PDB Chemical Component DFA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DFA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C8 |
O11 |
1.236 |
1.207 |
C8 |
C11 |
1.521 |
1.506 |
C8 |
O1' |
1.323 |
1.343 |
C5 |
C4 |
1.405 |
1.381 |
C5 |
C6 |
1.383 |
1.381 |
C5 |
H5 |
1.103 |
1.081 |
C4 |
C3 |
1.390 |
1.383 |
C4 |
H4 |
1.103 |
1.080 |
C3 |
C2 |
1.391 |
1.382 |
C3 |
C11 |
1.541 |
1.506 |
C2 |
C1 |
1.396 |
1.383 |
C2 |
H2 |
1.103 |
1.079 |
C1 |
C6 |
1.388 |
1.383 |
C1 |
H1 |
1.103 |
1.080 |
C6 |
H6 |
1.103 |
1.080 |
C10 |
C16 |
1.404 |
1.382 |
C10 |
C12 |
1.400 |
1.382 |
C10 |
C11 |
1.520 |
1.507 |
C16 |
C15 |
1.399 |
1.382 |
C16 |
H16 |
1.103 |
1.080 |
C15 |
C14 |
1.398 |
1.381 |
C15 |
H15 |
1.103 |
1.080 |
C14 |
C13 |
1.397 |
1.383 |
C14 |
H14 |
1.102 |
1.080 |
C13 |
C12 |
1.399 |
1.382 |
C13 |
H13 |
1.103 |
1.080 |
C12 |
H12 |
1.103 |
1.079 |
C11 |
H11 |
1.115 |
1.090 |
O1' |
H1' |
0.950 |
0.966 |
Bond Angles for DFA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O11 |
C8 |
C11 |
120.9 |
120.0 |
O11 |
C8 |
O1' |
121.7 |
120.0 |
C11 |
C8 |
O1' |
117.4 |
120.0 |
C8 |
C11 |
C3 |
110.8 |
109.4 |
C8 |
C11 |
C10 |
102.0 |
109.5 |
C8 |
C11 |
H11 |
109.9 |
109.5 |
C8 |
O1' |
H1' |
121.7 |
120.0 |
C4 |
C5 |
C6 |
119.8 |
120.1 |
C4 |
C5 |
H5 |
120.1 |
120.0 |
C5 |
C4 |
C3 |
121.3 |
120.0 |
C5 |
C4 |
H4 |
119.4 |
120.1 |
C6 |
C5 |
H5 |
120.1 |
120.0 |
C5 |
C6 |
C1 |
119.6 |
120.0 |
C5 |
C6 |
H6 |
120.2 |
120.1 |
C3 |
C4 |
H4 |
119.4 |
119.9 |
C4 |
C3 |
C2 |
117.9 |
120.0 |
C4 |
C3 |
C11 |
120.9 |
120.0 |
C2 |
C3 |
C11 |
121.2 |
120.0 |
C3 |
C2 |
C1 |
121.3 |
120.0 |
C3 |
C2 |
H2 |
119.4 |
120.0 |
C3 |
C11 |
C10 |
114.2 |
109.5 |
C3 |
C11 |
H11 |
109.9 |
109.4 |
C1 |
C2 |
H2 |
119.3 |
120.0 |
C2 |
C1 |
C6 |
120.1 |
120.0 |
C2 |
C1 |
H1 |
119.9 |
120.0 |
C6 |
C1 |
H1 |
120.0 |
120.0 |
C1 |
C6 |
H6 |
120.2 |
120.0 |
C16 |
C10 |
C12 |
118.0 |
120.0 |
C16 |
C10 |
C11 |
121.1 |
120.0 |
C10 |
C16 |
C15 |
121.3 |
120.0 |
C10 |
C16 |
H16 |
119.3 |
120.0 |
C12 |
C10 |
C11 |
120.5 |
120.0 |
C10 |
C12 |
C13 |
121.1 |
120.0 |
C10 |
C12 |
H12 |
119.4 |
120.0 |
C10 |
C11 |
H11 |
109.9 |
109.5 |
C15 |
C16 |
H16 |
119.3 |
120.0 |
C16 |
C15 |
C14 |
119.8 |
120.1 |
C16 |
C15 |
H15 |
120.1 |
119.9 |
C14 |
C15 |
H15 |
120.1 |
120.0 |
C15 |
C14 |
C13 |
119.6 |
120.0 |
C15 |
C14 |
H14 |
120.2 |
120.0 |
C13 |
C14 |
H14 |
120.2 |
120.0 |
C14 |
C13 |
C12 |
120.1 |
120.0 |
C14 |
C13 |
H13 |
120.0 |
120.0 |
C12 |
C13 |
H13 |
119.9 |
120.0 |
C13 |
C12 |
H12 |
119.4 |
120.0 |
Torsion Angles for DFA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
C8 |
O11 |
O1' |
179.2 |
180.0 |
O11 |
C8 |
C11 |
C3 |
85.6 |
360.0 |
O11 |
C8 |
C11 |
C10 |
323.7 |
120.0 |
O11 |
C8 |
C11 |
H11 |
207.2 |
240.0 |
O11 |
C8 |
O1' |
H1' |
180.0 |
360.0 |
O11 |
C8 |
C11 |
O1' |
180.8 |
180.0 |
