PDB Chemical Component DG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.590 1.611
OP3 HOP3 0.949 0.967
P OP1 1.492 1.479
P OP2 1.494 1.608
P O5' 1.589 1.610
OP2 HOP2 0.949 0.967
O5' C5' 1.439 1.428
C5' C4' 1.509 1.530
C5' H5' 1.114 1.089
C5' H5'' 1.116 1.090
C4' O4' 1.454 1.446
C4' C3' 1.513 1.550
C4' H4' 1.115 1.090
O4' C1' 1.429 1.437
C3' O3' 1.435 1.430
C3' C2' 1.532 1.547
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.966
C2' C1' 1.521 1.540
C2' H2' 1.114 1.090
C2' H2'' 1.115 1.090
C1' N9 1.460 1.464
C1' H1' 1.115 1.090
N9 C8 1.385 1.364
N9 C4 1.362 1.368
C8 N7 1.304 1.302
C8 H8 1.102 1.081
N7 C5 1.373 1.355
C5 C6 1.432 1.415
C5 C4 1.383 1.400
C6 O6 1.247 1.219
C6 N1 1.386 1.351
N1 C2 1.387 1.362
N1 H1 1.020 0.970
C2 N2 1.341 1.372
C2 N3 1.318 1.314
N2 H21 1.020 0.970
N2 H22 1.019 0.970
N3 C4 1.345 1.338

Bond Angles for DG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.0 106.8
OP3 P OP1 109.0 109.4
OP3 P OP2 109.3 109.4
OP3 P O5' 100.2 109.4
OP1 P OP2 118.7 109.5
OP1 P O5' 112.6 109.5
OP2 P O5' 105.4 109.5
P OP2 HOP2 118.6 106.9
P O5' C5' 119.3 106.8
O5' C5' C4' 109.3 109.5
O5' C5' H5' 112.3 109.4
O5' C5' H5'' 112.3 109.5
C4' C5' H5' 112.3 109.5
C4' C5' H5'' 112.3 109.4
C5' C4' O4' 109.4 110.8
C5' C4' C3' 115.8 110.7
C5' C4' H4' 104.0 110.6
H5' C5' H5'' 98.2 109.5
O4' C4' C3' 105.7 103.6
O4' C4' H4' 114.4 110.5
C4' O4' C1' 110.9 106.9
C3' C4' H4' 107.8 110.6
C4' C3' O3' 107.1 110.9
C4' C3' C2' 104.0 102.1
C4' C3' H3' 115.4 110.9
O4' C1' C2' 107.1 107.4
O4' C1' N9 108.8 109.9
O4' C1' H1' 113.4 109.9
O3' C3' C2' 112.3 110.9
O3' C3' H3' 107.6 110.8
C3' O3' HO3' 107.1 106.7
C2' C3' H3' 110.4 110.9
C3' C2' C1' 103.6 104.2
C3' C2' H2' 114.4 110.5
C3' C2' H2'' 114.4 110.4
C1' C2' H2' 114.5 110.5
C1' C2' H2'' 114.4 110.4
C2' C1' N9 114.7 109.9
C2' C1' H1' 107.4 109.8
H2' C2' H2'' 96.1 110.6
N9 C1' H1' 105.6 109.8
C1' N9 C8 129.6 126.2
C1' N9 C4 123.6 126.3
C8 N9 C4 105.9 107.5
N9 C8 N7 112.9 109.8
N9 C8 H8 126.2 125.1
N9 C4 C5 105.8 106.1
N9 C4 N3 126.1 134.3
N7 C8 H8 121.0 125.1
C8 N7 C5 104.7 109.3
N7 C5 C6 131.0 134.2
N7 C5 C4 110.7 107.2
C6 C5 C4 118.3 118.6
C5 C6 O6 126.9 120.8
C5 C6 N1 112.1 118.3
