PDB Chemical Component DAO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C1 1.254 1.209
O2 C1 1.247 1.342
O2 HO2 0.950 0.966
C1 C2 1.563 1.506
C2 C3 1.579 1.529
C2 H21 1.115 1.090
C2 H22 1.116 1.090
C3 C4 1.573 1.529
C3 H31 1.115 1.090
C3 H32 1.114 1.090
C4 C5 1.571 1.530
C4 H41 1.115 1.090
C4 H42 1.116 1.090
C5 C6 1.555 1.529
C5 H51 1.116 1.090
C5 H52 1.114 1.090
C6 C7 1.560 1.529
C6 H61 1.115 1.090
C6 H62 1.116 1.090
C7 C8 1.556 1.529
C7 H71 1.116 1.090
C7 H72 1.115 1.090
C8 C9 1.565 1.529
C8 H81 1.115 1.090
C8 H82 1.115 1.090
C9 C10 1.557 1.529
C9 H91 1.115 1.090
C9 H92 1.116 1.090
C10 C11 1.550 1.529
C10 H101 1.114 1.090
C10 H102 1.115 1.090
C11 C12 1.517 1.529
C11 H111 1.115 1.090
C11 H112 1.114 1.090
C12 H121 1.115 1.089
C12 H122 1.115 1.090
C12 H123 1.115 1.090

Bond Angles for DAO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 O2 120.1 120.0
O1 C1 C2 119.6 119.9
C1 O2 HO2 120.1 120.1
O2 C1 C2 120.2 120.1
C1 C2 C3 114.9 109.5
C1 C2 H21 110.3 109.4
C1 C2 H22 110.3 109.4
C3 C2 H21 110.2 109.5
C3 C2 H22 110.2 109.5
C2 C3 C4 114.4 109.5
C2 C3 H31 110.4 109.5
C2 C3 H32 110.4 109.5
H21 C2 H22 100.0 109.5
C4 C3 H31 110.4 109.5
C4 C3 H32 110.4 109.5
C3 C4 C5 113.3 109.5
C3 C4 H41 110.8 109.5
C3 C4 H42 110.8 109.4
H31 C3 H32 99.9 109.5
C5 C4 H41 110.8 109.5
C5 C4 H42 110.8 109.4
C4 C5 C6 112.2 109.5
C4 C5 H51 111.2 109.5
C4 C5 H52 111.2 109.5
H41 C4 H42 99.5 109.5
C6 C5 H51 111.2 109.5
C6 C5 H52 111.2 109.5
C5 C6 C7 115.7 109.5
C5 C6 H61 110.0 109.5
C5 C6 H62 110.0 109.5
H51 C5 H52 99.2 109.5
C7 C6 H61 109.9 109.5
C7 C6 H62 109.9 109.5
C6 C7 C8 112.9 109.6
C6 C7 H71 110.9 109.5
C6 C7 H72 111.0 109.5
H61 C6 H62 100.2 109.5
C8 C7 H71 111.0 109.5
C8 C7 H72 111.0 109.5
C7 C8 C9 114.5 109.5
C7 C8 H81 110.3 109.4
C7 C8 H82 110.3 109.4
H71 C7 H72 99.3 109.5
C9 C8 H81 110.4 109.5
C9 C8 H82 110.4 109.5
C8 C9 C10 111.2 109.5
C8 C9 H91 111.6 109.5
C8 C9 H92 111.6 109.5
H81 C8 H82 99.9 109.5
C10 C9 H91 111.6 109.5
C10 C9 H92 111.6 109.5
C9 C10 C11 115.8 109.6
C9 C10 H101 109.9 109.5
C9 C10 H102 109.9 109.5
H91 C9 H92 98.7 109.5
C11 C10 H101 109.9 109.5
C11 C10 H102 109.9 109.5
C10 C11 C12 114.8 109.6
C10 C11 H111 110.2 109.5
C10 C11 H112 110.3 109.5
H101 C10 H102 100.4 109.5
C12 C11 H111 110.2 109.5
C12 C11 H112 110.2 109.5
C11 C12 H121 114.8 109.5
C11 C12 H122 110.3 109.4
C11 C12 H123 110.2 109.4
H111 C11 H112 100.1 109.5
H121 C12 H122 110.3 109.4
H121 C12 H123 110.3 109.4
H122 C12 H123 100.0 109.5

Torsion Angles for DAO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 O2 HO2 180.0 -0.0