C11 |
C8 |
O1' |
H1' |
0.8 |
180.0 |
C4 |
C3 |
C11 |
C8 |
144.9 |
233.9 |
C2 |
C3 |
C11 |
C8 |
324.5 |
53.7 |
C3 |
C11 |
C8 |
C10 |
121.9 |
240.0 |
C3 |
C11 |
C8 |
H11 |
238.4 |
119.9 |
C16 |
C10 |
C11 |
C8 |
80.8 |
128.6 |
C12 |
C10 |
C11 |
C8 |
268.5 |
308.4 |
C10 |
C11 |
C8 |
H11 |
116.5 |
240.0 |
O11 |
C8 |
O1' |
C11 |
179.2 |
180.0 |
O1' |
C8 |
C11 |
C3 |
264.8 |
180.0 |
O1' |
C8 |
C11 |
C10 |
142.9 |
300.0 |
O1' |
C8 |
C11 |
H11 |
26.4 |
60.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C1 |
0.1 |
359.9 |
C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C2 |
359.7 |
0.2 |
C5 |
C4 |
C3 |
C11 |
179.3 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C3 |
0.2 |
0.0 |
C6 |
C5 |
C4 |
H4 |
180.2 |
180.0 |
C2 |
C1 |
C6 |
C5 |
359.8 |
359.8 |
C5 |
C6 |
C1 |
H1 |
179.8 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
C3 |
180.2 |
180.0 |
H5 |
C5 |
C4 |
H4 |
0.2 |
360.0 |
H5 |
C5 |
C6 |
C1 |
180.1 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.1 |
0.0 |
C8 |
C11 |
C3 |
C4 |
144.9 |
233.9 |
C3 |
C4 |
C5 |
C6 |
0.2 |
0.0 |
C3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C11 |
180.4 |
180.2 |
C4 |
C3 |
C2 |
C1 |
0.2 |
359.5 |
C4 |
C3 |
C2 |
H2 |
180.2 |
180.0 |
C4 |
C3 |
C11 |
C10 |
259.3 |
113.9 |
C4 |
C3 |
C11 |
H11 |
23.3 |
353.9 |
H4 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
H4 |
C4 |
C5 |
H5 |
0.2 |
360.0 |
C5 |
C4 |
H4 |
C3 |
180.0 |
180.0 |
H4 |
C4 |
C3 |
C2 |
179.7 |
180.2 |
H4 |
C4 |
C3 |
C11 |
359.3 |
0.0 |
C8 |
C11 |
C3 |
C2 |
324.5 |
53.7 |
C2 |
C3 |
C4 |
H4 |
179.7 |
180.2 |
C4 |
C3 |
C2 |
C11 |
179.6 |
179.8 |
C2 |
C3 |
C11 |
C10 |
79.0 |
293.7 |
C2 |
C3 |
C11 |
H11 |
202.9 |
173.7 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.5 |
C3 |
C2 |
C1 |
C6 |
0.1 |
0.4 |
C3 |
C2 |
C1 |
H1 |
180.1 |
180.2 |
C3 |
C11 |
C8 |
O1' |
264.8 |
180.0 |
C8 |
C11 |
C3 |
C10 |
245.5 |
120.0 |
C8 |
C11 |
C3 |
H11 |
121.6 |
240.0 |
C11 |
C3 |
C4 |
H4 |
359.3 |
0.0 |
C4 |
C3 |
C11 |
C2 |
180.4 |
180.2 |
C11 |
C3 |
C2 |
C1 |
180.5 |
179.7 |
C11 |
C3 |
C2 |
H2 |
0.6 |
0.2 |
C16 |
C10 |
C11 |
C3 |
321.2 |
248.6 |
C12 |
C10 |
C11 |
C3 |
148.9 |
68.3 |
C10 |
C11 |
C3 |
H11 |
236.1 |
120.0 |
C5 |
C6 |
C1 |
C2 |
359.8 |
359.8 |
C1 |
C2 |
C3 |
C11 |
180.5 |
179.7 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.5 |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
C2 |
C1 |
C6 |
H6 |
179.8 |
179.8 |
H2 |
C2 |
C3 |
C11 |
0.6 |
0.2 |
C3 |
C2 |
H2 |
C1 |
180.0 |
179.5 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
H2 |
C2 |
C1 |
H1 |
0.0 |
359.8 |
C1 |
C6 |
C5 |
H5 |
180.1 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
H1 |
C1 |
C2 |
H2 |
0.0 |
359.8 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.2 |
H1 |
C1 |
C6 |
H6 |
359.8 |
0.0 |
H6 |
C6 |
C5 |
H5 |
0.1 |
0.0 |
C5 |
C6 |
H6 |
C1 |
180.0 |