C5 C4 N3 128.1 119.6
O6 C6 N1 121.0 120.9
C6 N1 C2 124.9 120.4
C6 N1 H1 117.5 119.8
C2 N1 H1 117.6 119.8
N1 C2 N2 115.7 119.1
N1 C2 N3 123.0 121.9
N2 C2 N3 121.2 119.1
C2 N2 H21 115.7 120.0
C2 N2 H22 109.9 120.0
C2 N3 C4 113.4 121.2
H21 N2 H22 110.0 120.0

Torsion Angles for DG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 131.2 240.0
OP1 P OP3 O5' 241.7 120.0
OP2 P OP3 O5' 110.5 240.0
OP3 P OP2 HOP2 305.8 60.0
OP3 P O5' C5' 285.2 180.0
HOP3 OP3 P OP1 180.0 300.0
HOP3 OP3 P OP2 48.9 60.0
HOP3 OP3 P O5' 298.4 180.0
OP1 P OP3 HOP3 180.0 300.0
OP3 P OP1 OP2 234.0 120.0
OP3 P OP1 O5' 110.3 240.0
OP2 P OP1 O5' 236.2 120.1
OP1 P OP2 HOP2 180.0 180.0
OP1 P O5' C5' 40.8 60.0
OP2 P OP3 HOP3 48.9 60.0
OP3 P OP2 OP1 125.8 240.0
OP3 P OP2 O5' 253.0 120.0
OP1 P OP2 O5' 127.2 239.9
OP2 P O5' C5' 171.7 299.9
O5' P OP3 HOP3 298.4 180.0
OP3 P O5' OP1 244.4 119.9
OP3 P O5' OP2 113.5 240.0
OP1 P O5' OP2 229.2 120.1
O5' P OP2 HOP2 52.8 300.1
P O5' C5' C4' 152.6 180.0
P O5' C5' H5' 277.9 60.0
P O5' C5' H5'' 27.4 300.0
HOP2 OP2 P O5' 52.8 300.1
C4' C5' O5' H5' 234.7 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 287.4 65.7
O5' C5' C4' C3' 46.7 180.0
O5' C5' C4' H4' 164.8 302.9
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.8 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 240.7 245.7
O4' C4' C5' H4' 122.6 122.8
C5' C4' O4' C1' 111.8 158.5
C3' C4' C5' H4' 241.9 237.1
C5' C4' C3' O3' 146.1 86.1
C5' C4' C3' C2' 265.2 204.3
C5' C4' C3' H3' 26.3 322.5
O5' C5' H5' C4' 236.4 120.0
O5' C5' H5' H5'' 118.2 240.0
C4' C5' H5' H5'' 241.8 119.9
H5' C5' C4' O4' 162.1 185.7
H5' C5' C4' C3' 281.5 300.0
H5' C5' C4' H4' 39.5 62.9
O5' C5' H5'' C4' 123.6 240.0
O5' C5' H5'' H5' 241.8 120.0
C4' C5' H5'' H5' 118.2 240.0
H5'' C5' C4' O4' 52.6 305.7
H5'' C5' C4' C3' 172.0 60.0
H5'' C5' C4' H4' 290.0 182.9
O4' C4' C5' H5' 162.1 185.7
O4' C4' C5' H5'' 52.6 305.7
C5' C4' O4' C3' 125.4 118.7
C5' C4' O4' H4' 243.8 237.1
C3' C4' O4' H4' 118.4 118.4
O4' C4' C3' O3' 267.4 204.8
O4' C4' C3' C2' 26.5 323.0
O4' C4' C3' H3' 147.7 81.3
C4' O4' C1' C2' 354.6 333.7
C4' O4' C1' N9 230.1 214.1
C4' O4' C1' H1' 112.9 93.2
C3' C4' C5' H5' 281.5 300.0
C3' C4' C5' H5'' 172.0 60.0