O2 C1 O1 C2 182.6 180.0
O1 C1 C2 C3 156.2 -0.0
O1 C1 C2 H21 281.5 240.0
O1 C1 C2 H22 31.0 120.0
O1 C1 O2 C2 177.3 180.0
O2 C1 C2 C3 333.6 180.0
O2 C1 C2 H21 98.8 60.0
O2 C1 C2 H22 208.3 300.0
HO2 O2 C1 C2 2.6 180.0
O1 C1 C2 O2 182.6 180.0
C2 C1 O2 HO2 2.6 180.0
C3 C2 C1 H21 234.7 120.0
C3 C2 C1 H22 125.3 240.0
C1 C2 C3 C4 144.4 180.0
C1 C2 C3 H31 269.6 60.0
C1 C2 C3 H32 19.2 300.0
H21 C2 C1 H22 250.5 120.0
C1 C2 C3 H21 125.3 240.0
C1 C2 C3 H22 234.7 120.0
H21 C2 C3 H22 109.4 240.0
C4 C3 C2 H31 234.8 120.0
C4 C3 C2 H32 125.2 240.0
C2 C3 C4 C5 197.4 180.0
C2 C3 C4 H41 322.6 60.0
C2 C3 C4 H42 72.1 300.0
H31 C3 C2 H32 250.4 120.0
C1 C2 H21 C3 232.1 120.1
C1 C2 H21 H22 116.1 240.1
C3 C2 H21 H22 244.0 120.0
H21 C2 C3 C4 19.1 300.0
H21 C2 C3 H31 144.3 180.0
H21 C2 C3 H32 253.9 60.0
C1 C2 H22 C3 127.9 239.9
C1 C2 H22 H21 243.9 119.9
C3 C2 H22 H21 116.0 240.0
H22 C2 C3 C4 269.7 60.0
H22 C2 C3 H31 34.9 300.0
H22 C2 C3 H32 144.5 180.0
C4 C3 C2 H21 19.1 300.0
C4 C3 C2 H22 269.7 60.0
C2 C3 C4 H31 125.2 240.0
C2 C3 C4 H32 234.7 120.0
H31 C3 C4 H32 109.5 240.0
C5 C4 C3 H41 234.7 120.0
C5 C4 C3 H42 125.2 240.0
C3 C4 C5 C6 134.5 180.0
C3 C4 C5 H51 259.7 60.0
C3 C4 C5 H52 9.2 300.0
H41 C4 C3 H42 250.5 120.0
H31 C3 C2 H21 144.3 180.0
H31 C3 C2 H22 34.9 300.0
C2 C3 H31 C4 232.6 120.1
C2 C3 H31 H32 116.3 240.0
C4 C3 H31 H32 243.8 120.0
H31 C3 C4 C5 72.1 300.0
H31 C3 C4 H41 197.4 180.0
H31 C3 C4 H42 306.9 60.0
H32 C3 C2 H21 253.9 60.0
H32 C3 C2 H22 144.5 180.0
C2 C3 H32 C4 127.5 239.9
C2 C3 H32 H31 243.7 120.0
C4 C3 H32 H31 116.2 240.0
H32 C3 C4 C5 322.6 60.0
H32 C3 C4 H41 87.9 300.0
H32 C3 C4 H42 197.4 180.0
C5 C4 C3 H31 72.1 300.0
C5 C4 C3 H32 322.6 60.0
C3 C4 C5 H41 125.3 240.0
C3 C4 C5 H42 234.7 120.0
H41 C4 C5 H42 109.4 240.0
C6 C5 C4 H51 234.8 120.0
C6 C5 C4 H52 125.3 240.0
C4 C5 C6 C7 184.4 180.0
C4 C5 C6 H61 309.6 60.0
C4 C5 C6 H62 59.1 300.0
H51 C5 C4 H52 250.5 120.0
H41 C4 C3 H31 197.4 180.0
H41 C4 C3 H32 87.9 300.0
C3 C4 H41 C5 233.3 120.1
C3 C4 H41 H42 116.7 240.0
C5 C4 H41 H42 243.4 120.0
H41 C4 C5 C6 9.2 300.0
H41 C4 C5 H51 134.4 180.0
H41 C4 C5 H52 243.9 60.0
H42 C4 C3 H31 306.9 60.0
H42 C4 C3 H32 197.4 180.0
C3 C4 H42 C5 126.7 240.0
C3 C4 H42 H41 243.3 120.0
C5 C4 H42 H41 116.6 240.0
H42 C4 C5 C6 259.8 60.0
H42 C4 C5 H51 25.0 300.0
H42 C4 C5 H52 134.5 180.0
C6 C5 C4 H41 9.2 300.0
C6 C5 C4 H42 259.8 60.0
C4 C5 C6 H51 125.2 240.0
C4 C5 C6 H52 234.7 120.0
H51 C5 C6 H52 109.5 240.0
C7 C6 C5 H61 234.7 120.0
C7 C6 C5 H62 125.3 240.0
C5 C6 C7 C8 106.3 180.0
C5 C6 C7 H71 231.6 60.0
C5 C6 C7 H72 341.0 300.0
H61 C6 C5 H62 250.6 120.0
