PDB Chemical Component DTB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DTB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CN O 1.238 1.216
CN N2 1.369 1.339
CN N1 1.344 1.339
N2 CR 1.450 1.471
N2 HN2 1.001 0.970
CR CS 1.578 1.541
CR CE 1.574 1.530
CR HCR 1.100 1.090
CS N1 1.442 1.472
CS CT 1.554 1.530
CS HCS 1.100 1.090
N1 HN1 1.000 0.970
CT HCT1 1.099 1.090
CT HCT2 1.100 1.090
CT HCT3 1.100 1.090
CE CD 1.540 1.530
CE HCE1 1.100 1.090
CE HCE2 1.100 1.090
CD CG 1.516 1.530
CD HCD1 1.100 1.090
CD HCD2 1.100 1.091
CG CB 1.512 1.530
CG HCG1 1.100 1.089
CG HCG2 1.099 1.090
CB CA 1.549 1.530
CB HCB1 1.100 1.090
CB HCB2 1.100 1.090
CA C 1.591 1.507
CA HCA1 1.100 1.090
CA HCA2 1.100 1.090
C OI1 1.252 1.208
C OI2 1.237 1.343
OI2 HOI2 0.950 0.967

Bond Angles for DTB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O CN N2 126.4 123.0
O CN N1 124.3 123.0
N2 CN N1 109.2 114.0
CN N2 CR 110.0 109.2
CN N2 HN2 125.0 125.5
CN N1 CS 107.9 109.1
CN N1 HN1 126.1 125.5
CR N2 HN2 125.0 125.4
N2 CR CS 98.3 103.9
N2 CR CE 113.7 110.6
N2 CR HCR 112.1 110.6
CS CR CE 111.6 110.5
CS CR HCR 110.3 110.5
CR CS N1 99.9 103.8
CR CS CT 120.3 110.6
CR CS HCS 106.7 110.5
CE CR HCR 110.3 110.6
CR CE CD 111.9 109.5
CR CE HCE1 108.8 109.5
CR CE HCE2 108.9 109.5
N1 CS CT 113.8 110.7
N1 CS HCS 108.4 110.3
CS N1 HN1 126.0 125.4
CT CS HCS 107.0 110.6
CS CT HCT1 109.5 109.4
CS CT HCT2 109.5 109.5
CS CT HCT3 109.4 109.5
HCT1 CT HCT2 109.4 109.5
HCT1 CT HCT3 109.5 109.5
HCT2 CT HCT3 109.5 109.5
CD CE HCE1 108.9 109.5
CD CE HCE2 108.9 109.4
CE CD CG 119.4 109.5
CE CD HCD1 106.9 109.5
CE CD HCD2 106.9 109.4
HCE1 CE HCE2 109.4 109.5
CG CD HCD1 107.0 109.5
CG CD HCD2 106.9 109.5
CD CG CB 110.7 109.4
CD CG HCG1 109.1 109.5
CD CG HCG2 109.2 109.5
HCD1 CD HCD2 109.5 109.5
CB CG HCG1 109.1 109.4
CB CG HCG2 109.1 109.5
CG CB CA 109.9 109.5
CG CB HCB1 109.4 109.5
CG CB HCB2 109.4 109.5
HCG1 CG HCG2 109.5 109.5
CA CB HCB1 109.4 109.4
CA CB HCB2 109.4 109.5
CB CA C 116.1 109.5
CB CA HCA1 107.8 109.5
CB CA HCA2 107.8 109.5
HCB1 CB HCB2 109.4 109.4
C CA HCA1 107.8 109.4
C CA HCA2 107.8 109.5
CA C OI1 119.8 120.0
CA C OI2 116.6 120.0
HCA1 CA HCA2 109.5 109.5