C5' C4' C3' O4' 238.7 241.2
C5' C4' C3' H4' 115.9 122.9
O4' C4' C3' H4' 237.3 241.6
C3' C4' O4' C1' 346.5 39.8
O3' C3' C4' C2' 240.9 241.8
O3' C3' C4' H3' 119.8 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 238.9 241.8
C4' C3' C2' C1' 330.8 20.9
C4' C3' C2' H2' 96.0 262.2
C4' C3' C2' H2'' 205.5 139.5
H4' C4' C5' H5' 39.5 62.9
H4' C4' C5' H5'' 290.0 182.9
C5' C4' H4' O4' 119.3 123.0
C5' C4' H4' C3' 236.5 237.1
O4' C4' H4' C3' 117.3 114.1
H4' C4' O4' C1' 228.0 281.4
H4' C4' C3' O3' 30.2 323.2
H4' C4' C3' C2' 149.3 81.4
H4' C4' C3' H3' 270.4 199.6
C1' O4' C4' C3' 346.5 39.8
C1' O4' C4' H4' 228.0 281.4
C3' C2' C1' O4' 21.7 1.9
O4' C1' C2' H2' 256.5 120.6
O4' C1' C2' H2'' 146.9 243.3
C2' C1' O4' N9 124.5 119.6
C2' C1' O4' H1' 241.7 240.6
N9 C1' O4' H1' 117.2 121.0
O4' C1' N9 C8 91.0 28.3
O4' C1' N9 C4 282.8 208.3
O3' C3' C4' H4' 30.2 323.2
C4' C3' O3' C2' 113.6 112.7
C4' C3' O3' H3' 235.4 236.4
C2' C3' O3' H3' 121.8 123.7
O3' C3' C2' C1' 86.2 139.2
O3' C3' C2' H2' 211.5 20.4
O3' C3' C2' H2'' 321.0 257.8
C2' C3' C4' H4' 149.3 81.4
C4' C3' C2' O3' 244.5 241.8
C4' C3' C2' H3' 124.4 118.2
O4' C1' C2' C3' 21.7 1.9
O3' C3' C2' H3' 239.9 236.4
C2' C3' O3' HO3' 66.4 61.4
C1' C2' C3' H2' 234.7 118.7
C1' C2' C3' H2'' 125.2 241.4
C3' C2' C1' N9 142.5 121.5
C3' C2' C1' H1' 259.6 242.4
H2' C2' C3' H2'' 250.5 122.7
H3' C3' C4' H4' 270.4 199.6
C4' C3' H3' O3' 119.5 123.6
C4' C3' H3' C2' 242.4 247.3
O3' C3' H3' C2' 122.9 123.7
H3' C3' O3' HO3' 304.6 297.8
H3' C3' C2' C1' 206.4 262.7
H3' C3' C2' H2' 331.6 144.0
H3' C3' C2' H2'' 81.1 21.3
HO3' O3' C3' C2' 66.4 61.4
HO3' O3' C3' H3' 304.6 297.8
O4' C1' C2' N9 239.2 240.4
O4' C1' C2' H1' 122.1 119.4
C1' C2' C3' H3' 206.4 262.7
C3' C2' C1' H2' 125.3 241.3
C3' C2' C1' H2'' 234.8 118.6
H2' C2' C1' H2'' 109.5 237.3
N9 C1' C2' H1' 242.9 239.0
C2' C1' N9 C8 331.1 270.2
C2' C1' N9 C4 162.9 90.2
H2' C2' C3' H3' 331.6 144.0
C3' C2' H2' C1' 240.7 114.8
C3' C2' H2' H2'' 120.3 237.4
C1' C2' H2' H2'' 239.6 122.6
H2' C2' C1' N9 17.3 240.2
H2' C2' C1' H1' 134.4 1.1
H2'' C2' C3' H3' 81.1 21.3
C3' C2' H2'' C1' 119.3 245.3
C3' C2' H2'' H2' 239.7 122.6
C1' C2' H2'' H2' 120.4 237.3
H2'' C2' C1' N9 267.8 2.9