H51 C5 C4 H41 134.4 180.0
H51 C5 C4 H42 25.0 300.0
C4 C5 H51 C6 234.2 120.0
C4 C5 H51 H52 117.1 240.0
C6 C5 H51 H52 242.9 120.0
H51 C5 C6 C7 59.1 300.0
H51 C5 C6 H61 184.4 180.0
H51 C5 C6 H62 293.9 60.0
H52 C5 C4 H41 243.9 60.0
H52 C5 C4 H42 134.5 180.0
C4 C5 H52 C6 125.9 240.0
C4 C5 H52 H51 242.9 120.0
C6 C5 H52 H51 117.1 240.0
H52 C5 C6 C7 309.7 60.0
H52 C5 C6 H61 74.9 300.0
H52 C5 C6 H62 184.4 180.0
C7 C6 C5 H51 59.1 300.0
C7 C6 C5 H52 309.7 60.0
C5 C6 C7 H61 125.3 240.0
C5 C6 C7 H62 234.7 120.0
H61 C6 C7 H62 109.4 240.0
C8 C7 C6 H71 234.7 120.0
C8 C7 C6 H72 125.3 240.0
C6 C7 C8 C9 127.5 180.0
C6 C7 C8 H81 252.7 60.0
C6 C7 C8 H82 2.2 300.0
H71 C7 C6 H72 250.6 120.0
H61 C6 C5 H51 184.4 180.0
H61 C6 C5 H52 74.9 300.0
C5 C6 H61 C7 231.5 120.1
C5 C6 H61 H62 115.8 240.0
C7 C6 H61 H62 244.3 120.0
H61 C6 C7 C8 341.0 300.0
H61 C6 C7 H71 106.3 180.0
H61 C6 C7 H72 215.7 60.0
H62 C6 C5 H51 293.9 60.0
H62 C6 C5 H52 184.4 180.0
C5 C6 H62 C7 128.5 239.9
C5 C6 H62 H61 244.2 120.0
C7 C6 H62 H61 115.7 240.0
H62 C6 C7 C8 231.6 60.0
H62 C6 C7 H71 356.8 300.0
H62 C6 C7 H72 106.3 180.0
C8 C7 C6 H61 341.0 300.0
C8 C7 C6 H62 231.6 60.0
C6 C7 C8 H71 125.2 240.0
C6 C7 C8 H72 234.7 120.0
H71 C7 C8 H72 109.5 240.0
C9 C8 C7 H81 234.7 120.0
C9 C8 C7 H82 125.2 240.0
C7 C8 C9 C10 177.8 180.0
C7 C8 C9 H91 303.1 60.0
C7 C8 C9 H92 52.5 300.0
H81 C8 C7 H82 250.5 120.1
H71 C7 C6 H61 106.3 180.0
H71 C7 C6 H62 356.8 300.0
C6 C7 H71 C8 233.7 120.1
C6 C7 H71 H72 116.8 240.0
C8 C7 H71 H72 243.1 120.0
H71 C7 C8 C9 2.2 300.0
H71 C7 C8 H81 127.5 180.0
H71 C7 C8 H82 237.0 60.0
H72 C7 C6 H61 215.7 60.0
H72 C7 C6 H62 106.3 180.0
C6 C7 H72 C8 126.4 239.9
C6 C7 H72 H71 243.2 120.0
C8 C7 H72 H71 116.9 240.0
H72 C7 C8 C9 252.8 60.0
H72 C7 C8 H81 18.0 300.0
H72 C7 C8 H82 127.5 180.0
C9 C8 C7 H71 2.2 300.0
C9 C8 C7 H72 252.8 60.0
C7 C8 C9 H81 125.3 240.0
C7 C8 C9 H82 234.8 120.0
H81 C8 C9 H82 109.5 239.9
C10 C9 C8 H91 234.7 120.0
C10 C9 C8 H92 125.3 240.0
C8 C9 C10 C11 192.4 180.0
C8 C9 C10 H101 317.6 60.0
C8 C9 C10 H102 67.2 300.0
H91 C9 C8 H92 250.6 120.0
H81 C8 C7 H71 127.5 180.0
H81 C8 C7 H72 18.0 300.0
C7 C8 H81 C9 232.4 120.0
C7 C8 H81 H82 116.2 240.0
C9 C8 H81 H82 243.8 120.0
H81 C8 C9 C10 52.5 300.0
H81 C8 C9 H91 177.8 180.0
H81 C8 C9 H92 287.2 60.0
H82 C8 C7 H71 237.0 60.0
H82 C8 C7 H72 127.5 180.0
C7 C8 H82 C9 127.6 240.0
C7 C8 H82 H81 243.8 120.0
C9 C8 H82 H81 116.2 240.0
H82 C8 C9 C10 303.0 60.0
H82 C8 C9 H91 68.3 300.0
H82 C8 C9 H92 177.7 180.0
C10 C9 C8 H81 52.5 300.0
C10 C9 C8 H82 303.0 60.0
C8 C9 C10 H91 125.3 240.0
C8 C9 C10 H92 234.7 120.0