OI1 C OI2 123.5 120.0
C OI2 HOI2 109.5 117.0

Torsion Angles for DTB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N2 CN O N1 180.2 180.2
O CN N2 CR 175.0 180.0
O CN N2 HN2 355.0 0.0
O CN N1 CS 158.9 179.8
O CN N1 HN1 338.9 360.0
O CN N2 N1 179.8 179.8
N2 CN N1 CS 338.8 359.6
N2 CN N1 HN1 158.8 179.8
CR N2 CN HN2 180.0 180.0
CN N2 CR CS 25.5 0.0
CN N2 CR CE 143.6 118.6
CN N2 CR HCR 269.6 241.4
O CN N1 N2 180.1 180.2
N1 CN N2 CR 355.2 0.3
N1 CN N2 HN2 175.2 180.3
CR CS N1 CN 35.7 0.4
CN N1 CS CT 266.1 241.7
CN N1 CS HCS 147.1 118.9
CS N1 CN HN1 180.0 179.8
CR N2 CN N1 355.2 0.3
CN N2 CR HN2 180.0 180.0
CS CR N2 CE 241.9 241.4
CS CR N2 HCR 115.9 118.6
N2 CR CS N1 324.6 359.8
N2 CR CS CT 89.8 118.5
N2 CR CS HCS 211.9 241.4
CE CR N2 HCR 234.0 237.2
N2 CR CE CD 174.2 66.4
N2 CR CE HCE1 294.6 186.5
N2 CR CE HCE2 53.8 306.5
HN2 N2 CN N1 175.2 180.3
CN N2 HN2 CR 180.0 180.0
HN2 N2 CR CS 205.5 180.0
HN2 N2 CR CE 323.6 298.6
HN2 N2 CR HCR 89.6 61.4
CN N1 CS CR 35.7 0.4
CS CR N2 HN2 205.5 180.0
N2 CR CS CE 119.7 118.6
N2 CR CS HCR 242.6 241.4
CE CR CS HCR 123.0 122.8
CS CR CE CD 284.3 180.9
CS CR CE HCE1 44.7 300.9
CS CR CE HCE2 163.9 61.0
N1 CS CR CT 234.8 241.2
N1 CS CR HCS 112.7 118.3
CR CS N1 HN1 215.7 180.2
CT CS CR HCS 238.0 237.1
CR CS CT HCT1 180.0 60.0
CR CS CT HCT2 300.0 180.0
CR CS CT HCT3 60.0 300.1
CE CR N2 HN2 323.6 298.6
N2 CR CE CS 249.9 245.6
N2 CR CE HCR 127.0 122.8
CS CR CE HCR 237.0 237.3
CE CR CS N1 204.9 241.1
CE CR CS CT 330.2 359.9
CE CR CS HCS 92.2 122.8
CD CE CR HCE1 239.6 240.0
CD CE CR HCE2 120.4 119.9
CR CE CD CG 193.7 180.0
CR CE CD HCD1 315.2 300.0
CR CE CD HCD2 72.3 60.0
HCE1 CE CR HCE2 240.8 240.0
HCR CR N2 HN2 89.6 61.4
N2 CR HCR CS 108.4 114.5
N2 CR HCR CE 232.2 237.2
CS CR HCR CE 123.8 122.7
HCR CR CS N1 81.9 118.4
HCR CR CS CT 207.2 237.2
HCR CR CS HCS 329.2 0.0
HCR CR CE CD 47.3 303.6
HCR CR CE HCE1 167.6 63.7
HCR CR CE HCE2 286.9 183.7
CN N1 CS HN1 180.0 180.2
N1 CS CR CE 204.9 241.1
N1 CS CR HCR 81.9 118.4
CR CS N1 CT 129.6 118.7
CR CS N1 HCS 248.5 241.5
CT CS N1 HCS 119.0 122.8
N1 CS CT HCT1 298.4 174.6
N1 CS CT HCT2 58.4 294.5
N1 CS CT HCT3 178.4 54.6
CT CS CR CE 330.2 359.9
CT CS CR HCR 207.2 237.2
