PDB Chemical Component DAT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.475 1.479
PB O2B 1.501 1.610
PB O3B 1.587 1.609
PB O3A 1.572 1.610
O2B HOB2 0.950 0.967
O3B HOB3 0.950 0.966
PA O1A 1.500 1.480
PA O2A 1.518 1.609
PA O3A 1.574 1.610
PA O5' 1.606 1.609
O2A HOA2 0.949 0.967
O5' C5' 1.426 1.429
C5' C4' 1.524 1.529
C5' H5'1 1.115 1.091
C5' H5'2 1.114 1.089
C4' O4' 1.440 1.446
C4' C3' 1.545 1.549
C4' H4' 1.114 1.090
O4' C1' 1.434 1.437
C3' O3' 1.421 1.429
C3' C2' 1.519 1.548
C3' H3' 1.115 1.090
O3' HO3' 0.951 0.968
C2' C1' 1.520 1.540
C2' H2'1 1.116 1.090
C2' H2'2 1.115 1.089
C1' N9 1.499 1.465
C1' H1' 1.115 1.090
N9 C8 1.383 1.362
N9 C4 1.380 1.372
C8 N7 1.313 1.301
C8 H8 1.103 1.080
N7 C5 1.374 1.355
C5 C6 1.441 1.404
C5 C4 1.413 1.405
C6 N6 1.329 1.384
C6 N1 1.394 1.329
N6 HN61 1.021 0.969
N6 HN62 1.020 0.970
N1 C2 1.380 1.319
C2 N3 1.355 1.317
C2 H2 1.103 1.080
N3 C4 1.379 1.329

Bond Angles for DAT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 119.1 109.4
O1B PB O3B 107.9 109.5
O1B PB O3A 106.0 109.5
O2B PB O3B 109.8 109.4
O2B PB O3A 110.3 109.5
PB O2B HOB2 119.1 106.8
O3B PB O3A 102.4 109.5
PB O3B HOB3 107.9 106.9
PB O3A PA 130.6 106.8
O1A PA O2A 119.2 109.5
O1A PA O3A 108.4 109.5
O1A PA O5' 110.3 109.4
O2A PA O3A 108.2 109.5
O2A PA O5' 108.4 109.5
PA O2A HOA2 119.2 106.8
O3A PA O5' 100.8 109.5
PA O5' C5' 123.4 106.8
O5' C5' C4' 111.0 109.5
O5' C5' H5'1 111.6 109.5
O5' C5' H5'2 111.6 109.4
C4' C5' H5'1 111.6 109.5
C4' C5' H5'2 111.6 109.5
C5' C4' O4' 109.7 110.7
C5' C4' C3' 114.8 110.7
C5' C4' H4' 104.7 110.5
H5'1 C5' H5'2 98.8 109.5
O4' C4' C3' 106.5 103.6
O4' C4' H4' 113.3 110.5
C4' O4' C1' 111.7 106.8
C3' C4' H4' 108.0 110.6
C4' C3' O3' 109.6 111.0
C4' C3' C2' 107.4 102.1
C4' C3' H3' 111.6 110.9
O4' C1' C2' 109.2 107.4
O4' C1' N9 108.3 109.9
O4' C1' H1' 112.1 109.8
O3' C3' C2' 111.7 110.9
O3' C3' H3' 107.2 110.8
C3' O3' HO3' 109.6 106.8
C2' C3' H3' 109.4 110.9
C3' C2' C1' 105.2 104.2
C3' C2' H2'1 113.8 110.4
C3' C2' H2'2 113.8 110.5
C1' C2' H2'1 113.8 110.5
C1' C2' H2'2 113.8 110.5
C2' C1' N9 113.7 109.9
C2' C1' H1' 106.3 109.9
H2'1 C2' H2'2 96.6 110.5
N9 C1' H1' 107.3 109.9
C1' N9 C8 127.2 126.2
C1' N9 C4 127.8 126.3
C8 N9 C4 105.0 107.5
N9 C8 N7 114.7 110.0
N9 C8 H8 125.0 125.0
N9 C4 C5 105.5 106.0
N9 C4 N3 127.3 134.9
N7 C8 H8 120.3 125.0
C8 N7 C5 103.9 109.5
N7 C5 C6 133.3 134.7
