |
HA |
352.5 |
240.1 |
| O1 |
C1 |
CA |
OXT |
180.3 |
179.9 |
| CA |
C1 |
O1 |
H1 |
359.8 |
180.0 |
| CB |
CA |
C1 |
C |
126.4 |
120.0 |
| CB |
CA |
C1 |
HA |
245.2 |
240.0 |
| C1 |
CA |
CB |
HB1 |
176.1 |
300.0 |
| C1 |
CA |
CB |
HB2 |
56.7 |
60.0 |
| C1 |
CA |
CB |
HB3 |
296.3 |
180.0 |
| C |
CA |
C1 |
HA |
118.8 |
120.0 |
| C1 |
CA |
C |
O |
70.7 |
359.9 |
| C1 |
CA |
C |
O2 |
250.4 |
180.0 |
| H1 |
O1 |
C1 |
OXT |
180.2 |
359.9 |
| H1 |
O1 |
C1 |
CA |
359.8 |
180.0 |
| C1 |
CA |
CB |
C |
234.2 |
240.0 |
| C1 |
CA |
CB |
HA |
115.5 |
120.0 |
| C |
CA |
CB |
HA |
241.2 |
240.0 |
| CB |
CA |
C |
O |
304.0 |
239.9 |
| CB |
CA |
C |
O2 |
123.7 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
119.4 |
240.0 |
| HB1 |
CB |
CA |
HB3 |
239.7 |
120.0 |
| HB2 |
CB |
CA |
HB3 |
120.3 |
240.0 |
| C1 |
CA |
C |
CB |
126.7 |
120.0 |
| C1 |
CA |
C |
HA |
243.0 |
240.0 |
| CB |
CA |
C |
HA |
116.3 |
120.0 |
| C |
CA |
CB |
HB1 |
301.8 |
60.0 |
| C |
CA |
CB |
HB2 |
182.5 |
180.0 |
| C |
CA |
CB |
HB3 |
62.1 |
300.0 |
| O |
C |
CA |
O2 |
180.3 |
179.9 |
| CA |
C |
O2 |
HO2 |
180.0 |
180.0 |
| C1 |
CA |
HA |
CB |
240.3 |
240.0 |
| C1 |
CA |
HA |
C |
119.8 |
120.0 |
| CB |
CA |
HA |
C |
239.5 |
240.0 |
| HA |
CA |
CB |
HB1 |
60.6 |
180.0 |
| HA |
CA |
CB |
HB2 |
301.2 |
300.0 |
| HA |
CA |
CB |
HB3 |
180.9 |
60.0 |
| HA |
CA |
C |
O |
187.6 |
119.9 |
| HA |
CA |
C |
O2 |
7.4 |
300.0 |
| HB1 |
CB |
CA |
C |
301.8 |
60.0 |
| HB1 |
CB |
CA |
HA |
60.6 |
180.0 |
| CA |
CB |
HB1 |
HB2 |
237.9 |
120.0 |
| CA |
CB |
HB1 |
HB3 |
123.3 |
240.0 |
| HB2 |
CB |
HB1 |
HB3 |
245.4 |
120.0 |
| HB2 |
CB |
CA |
C |
182.5 |
180.0 |
| HB2 |
CB |
CA |
HA |
301.2 |
300.0 |
| CA |
CB |
HB2 |
HB1 |
122.1 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
236.7 |
120.0 |
| HB1 |
CB |
HB2 |
HB3 |
114.6 |
240.0 |
| HB3 |
CB |
CA |
C |
62.1 |
300.0 |
| HB3 |
CB |
CA |
HA |
180.9 |
60.0 |
| CA |
CB |
HB3 |
HB1 |
237.2 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
122.8 |
240.0 |
| HB1 |
CB |
HB3 |
HB2 |
245.6 |
120.0 |
| O |
C |
CA |
HA |
187.6 |
119.9 |
| CA |
C |
O |
O2 |
179.7 |
180.1 |
| O |
C |
O2 |
HO2 |
359.7 |
0.1 |
| O2 |
C |
CA |
HA |
7.4 |
300.0 |
| CA |
C |
O2 |
O |
180.3 |
179.9 |