CR CS CT N1 241.6 245.5
CR CS CT HCS 121.9 122.8
N1 CS CT HCS 240.3 237.3
CT CS N1 HN1 86.1 61.5
HCT1 CT CS HCT2 240.0 240.0
HCT1 CT CS HCT3 120.0 120.0
HCT2 CT CS HCT3 240.0 240.0
HCS CS CR CE 92.2 122.8
HCS CS CR HCR 329.2 0.0
CR CS HCS N1 106.8 114.3
CR CS HCS CT 230.0 237.2
N1 CS HCS CT 123.2 122.9
HCS CS N1 HN1 327.1 298.7
HCS CS CT HCT1 58.1 297.2
HCS CS CT HCT2 178.1 57.2
HCS CS CT HCT3 298.1 177.2
CN N1 HN1 CS 180.0 179.8
HN1 N1 CS CT 86.1 61.5
HN1 N1 CS HCS 327.1 298.7
HCT1 CT CS HCS 58.1 297.2
CS CT HCT1 HCT2 120.0 120.0
CS CT HCT1 HCT3 240.0 240.0
HCT2 CT HCT1 HCT3 120.0 120.0
HCT2 CT CS HCS 178.1 57.2
CS CT HCT2 HCT1 240.0 240.1
CS CT HCT2 HCT3 120.0 120.0
HCT1 CT HCT2 HCT3 240.0 240.0
HCT3 CT CS HCS 298.1 177.2
CS CT HCT3 HCT1 120.0 119.9
CS CT HCT3 HCT2 240.0 240.0
HCT1 CT HCT3 HCT2 120.0 120.0
CD CE CR HCR 47.3 303.6
CR CE CD HCE1 120.4 120.0
CR CE CD HCE2 239.6 240.0
HCE1 CE CD HCE2 119.2 120.0
CG CD CE HCD1 238.6 240.0
CG CD CE HCD2 121.4 120.0
CE CD CG CB 201.5 180.0
CE CD CG HCG1 321.6 300.0
CE CD CG HCG2 81.3 60.1
HCD1 CD CE HCD2 242.8 240.0
HCE1 CE CR HCR 167.6 63.7
CR CE HCE1 CD 237.8 240.0
CR CE HCE1 HCE2 118.9 120.0
CD CE HCE1 HCE2 241.1 240.1
HCE1 CE CD CG 73.4 60.0
HCE1 CE CD HCD1 194.8 180.0
HCE1 CE CD HCD2 312.0 300.0
HCE2 CE CR HCR 286.9 183.7
CR CE HCE2 CD 122.2 120.0
CR CE HCE2 HCE1 241.1 239.9
CD CE HCE2 HCE1 118.9 120.0
HCE2 CE CD CG 314.1 300.0
HCE2 CE CD HCD1 75.5 60.0
HCE2 CE CD HCD2 192.7 180.0
CG CD CE HCE1 73.4 60.0
CG CD CE HCE2 314.1 300.0
CE CD CG HCD1 121.4 120.0
CE CD CG HCD2 238.6 240.1
HCD1 CD CG HCD2 117.2 120.0
CB CG CD HCG1 239.8 240.0
CB CG CD HCG2 120.2 120.0
CD CG CB CA 181.5 180.0
CD CG CB HCB1 301.6 300.0
CD CG CB HCB2 61.4 60.0
HCG1 CG CD HCG2 240.4 239.9
HCD1 CD CE HCE1 194.8 180.0
HCD1 CD CE HCE2 75.5 60.0
CE CD HCD1 CG 231.0 240.0
CE CD HCD1 HCD2 115.5 120.0
CG CD HCD1 HCD2 244.5 240.0
HCD1 CD CG CB 80.1 60.0
HCD1 CD CG HCG1 200.2 180.0
HCD1 CD CG HCG2 319.9 300.0
HCD2 CD CE HCE1 312.0 300.0
HCD2 CD CE HCE2 192.7 180.0
CE CD HCD2 CG 129.0 120.0
CE CD HCD2 HCD1 244.5 240.0
CG CD HCD2 HCD1 115.5 120.0
HCD2 CD CG CB 322.8 300.0
HCD2 CD CG HCG1 83.0 59.9