H91 C9 C10 H92 109.4 240.0
C11 C10 C9 H101 234.7 120.0
C11 C10 C9 H102 125.2 240.0
C9 C10 C11 C12 289.3 180.0
C9 C10 C11 H111 54.5 60.0
C9 C10 C11 H112 164.1 300.0
H101 C10 C9 H102 250.5 120.0
H91 C9 C8 H81 177.8 180.0
H91 C9 C8 H82 68.3 300.0
C8 C9 H91 C10 234.9 120.0
C8 C9 H91 H92 117.4 240.0
C10 C9 H91 H92 242.5 120.0
H91 C9 C10 C11 67.1 300.0
H91 C9 C10 H101 192.3 180.0
H91 C9 C10 H102 301.9 60.0
H92 C9 C8 H81 287.2 60.0
H92 C9 C8 H82 177.7 180.0
C8 C9 H92 C10 125.1 240.0
C8 C9 H92 H91 242.5 120.0
C10 C9 H92 H91 117.5 240.0
H92 C9 C10 C11 317.7 60.0
H92 C9 C10 H101 82.9 300.0
H92 C9 C10 H102 192.4 180.0
C11 C10 C9 H91 67.1 300.0
C11 C10 C9 H92 317.7 60.0
C9 C10 C11 H101 125.3 240.0
C9 C10 C11 H102 234.8 120.0
H101 C10 C11 H102 109.5 240.0
C12 C11 C10 H111 234.8 120.0
C12 C11 C10 H112 125.2 240.0
C10 C11 C12 H121 179.9 180.0
C10 C11 C12 H122 305.3 300.0
C10 C11 C12 H123 54.8 60.0
H111 C11 C10 H112 250.4 120.0
H101 C10 C9 H91 192.3 180.0
H101 C10 C9 H92 82.9 300.0
C9 C10 H101 C11 231.4 120.1
C9 C10 H101 H102 115.7 240.0
C11 C10 H101 H102 244.3 120.0
H101 C10 C11 C12 164.0 300.0
H101 C10 C11 H111 289.2 180.0
H101 C10 C11 H112 38.8 60.0
H102 C10 C9 H91 301.9 60.0
H102 C10 C9 H92 192.4 180.0
C9 C10 H102 C11 128.5 239.9
C9 C10 H102 H101 244.3 120.0
C11 C10 H102 H101 115.7 240.0
H102 C10 C11 C12 54.5 60.0
H102 C10 C11 H111 179.7 300.0
H102 C10 C11 H112 289.3 180.0
C12 C11 C10 H101 164.0 300.0
C12 C11 C10 H102 54.5 60.0
C10 C11 C12 H111 125.2 240.0
C10 C11 C12 H112 234.7 120.0
H111 C11 C12 H112 109.5 240.0
H121 C12 C11 H122 234.7 240.0
H121 C12 C11 H123 125.2 120.0
H122 C12 C11 H123 250.5 239.9
H111 C11 C10 H101 289.2 180.0
H111 C11 C10 H102 179.7 300.0
C10 C11 H111 C12 232.2 120.1
C10 C11 H111 H112 116.1 240.0
C12 C11 H111 H112 243.9 120.0
H111 C11 C12 H121 54.7 300.0
H111 C11 C12 H122 180.1 60.0
H111 C11 C12 H123 289.6 180.0
H112 C11 C10 H101 38.8 60.0
H112 C11 C10 H102 289.3 180.0
C10 C11 H112 C12 127.8 239.9
C10 C11 H112 H111 243.9 120.0
C12 C11 H112 H111 116.1 240.0
H112 C11 C12 H121 305.2 60.0
H112 C11 C12 H122 70.5 180.0
H112 C11 C12 H123 180.0 300.0
H121 C12 C11 H111 54.7 300.0
H121 C12 C11 H112 305.2 60.0
C11 C12 H121 H122 125.3 120.0
C11 C12 H121 H123 234.8 240.0
H122 C12 H121 H123 109.5 120.1
H122 C12 C11 H111 180.1 60.0
H122 C12 C11 H112 70.5 180.0
C11 C12 H122 H121 232.2 240.0
C11 C12 H122 H123 116.0 120.0
H121 C12 H122 H123 243.9 240.0
H123 C12 C11 H111 289.6 180.0
H123 C12 C11 H112 180.0 300.0
C11 C12 H123 H121 127.7 120.0
C11 C12 H123 H122 243.9 240.0
H121 C12 H123 H122 116.2 120.0