N7 C5 C4 110.8 107.1
C6 C5 C4 115.9 118.2
C5 C6 N6 123.4 120.8
C5 C6 N1 118.5 118.4
C5 C4 N3 127.2 119.1
N6 C6 N1 118.1 120.7
C6 N6 HN61 123.4 120.0
C6 N6 HN62 107.3 119.9
C6 N1 C2 118.6 121.2
HN61 N6 HN62 107.2 120.1
N1 C2 N3 127.9 122.5
N1 C2 H2 117.1 118.8
N3 C2 H2 115.0 118.8
C2 N3 C4 111.9 120.6

Torsion Angles for DAT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 126.0 119.9
O2B PB O1B O3A 235.1 240.0
O1B PB O2B HOB2 180.0 300.0
O3B PB O1B O3A 109.1 120.1
O1B PB O3B HOB3 180.0 180.0
O1B PB O3A PA 0.0 60.0
O1B PB O2B O3B 234.9 240.0
O1B PB O2B O3A 122.8 120.0
O3B PB O2B O3A 247.9 240.0
O2B PB O3B HOB3 48.7 60.0
O2B PB O3A PA 130.2 180.0
O1B PB O3B O2B 131.3 119.9
O1B PB O3B O3A 248.4 239.9
O2B PB O3B O3A 117.1 120.0
O3B PB O2B HOB2 305.1 60.0
O3B PB O3A PA 247.0 300.0
O1B PB O3A O2B 229.8 240.0
O1B PB O3A O3B 113.0 120.1
O2B PB O3A O3B 243.2 240.0
O3A PB O2B HOB2 57.2 180.0
O3A PB O3B HOB3 291.6 300.0
O1A PA O3A PB 328.2 300.0
O2A PA O3A PB 98.7 60.0
PB O3A PA O5' 212.3 180.0
HOB2 O2B PB O3B 305.1 60.0
HOB2 O2B PB O3A 57.2 180.0
HOB3 O3B PB O3A 291.6 300.0
PB O3A PA O1A 328.2 300.0
O2A PA O1A O3A 235.8 240.0
O2A PA O1A O5' 126.4 120.0
O1A PA O2A HOA2 180.0 180.0
O3A PA O1A O5' 250.5 240.0
O1A PA O5' C5' 152.4 60.0
PB O3A PA O2A 98.7 60.0
O1A PA O2A O3A 124.3 120.0
O1A PA O2A O5' 232.7 240.0
O3A PA O2A O5' 108.4 120.0
O2A PA O5' C5' 20.2 300.0
O1A PA O3A O2A 229.5 240.0
O1A PA O3A O5' 115.8 119.9
O2A PA O3A O5' 246.4 240.0
O3A PA O2A HOA2 55.7 60.0
O3A PA O5' C5' 266.8 180.0
O1A PA O5' O2A 132.2 120.0
O1A PA O5' O3A 245.6 240.0
O2A PA O5' O3A 113.4 120.0
O5' PA O2A HOA2 307.2 300.0
PA O5' C5' C4' 229.4 180.0
PA O5' C5' H5'1 354.6 59.9
PA O5' C5' H5'2 104.1 300.0
HOA2 O2A PA O3A 55.7 60.0
HOA2 O2A PA O5' 307.2 300.0
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 288.8 65.7
O5' C5' C4' C3' 48.6 180.0
O5' C5' C4' H4' 166.9 302.9
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 240.1 245.7
O4' C4' C5' H4' 121.9 122.8
C5' C4' O4' C1' 124.8 158.5
C3' C4' C5' H4' 241.7 237.1
C5' C4' C3' O3' 117.0 86.1
C5' C4' C3' C2' 238.5 204.4
C5' C4' C3' H3' 358.5 322.5
O5' C5' H5'1 C4' 235.1 120.1
O5' C5' H5'1 H5'2 117.5 240.1
C4' C5' H5'1 H5'2 242.4 120.0
H5'1 C5' C4' O4' 163.5 185.7
H5'1 C5' C4' C3' 283.4 300.0
H5'1 C5' C4' H4' 41.7 62.9
O5' C5' H5'2 C4' 124.9 240.0
O5' C5' H5'2 H5'1 242.5 119.9