HCD2 CD CG HCG2 202.7 180.0
CB CG CD HCD1 80.1 60.0
CB CG CD HCD2 322.8 300.0
CD CG CB HCG1 120.2 120.0
CD CG CB HCG2 239.8 240.0
HCG1 CG CB HCG2 119.6 120.0
CA CB CG HCB1 239.9 240.0
CA CB CG HCB2 120.1 120.0
CG CB CA C 49.5 180.0
CG CB CA HCA1 170.5 300.0
CG CB CA HCA2 288.5 60.0
HCB1 CB CG HCB2 240.2 240.0
HCG1 CG CD HCD1 200.2 180.0
HCG1 CG CD HCD2 83.0 59.9
CD CG HCG1 CB 238.8 240.0
CD CG HCG1 HCG2 119.4 120.0
CB CG HCG1 HCG2 240.6 240.0
HCG1 CG CB CA 61.3 60.0
HCG1 CG CB HCB1 181.4 180.0
HCG1 CG CB HCB2 301.2 300.0
HCG2 CG CD HCD1 319.9 300.0
HCG2 CG CD HCD2 202.7 180.0
CD CG HCG2 CB 121.2 120.0
CD CG HCG2 HCG1 240.6 239.9
CB CG HCG2 HCG1 119.4 120.0
HCG2 CG CB CA 301.7 300.0
HCG2 CG CB HCB1 61.7 60.0
HCG2 CG CB HCB2 181.6 180.0
CA CB CG HCG1 61.3 60.0
CA CB CG HCG2 301.7 300.0
CG CB CA HCB1 120.1 120.0
CG CB CA HCB2 239.9 239.9
HCB1 CB CA HCB2 119.9 119.9
C CA CB HCA1 239.0 240.0
C CA CB HCA2 121.0 120.0
CB CA C OI1 51.6 360.0
CB CA C OI2 236.2 180.0
HCA1 CA CB HCA2 241.9 240.0
HCB1 CB CG HCG1 181.4 180.0
HCB1 CB CG HCG2 61.7 60.0
CG CB HCB1 CA 239.6 240.0
CG CB HCB1 HCB2 119.8 120.1
CA CB HCB1 HCB2 240.2 240.1
HCB1 CB CA C 289.4 60.0
HCB1 CB CA HCA1 50.4 180.0
HCB1 CB CA HCA2 168.4 300.0
HCB2 CB CG HCG1 301.2 300.0
HCB2 CB CG HCG2 181.6 180.0
CG CB HCB2 CA 120.4 120.0
CG CB HCB2 HCB1 240.2 240.0
CA CB HCB2 HCB1 119.8 119.9
HCB2 CB CA C 169.6 300.1
HCB2 CB CA HCA1 290.5 60.0
HCB2 CB CA HCA2 48.6 180.1
C CA CB HCB1 289.4 60.0
C CA CB HCB2 169.6 300.1
CB CA C HCA1 121.0 120.0
CB CA C HCA2 239.0 240.0
HCA1 CA C HCA2 118.1 120.0
OI1 C CA OI2 175.4 180.0
CA C OI2 HOI2 175.2 180.0
HCA1 CA CB HCB1 50.4 180.0
HCA1 CA CB HCB2 290.5 60.0
CB CA HCA1 C 234.0 240.0
CB CA HCA1 HCA2 117.0 120.0
C CA HCA1 HCA2 243.0 240.0
HCA1 CA C OI1 290.6 240.0
HCA1 CA C OI2 115.2 60.0
HCA2 CA CB HCB1 168.4 300.0
HCA2 CA CB HCB2 48.6 180.1
CB CA HCA2 C 126.0 120.0
CB CA HCA2 HCA1 243.0 240.0
C CA HCA2 HCA1 117.0 120.0
HCA2 CA C OI1 172.6 120.0
HCA2 CA C OI2 357.2 300.0
OI1 C CA HCA1 290.6 240.0
OI1 C CA HCA2 172.6 120.0
CA C OI1 OI2 184.9 180.0
OI1 C OI2 HOI2 360.0 0.1
OI2 C CA HCA1 115.2 60.0
OI2 C CA HCA2 357.2 300.0
CA C OI2 OI1 175.2 180.0