PDB Chemical Component DHB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DHB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.380 |
1.397 |
C1 |
C6 |
1.388 |
1.398 |
C1 |
C |
1.462 |
1.474 |
C2 |
C3 |
1.392 |
1.381 |
C2 |
H2 |
1.102 |
1.080 |
C3 |
O3 |
1.413 |
1.360 |
C3 |
C4 |
1.390 |
1.393 |
O3 |
HO3 |
0.951 |
0.966 |
C4 |
O4 |
1.380 |
1.357 |
C4 |
C5 |
1.370 |
1.389 |
O4 |
HO4 |
0.950 |
0.966 |
C5 |
C6 |
1.380 |
1.377 |
C5 |
H5 |
1.103 |
1.079 |
C6 |
H6 |
1.103 |
1.079 |
C |
O1 |
1.182 |
1.216 |
C |
O2 |
1.348 |
1.347 |
O2 |
HO2 |
0.950 |
0.968 |
Bond Angles for DHB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
119.9 |
119.9 |
C2 |
C1 |
C |
120.7 |
120.1 |
C1 |
C2 |
C3 |
121.2 |
119.8 |
C1 |
C2 |
H2 |
118.9 |
120.1 |
C6 |
C1 |
C |
119.2 |
120.0 |
C1 |
C6 |
C5 |
119.3 |
120.0 |
C1 |
C6 |
H6 |
120.6 |
120.0 |
C1 |
C |
O1 |
121.8 |
120.0 |
C1 |
C |
O2 |
122.0 |
120.1 |
C3 |
C2 |
H2 |
119.8 |
120.1 |
C2 |
C3 |
O3 |
120.4 |
120.0 |
C2 |
C3 |
C4 |
117.7 |
120.0 |
O3 |
C3 |
C4 |
121.9 |
120.0 |
C3 |
O3 |
HO3 |
120.5 |
106.8 |
C3 |
C4 |
O4 |
121.5 |
120.0 |
C3 |
C4 |
C5 |
121.4 |
120.1 |
O4 |
C4 |
C5 |
117.1 |
119.9 |
C4 |
O4 |
HO4 |
121.5 |
106.8 |
C4 |
C5 |
C6 |
120.4 |
120.1 |
C4 |
C5 |
H5 |
119.4 |
119.9 |
C6 |
C5 |
H5 |
120.2 |
119.9 |
C5 |
C6 |
H6 |
120.0 |
120.0 |
O1 |
C |
O2 |
116.1 |
120.0 |
C |
O2 |
HO2 |
122.0 |
120.0 |
Torsion Angles for DHB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C |
175.0 |
179.8 |
C2 |
C1 |
C6 |
C5 |
359.2 |
0.2 |
C2 |
C1 |
C6 |
H6 |
179.2 |
180.2 |
C2 |
C1 |
C |
O1 |
353.7 |
359.8 |
C2 |
C1 |
C |
O2 |
169.7 |
179.7 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.5 |
C1 |
C2 |
C3 |
O3 |
180.1 |
180.3 |
C1 |
C2 |
C3 |
C4 |
0.7 |
0.5 |
C2 |
C1 |
C6 |
C |
184.9 |
180.2 |
C6 |
C1 |
C2 |
C3 |
1.0 |
359.5 |
C6 |
C1 |
C2 |
H2 |
180.9 |
180.0 |
C6 |
C1 |
C |
O1 |
178.7 |
180.0 |
C6 |
C1 |
C |
O2 |
354.7 |
360.0 |
C4 |
C5 |
C6 |
C1 |
359.0 |
360.0 |
C1 |
C6 |
C5 |
H5 |
179.0 |
180.0 |
C5 |
C6 |
C1 |
H6 |
179.9 |
180.0 |
C2 |
C1 |
C |
C6 |
175.0 |
179.8 |
C |
C1 |
C2 |
C3 |
186.0 |
179.7 |
C |
C1 |
C2 |
H2 |
5.9 |
0.2 |
C |
C1 |
C6 |
C5 |
174.3 |
180.0 |
C |
C1 |
C6 |
H6 |
354.3 |
0.0 |
O1 |
C |
C1 |
O2 |
184.0 |
180.0 |
C1 |
C |
O2 |
HO2 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
C6 |
1.0 |
359.5 |
C3 |
C2 |
C1 |
C |
186.0 |
179.7 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.5 |
O3 |
C3 |
C2 |
C4 |
179.4 |
179.8 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
270.2 |
C2 |
C3 |
C4 |
O4 |
176.4 |
179.8 |
C2 |
C3 |
C4 |
C5 |
357.4 |
359.8 |
H2 |
C2 |
C1 |
C6 |
180.9 |
180.0 |
H2 |
C2 |
C1 |
C |
5.9 |
0.2 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.5 |
H2 |
C2 |
C3 |
O3 |
0.2 |
359.8 |
H2 |
C2 |
C3 |
C4 |
180.7 |
180.0 |
O3 |
C3 |
C2 |
H2 |
0.2 |
359.8 |
C2 |
C3 |
O3 |
C4 |
180.6 |
180.2 |
O3 |
C3 |
C4 |
O4 |
356.9 |
360.0 |
O3 |
C3 |
C4 |
C5 |
178.0 |
180.0 |
C4 |
C3 |
C2 |
H2 |
180.7 |
180.0 |
C2 |
C3 |
C4 |
O3 |
179.4 |
179.8 |
C4 |
C3 |
O3 |
HO3 |
359.5 |
90.0 |
O4 |
C4 |
C3 |
C5 |
178.9 |
180.0 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
270.0 |
C3 |
C4 |
C5 |
C6 |
2.8 |
0.0 |
C3 |
C4 |
C5 |
H5 |
182.8 |
180.0 |
HO3 |
O3 |
C3 |
C4 |
359.5 |
90.0 |
C3 |
C4 |
O4 |
C5 |
181.0 |
180.0 |
O4 |
C4 |
C5 |
C6 |
183.8 |
180.0 |
O4 |
C4 |
C5 |
H5 |
3.8 |
360.0 |
C1 |
C6 |
C5 |
C4 |
359.0 |
360.0 |
C3 |
C4 |
C5 |
O4 |
179.0 |
180.0 |
C5 |
C4 |
O4 |
HO4 |
359.0 |
90.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
178.9 |
180.0 |
HO4 |
O4 |
C4 |
C5 |
359.0 |
90.0 |
C5 |
C6 |
C1 |
C |
174.3 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.1 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
358.9 |
0.0 |
H6 |
C6 |
C1 |
C |
354.3 |
0.0 |
C1 |
C6 |
H6 |
C5 |
179.9 |
180.0 |
H6 |
C6 |
C5 |
H5 |
358.9 |
0.0 |
C1 |
C |
O1 |
O2 |
176.2 |
180.0 |
O1 |
C |
O2 |
HO2 |
356.2 |
360.0 |
C1 |
C |
O2 |
O1 |
183.8 |
180.0 |