PDB Chemical Component DCZ

Ideal Model

Chemical Description

Name 2'-DEOXYCYTIDINE
Formula C9 H13 N3 O4
Formal charge 0
Molecular weight 227.217 g/mol
Component type DNA OH 5 prime terminus

Chemical features

Atom count 29
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 30
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxycytidine
Systematic name (OpenEye OEToolkits) 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO)O
InChI descriptor InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1
InChIKey descriptor CKTSBUTUHBMZGZ-SHYZEUOFSA-N

Status Information

Last modified 2017-07-13
Created 2001-05-30
Release status REL
Model PDB code 1J90
Processing site RCSB