PDB Chemical Component DHY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DHY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.433	1.381
C1	C6	1.410	1.382
C1	C7	1.550	1.507
C2	C3	1.362	1.386
C2	H2	1.103	1.079
C3	C4	1.387	1.391
C3	O3	1.365	1.359
C4	C5	1.399	1.385
C4	O4	1.380	1.359
C5	C6	1.425	1.383
C5	H5	1.103	1.080
C6	H6	1.102	1.079
C7	C8	1.583	1.506
C7	H71	1.115	1.090
C7	H72	1.115	1.089
C8	O1	1.269	1.208
C8	O2	1.235	1.342
O2	HO2	0.949	0.967
O3	HO3	0.951	0.966
O4	HO4	0.950	0.966

Bond Angles for DHY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	121.1	120.2
C2	C1	C7	119.7	119.9
C1	C2	C3	117.9	120.0
C1	C2	H2	123.5	120.1
C6	C1	C7	118.9	119.9
C1	C6	C5	118.8	120.1
C1	C6	H6	120.1	120.0
C1	C7	C8	113.6	109.5
C1	C7	H71	110.7	109.5
C1	C7	H72	110.7	109.5
C3	C2	H2	118.6	120.0
C2	C3	C4	122.4	119.8
C2	C3	O3	121.8	120.1
C4	C3	O3	115.8	120.1
C3	C4	C5	121.0	119.9
C3	C4	O4	114.4	120.1
C3	O3	HO3	121.8	106.9
C5	C4	O4	124.5	120.1
C4	C5	C6	118.7	120.0
C4	C5	H5	119.7	120.1
C4	O4	HO4	114.5	106.9
C6	C5	H5	121.6	119.9
C5	C6	H6	121.1	119.9
C8	C7	H71	110.7	109.4
C8	C7	H72	110.7	109.5
C7	C8	O1	114.4	119.9
C7	C8	O2	120.9	120.1
H71	C7	H72	99.6	109.4
O1	C8	O2	124.7	120.0
C8	O2	HO2	120.9	120.0

Torsion Angles for DHY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	186.2	179.7
C2	C1	C6	C5	359.4	0.3
C2	C1	C6	H6	179.5	180.3
C2	C1	C7	C8	255.0	269.6
C2	C1	C7	H71	20.2	149.7
C2	C1	C7	H72	129.7	29.8
C3	C2	C1	H2	180.0	179.5
C1	C2	C3	C4	359.8	0.5
C1	C2	C3	O3	182.3	180.2
C2	C1	C6	C7	173.9	180.3
C6	C1	C2	C3	0.4	359.5
C6	C1	C2	H2	180.4	179.9
C6	C1	C7	C8	69.0	90.0
C6	C1	C7	H71	194.2	330.0
C6	C1	C7	H72	303.7	210.1
C4	C5	C6	C1	0.5	359.9
C1	C6	C5	H5	180.6	180.0
C5	C6	C1	H6	179.9	180.0
C2	C1	C7	C6	186.0	179.7
C7	C1	C2	C3	174.2	179.8
C7	C1	C2	H2	354.2	0.2
C7	C1	C6	C5	185.6	180.0
C7	C1	C6	H6	5.6	360.0
C8	C7	C1	H71	234.7	120.0
C8	C7	C1	H72	125.3	239.9
C1	C7	C8	O1	89.6	0.1
C1	C7	C8	O2	269.5	180.0
H71	C7	C1	H72	250.6	119.9
C3	C2	C1	C6	0.4	359.5
C3	C2	C1	C7	174.2	179.8
C1	C2	C3	H2	180.0	180.5
C4	C3	C2	O3	177.5	180.3
C2	C3	C4	C5	0.2	359.7
C2	C3	C4	O4	181.9	179.8
C2	C3	O3	HO3	180.0	270.2
H2	C2	C1	C6	180.4	179.9
H2	C2	C1	C7	354.2	0.2
C1	C2	H2	C3	180.0	179.5
H2	C2	C3	C4	179.8	180.0
H2	C2	C3	O3	2.3	359.8
C4	C3	C2	H2	179.8	180.0
C2	C3	C4	O3	182.4	179.7
C4	C3	O3	HO3	2.4	90.0
C5	C4	C3	O4	178.3	180.0
C3	C4	C5	C6	359.6	0.1
C3	C4	C5	H5	179.6	180.0
C3	C4	O4	HO4	180.0	270.0
O3	C3	C2	H2	2.3	359.8
C2	C3	O3	C4	177.6	180.3
O3	C3	C4	C5	177.8	180.0
O3	C3	C4	O4	359.6	0.0
C1	C6	C5	C4	0.5	359.9
C5	C4	C3	O3	177.8	180.0
C3	C4	C5	O4	181.9	180.0
C5	C4	O4	HO4	1.8	90.0
C6	C5	C4	H5	180.0	180.1
C4	C5	C6	H6	180.5	180.0
O4	C4	C3	O3	359.6	0.0
C3	C4	O4	C5	178.2	180.0
O4	C4	C5	C6	177.7	180.0
O4	C4	C5	H5	357.7	360.0
C5	C6	C1	C7	185.6	180.0
C1	C6	C5	H6	180.1	180.0
C6	C5	C4	O4	177.7	180.0
C4	C5	C6	H5	179.9	179.9
H5	C5	C4	O4	357.7	360.0
C4	C5	H5	C6	180.1	180.1
H5	C5	C6	H6	0.5	0.0
H6	C6	C1	C7	5.6	360.0
C1	C6	H6	C5	179.9	180.0
H6	C6	C5	H5	0.5	0.0
C1	C7	C8	H71	125.2	240.0
C1	C7	C8	H72	234.7	120.1
H71	C7	C8	H72	109.5	240.1
O1	C8	C7	O2	180.0	180.1
C7	C8	O2	HO2	180.0	180.1
C1	C7	H71	C8	233.1	120.0
C1	C7	H71	H72	116.5	240.0
C8	C7	H71	H72	243.4	120.0
H71	C7	C8	O1	324.3	120.1
H71	C7	C8	O2	144.3	300.0
C1	C7	H72	C8	126.9	239.9
C1	C7	H72	H71	243.5	120.0
C8	C7	H72	H71	116.6	240.1
H72	C7	C8	O1	214.9	240.0
H72	C7	C8	O2	34.8	59.9
O1	C8	C7	H71	324.3	120.1
O1	C8	C7	H72	214.9	240.0
C7	C8	O1	O2	180.0	179.9
O1	C8	O2	HO2	360.0	360.0
O2	C8	C7	H71	144.3	300.0
O2	C8	C7	H72	34.8	59.9
C7	C8	O2	O1	180.0	180.1