H2'' C2' C1' H1' 24.8 123.8
O4' C1' N9 C2' 119.9 118.1
O4' C1' N9 H1' 237.9 239.0
N9 C1' C2' H2' 17.3 240.2
N9 C1' C2' H2'' 267.8 2.9
C2' C1' N9 H1' 118.1 120.9
C8 N9 C1' C4 168.2 180.1
C1' N9 C8 N7 189.2 180.0
C1' N9 C8 H8 9.1 360.0
C1' N9 C4 C5 171.0 180.0
C1' N9 C4 N3 349.8 0.2
O4' C1' H1' C2' 241.9 242.0
O4' C1' H1' N9 119.1 121.0
H1' C1' C2' H2' 134.4 1.1
H1' C1' C2' H2'' 24.8 123.8
C2' C1' H1' N9 237.2 239.0
H1' C1' N9 C8 213.0 149.3
H1' C1' N9 C4 44.8 329.3
C8 N9 C1' H1' 213.0 149.3
C1' N9 C8 C4 190.2 179.9
C8 N9 C4 C5 0.4 359.9
C8 N9 C4 N3 179.3 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 1.1 360.0
C4 N9 C1' H1' 44.8 329.3
C1' N9 C4 C8 170.6 180.1
C4 N9 C8 N7 359.0 0.1
C4 N9 C8 H8 179.0 180.0
N7 C5 C4 N9 0.3 0.1
C6 C5 C4 N9 181.2 180.0
C5 C4 N9 N3 181.1 179.8
C2 N3 C4 N9 183.3 180.0
N7 C8 N9 C4 359.0 0.1
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 178.1 180.0
C8 N7 C5 C4 359.2 359.9
H8 C8 N9 C4 179.0 180.0
N9 C8 H8 N7 180.1 180.0
H8 C8 N7 C5 181.2 180.0
N9 C4 C5 N7 0.3 0.1
C5 N7 C8 H8 181.2 180.0
C6 C5 N7 C4 178.9 180.1
N7 C5 C6 O6 355.4 360.0
N7 C5 C6 N1 176.6 179.6
N7 C5 C4 N3 181.4 179.9
N9 C4 C5 C6 181.2 180.0
N7 C5 C6 C4 181.2 179.9
C6 C5 C4 N3 2.4 359.9
O6 C6 C5 N1 178.8 180.3
C5 C6 N1 C2 3.2 0.6
C5 C6 N1 H1 183.1 180.0
N9 C4 C5 N3 178.8 180.2
N7 C5 C4 C6 179.1 180.0
C4 C5 C6 O6 174.2 180.1
C4 C5 C6 N1 355.4 359.7
C2 N3 C4 C5 1.9 0.2
O6 C6 C5 C4 174.2 180.1
C5 C6 O6 N1 181.3 179.6
O6 C6 N1 C2 184.3 180.3
O6 C6 N1 H1 4.3 359.6
N1 C6 C5 C4 355.4 359.7
C5 C6 N1 O6 178.9 180.3
C2 N1 C6 H1 180.1 180.7
C6 N1 C2 N2 179.4 179.6
C6 N1 C2 N3 1.1 359.4
C6 N1 C2 H1 179.9 179.3
N2 C2 N1 N3 178.3 180.2
N1 C2 N2 H21 180.0 179.7
N1 C2 N2 H22 54.7 359.4
N1 C2 N3 C4 356.4 0.2
C6 N1 H1 C2 180.1 180.7
H1 N1 C2 N2 359.4 0.3
H1 N1 C2 N3 181.1 180.1
N2 C2 N1 H1 359.4 0.3
N1 C2 N2 N3 181.7 179.8
N2 C2 N3 C4 178.2 180.0
H21 N2 C2 H22 125.3 180.3
N9 C4 N3 C2 183.3 180.0
C5 C4 N3 C2 1.9 0.2
N3 C2 N1 H1 181.1 180.1
N1 C2 N3 N2 178.2 180.2
N3 C2 N2 H21 358.4 359.9
N3 C2 N2 H22 233.1 179.7
H21 N2 C2 N3 358.4 359.9
C2 N2 H21 H22 234.7 179.7
H22 N2 C2 N3 233.1 179.7
C2 N2 H22 H21 128.5 180.3
N9 C4 N3 C5 181.4 179.8