180.0 |
H6 |
C6 |
C1 |
H1 |
359.8 |
0.0 |
C8 |
C11 |
C10 |
C16 |
80.8 |
128.6 |
C3 |
C11 |
C10 |
C16 |
321.2 |
248.6 |
C12 |
C10 |
C16 |
C11 |
172.5 |
180.3 |
C16 |
C10 |
C12 |
C13 |
359.2 |
359.6 |
C16 |
C10 |
C12 |
H12 |
179.2 |
179.9 |
C16 |
C10 |
C11 |
H11 |
197.3 |
8.6 |
C15 |
C16 |
C10 |
H16 |
180.0 |
179.9 |
C10 |
C16 |
C15 |
C14 |
359.7 |
0.1 |
C10 |
C16 |
C15 |
H15 |
179.7 |
180.0 |
C8 |
C11 |
C10 |
C12 |
268.5 |
308.4 |
C3 |
C11 |
C10 |
C12 |
148.9 |
68.3 |
C16 |
C10 |
C12 |
C11 |
187.5 |
179.7 |
C12 |
C10 |
C16 |
C15 |
0.9 |
0.2 |
C12 |
C10 |
C16 |
H16 |
180.9 |
180.3 |
C12 |
C10 |
C11 |
H11 |
25.0 |
188.3 |
C14 |
C13 |
C12 |
C10 |
0.3 |
0.4 |
C10 |
C12 |
C13 |
H13 |
180.3 |
180.2 |
C13 |
C12 |
C10 |
H12 |
180.0 |
179.6 |
C10 |
C11 |
C8 |
O1' |
142.9 |
300.0 |
C8 |
C11 |
C10 |
C3 |
119.6 |
240.0 |
C8 |
C11 |
C10 |
H11 |
243.5 |
120.0 |
C3 |
C11 |
C10 |
H11 |
123.9 |
240.0 |
C16 |
C10 |
C11 |
C12 |
172.3 |
180.3 |
C11 |
C10 |
C16 |
C15 |
188.4 |
179.9 |
C11 |
C10 |
C16 |
H16 |
8.4 |
0.0 |
C11 |
C10 |
C12 |
C13 |
171.7 |
179.8 |
C11 |
C10 |
C12 |
H12 |
351.7 |
0.2 |
C15 |
C16 |
C10 |
C12 |
0.9 |
0.2 |
C15 |
C16 |
C10 |
C11 |
188.4 |
179.9 |
C10 |
C16 |
C15 |
H16 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.1 |
C16 |
C15 |
C14 |
C13 |
359.7 |
359.9 |
C16 |
C15 |
C14 |
H14 |
179.7 |
180.0 |
H16 |
C16 |
C10 |
C12 |
180.9 |
180.3 |
H16 |
C16 |
C10 |
C11 |
8.4 |
0.0 |
C10 |
C16 |
H16 |
C15 |
180.0 |
179.9 |
H16 |
C16 |
C15 |
C14 |
179.7 |
180.0 |
H16 |
C16 |
C15 |
H15 |
359.7 |
359.9 |
C14 |
C15 |
C16 |
H16 |
179.7 |
180.0 |
C16 |
C15 |
C14 |
H15 |
180.0 |
179.9 |
C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
C15 |
C14 |
C13 |
C12 |
0.3 |
359.9 |
C15 |
C14 |
C13 |
H13 |
180.3 |
180.0 |
H15 |
C15 |
C16 |
H16 |
359.7 |
359.9 |
C16 |
C15 |
H15 |
C14 |
180.0 |
180.1 |
H15 |
C15 |
C14 |
C13 |
179.7 |
180.0 |
H15 |
C15 |
C14 |
H14 |
359.7 |
0.1 |
C10 |
C12 |
C13 |
C14 |
0.3 |
0.4 |
C13 |
C14 |
C15 |
H15 |
179.7 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
H13 |
180.0 |
179.8 |
C14 |
C13 |
C12 |
H12 |
180.2 |
180.1 |
H14 |
C14 |
C15 |
H15 |
359.7 |
0.1 |
C15 |
C14 |
H14 |
C13 |
180.0 |
179.9 |
H14 |
C14 |
C13 |
C12 |
180.3 |
179.8 |
H14 |
C14 |
C13 |
H13 |
0.3 |
360.0 |
C13 |
C12 |
C10 |
C11 |
171.7 |
179.8 |
C10 |
C12 |
C13 |
H12 |
180.0 |
180.4 |
C12 |
C13 |
C14 |
H14 |
180.3 |
179.8 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.2 |
H13 |
C13 |
C14 |
H14 |
0.3 |
360.0 |
C14 |
C13 |
H13 |
C12 |
180.0 |
179.8 |
H13 |
C13 |
C12 |
H12 |
0.3 |
359.9 |
H12 |
C12 |
C10 |
C11 |
351.7 |
0.2 |
C10 |
C12 |
H12 |
C13 |
180.0 |
179.6 |
H12 |
C12 |
C13 |
H13 |
0.3 |
359.9 |
H11 |
C11 |
C8 |
O1' |
26.4 |
60.0 |
C8 |
C11 |
H11 |
C3 |
237.8 |
119.9 |
C8 |
C11 |
H11 |
C10 |
111.4 |
240.0 |
C3 |
C11 |
H11 |
C10 |
233.6 |
120.0 |