PDB Chemical Component DUR

Ideal Model

Chemical Description

Name 2'-DEOXYURIDINE
Formula C9 H12 N2 O5
Formal charge 0
Molecular weight 228.202 g/mol
Component type NON-POLYMER

Chemical features

Atom count 28
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 29
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyuridine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H](C[C@@H]1O)N2C=CC(=O)NC2=O
SMILES (CACTVS) OC[CH]1O[CH](C[CH]1O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO)O
InChI descriptor InChI=1S/C9H12N2O5/c12-4-6-5(13)3-8(16-6)11-2-1-7(14)10-9(11)15/h1-2,5-6,8,12-13H,3-4H2,(H,10,14,15)/t5-,6+,8+/m0/s1
InChIKey descriptor MXHRCPNRJAMMIM-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1BDU
Processing site RCSB