C4' C5' H5'2 H5'1 117.5 240.0
H5'2 C5' C4' O4' 54.0 305.7
H5'2 C5' C4' C3' 173.9 60.0
H5'2 C5' C4' H4' 292.2 182.9
O4' C4' C5' H5'1 163.5 185.7
O4' C4' C5' H5'2 54.0 305.7
C5' C4' O4' C3' 124.8 118.7
C5' C4' O4' H4' 243.4 237.2
C3' C4' O4' H4' 118.6 118.5
O4' C4' C3' O3' 238.7 204.8
O4' C4' C3' C2' 0.2 323.1
O4' C4' C3' H3' 120.1 81.3
C4' O4' C1' C2' 359.9 333.7
C4' O4' C1' N9 235.6 214.1
C4' O4' C1' H1' 117.4 93.2
C3' C4' C5' H5'1 283.4 300.0
C3' C4' C5' H5'2 173.9 60.0
C5' C4' C3' O4' 238.4 241.3
C5' C4' C3' H4' 116.4 122.9
O4' C4' C3' H4' 238.0 241.6
C3' C4' O4' C1' 360.0 39.8
O3' C3' C4' C2' 238.5 241.8
O3' C3' C4' H3' 118.6 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 240.1 241.8
C4' C3' C2' C1' 359.8 20.9
C4' C3' C2' H2'1 125.0 262.2
C4' C3' C2' H2'2 234.5 139.6
H4' C4' C5' H5'1 41.7 62.9
H4' C4' C5' H5'2 292.2 182.9
C5' C4' H4' O4' 119.5 122.9
C5' C4' H4' C3' 237.2 237.1
O4' C4' H4' C3' 117.7 114.1
H4' C4' O4' C1' 241.4 281.3
H4' C4' C3' O3' 0.6 323.2
H4' C4' C3' C2' 122.1 81.5
H4' C4' C3' H3' 242.0 199.7
C1' O4' C4' C3' 360.0 39.8
C1' O4' C4' H4' 241.4 281.3
C3' C2' C1' O4' 0.2 2.0
O4' C1' C2' H2'1 234.9 120.6
O4' C1' C2' H2'2 125.5 243.2
C2' C1' O4' N9 124.3 119.6
C2' C1' O4' H1' 242.5 240.5
N9 C1' O4' H1' 118.2 121.0
O4' C1' N9 C8 15.7 28.4
O4' C1' N9 C4 195.9 208.3
O3' C3' C4' H4' 0.6 323.2
C4' C3' O3' C2' 118.8 112.8
C4' C3' O3' H3' 238.7 236.4
C2' C3' O3' H3' 119.9 123.6
O3' C3' C2' C1' 119.9 139.1
O3' C3' C2' H2'1 245.2 20.4
O3' C3' C2' H2'2 354.6 257.8
C2' C3' C4' H4' 122.1 81.5
C4' C3' C2' O3' 239.8 241.7
C4' C3' C2' H3' 121.3 118.2
O4' C1' C2' C3' 0.2 2.0
O3' C3' C2' H3' 241.5 236.4
C2' C3' O3' HO3' 61.1 61.4
C1' C2' C3' H2'1 234.7 118.7
C1' C2' C3' H2'2 125.3 241.3
C3' C2' C1' N9 121.2 121.5
C3' C2' C1' H1' 239.1 242.5
H2'1 C2' C3' H2'2 250.6 122.6
H3' C3' C4' H4' 242.0 199.7
C4' C3' H3' O3' 120.0 123.7
C4' C3' H3' C2' 241.3 247.3
O3' C3' H3' C2' 121.3 123.6
H3' C3' O3' HO3' 301.3 297.8
H3' C3' C2' C1' 238.5 262.7
H3' C3' C2' H2'1 3.7 144.0
H3' C3' C2' H2'2 113.2 21.4
HO3' O3' C3' C2' 61.1 61.4
HO3' O3' C3' H3' 301.3 297.8
O4' C1' C2' N9 239.0 240.5
O4' C1' C2' H1' 121.1 119.5
C1' C2' C3' H3' 238.5 262.7
C3' C2' C1' H2'1 125.3 241.4
C3' C2' C1' H2'2 234.7 118.7
H2'1 C2' C1' H2'2 109.4 237.4
N9 C1' C2' H1' 242.1 239.0
C2' C1' N9 C8 254.2 270.4
C2' C1' N9 C4 74.3 90.2
H2'1 C2' C3' H3' 3.7 144.0
C3' C2' H2'1 C1' 239.5 114.8
C3' C2' H2'1 H2'2 119.7 237.4
C1' C2' H2'1 H2'2 240.3 122.6
H2'1 C2' C1' N9 356.0 240.1
H2'1 C2' C1' H1' 113.9 1.1
H2'2 C2' C3' H3' 113.2 21.4
C3' C2' H2'2 C1' 120.6 245.2
C3' C2' H2'2 H2'1 240.3 122.6
C1' C2' H2'2 H2'1 119.7 237.4
H2'2 C2' C1' N9 246.6 2.8
H2'2 C2' C1' H1' 4.5 123.8
O4' C1' N9 C2' 121.6 118.0
O4' C1' N9 H1' 238.9 239.1
N9 C1' C2' H2'1 356.0 240.1
N9 C1' C2' H2'2 246.6 2.8
C2' C1' N9 H1' 117.3 121.0
C8 N9 C1' C4 179.9 180.1
C1' N9 C8 N7 180.2 180.0
C1' N9 C8 H8 0.2 359.9
C1' N9 C4 C5 179.8 180.3
C1' N9 C4 N3 360.0 0.1
O4' C1' H1' C2' 240.8 242.0
O4' C1' H1' N9 118.7 121.0
H1' C1' C2' H2'1 113.9 1.1
H1' C1' C2' H2'2 4.5 123.8
C2' C1' H1' N9 238.0 238.9
H1' C1' N9 C8 136.9 149.3
H1' C1' N9 C4 317.0 329.2
C8 N9 C1' H1' 136.9 149.3
C1' N9 C8 C4 180.1 179.9
C8 N9 C4 C5 360.0 0.2
C8 N9 C4 N3 180.1 180.0
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 360.0 359.7
C4 N9 C1' H1' 317.0 329.2
C1' N9 C4 C8 179.9 180.1
C4 N9 C8 N7 0.1 0.1
C4 N9 C8 H8 180.1 180.0
N7 C5 C4 N9 0.0 359.7
C6 C5 C4 N9 179.9 180.4
C5 C4 N9 N3 179.9 180.2
C2 N3 C4 N9 180.0 179.9
N7 C8 N9 C4 0.1 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 180.1 179.5
C8 N7 C5 C4 360.0 0.4
H8 C8 N9 C4 180.1 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.9 179.8
N9 C4 C5 N7 0.0 359.7
C5 N7 C8 H8 179.9 179.8
C6 C5 N7 C4 180.1 179.1
N7 C5 C6 N6 0.0 0.7
N7 C5 C6 N1 180.1 180.4
N7 C5 C4 N3 179.9 179.8
N9 C4 C5 C6 179.9 180.4
N7 C5 C6 C4 179.9 181.0
C6 C5 C4 N3 359.8 0.5
N6 C6 C5 N1 179.9 180.3
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.8 359.5
C5 C6 N1 C2 359.8 0.4
N9 C4 C5 N3 180.1 179.9
N7 C5 C4 C6 180.1 179.3
C4 C5 C6 N6 180.2 179.7
C4 C5 C6 N1 0.2 359.4
C2 N3 C4 C5 0.1 359.7
N6 C6 C5 C4 180.2 179.7
C5 C6 N6 N1 180.1 179.7
N6 C6 N1 C2 179.9 180.1
HN61 N6 C6 HN62 125.2 180.2
N1 C6 C5 C4 0.2 359.4
C5 C6 N1 N6 179.9 180.3
N1 C6 N6 HN61 359.9 360.0
N1 C6 N6 HN62 234.7 179.8
C6 N1 C2 N3 0.1 359.9
C6 N1 C2 H2 180.1 180.0
HN61 N6 C6 N1 359.9 360.0
C6 N6 HN61 HN62 234.8 179.8
HN62 N6 C6 N1 234.7 179.8
C6 N6 HN62 HN61 134.4 180.2
N3 C2 N1 H2 180.0 179.9
N1 C2 N3 C4 360.0 0.0
N9 C4 N3 C2 180.0 179.9
C5 C4 N3 C2 0.1 359.7
N1 C2 N3 H2 180.0 180.1
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 179.9 180.0
N9 C4 N3 C5 179.8 180.2
C4 N3 C2 H2 179.9 180.0