PDB Chemical Component CTP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CTP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.363 1.345
N1 C6 1.350 1.363
N1 C1' 1.494 1.464
C2 N3 1.321 1.333
C2 O2 1.247 1.219
N3 C4 1.342 1.327
C4 C5 1.384 1.409
C4 N4 1.336 1.376
C5 C6 1.383 1.355
C5 H5 1.104 1.079
C6 H6 1.103 1.080
N4 HN41 1.020 0.969
N4 HN42 1.019 0.969
C1' C2' 1.520 1.544
C1' O4' 1.422 1.445
C1' H1' 1.115 1.090
C2' O2' 1.418 1.429
C2' C3' 1.501 1.547
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.967
C3' C4' 1.526 1.544
C3' O3' 1.432 1.429
C3' H3' 1.116 1.090
C4' O4' 1.430 1.445
C4' C5' 1.504 1.530
C4' H4' 1.114 1.090
O3' HO3' 0.950 0.967
C5' O5' 1.403 1.428
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.090
O5' PA 1.646 1.610
PA O1A 1.553 1.480
PA O2A 1.542 1.610
PA O3A 1.667 1.609
O2A HOA2 0.951 0.967
O3A PB 1.652 1.610
PB O1B 1.570 1.479
PB O2B 1.564 1.610
PB O3B 1.667 1.610
O2B HOB2 0.950 0.966
O3B PG 1.655 1.610
PG O1G 1.572 1.479
PG O2G 1.572 1.610
PG O3G 1.570 1.610
O2G HOG2 0.951 0.967
O3G HOG3 0.951 0.966

Bond Angles for CTP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 116.1 120.4
C2 N1 C1' 120.9 119.9
N1 C2 N3 123.5 121.1
N1 C2 O2 121.9 119.5
C6 N1 C1' 122.9 119.8
N1 C6 C5 122.9 119.3
N1 C6 H6 117.3 120.4
N1 C1' C2' 110.1 110.4
N1 C1' O4' 111.6 110.4
N1 C1' H1' 106.0 110.4
N3 C2 O2 114.5 119.5
C2 N3 C4 120.1 120.7
N3 C4 C5 120.3 119.7
N3 C4 N4 117.4 120.1
C5 C4 N4 122.3 120.2
C4 C5 C6 117.0 118.9
C4 C5 H5 121.6 120.5
C4 N4 HN41 117.3 120.0
C4 N4 HN42 109.3 120.0
C6 C5 H5 121.4 120.5
C5 C6 H6 119.8 120.3
HN41 N4 HN42 109.4 120.0
C2' C1' O4' 104.0 104.9
C2' C1' H1' 113.4 110.4
C1' C2' O2' 108.3 110.8
C1' C2' C3' 103.7 104.0
C1' C2' H2' 115.5 110.4
O4' C1' H1' 111.9 110.4
C1' O4' C4' 108.4 105.2
O2' C2' C3' 113.7 110.5
O2' C2' H2' 105.7 110.5
C2' O2' HO2' 108.3 106.8
C3' C2' H2' 110.2 110.5
C2' C3' C4' 104.7 104.1
C2' C3' O3' 113.5 110.5
C2' C3' H3' 108.7 110.6
C4' C3' O3' 105.0 110.5
C4' C3' H3' 116.7 110.5
C3' C4' O4' 106.7 104.8
C3' C4' C5' 105.6 110.5
C3' C4' H4' 114.6 110.4
O3' C3' H3' 108.5 110.5
C3' O3' HO3' 113.4 106.7
O4' C4' C5' 112.0 110.3
O4' C4' H4' 108.5 110.4
C5' C4' H4' 109.5 110.3
C4' C5' O5' 109.3 109.5
C4' C5' H5'1 112.3 109.4
C4' C5' H5'2 112.3 109.4
O5' C5' H5'1 112.3 109.5
O5' C5' H5'2 112.3 109.5
C5' O5' PA 125.0 106.8
H5'1 C5' H5'2 98.1 109.5
O5' PA O1A 108.1 109.4
O5' PA O2A 104.4 109.5
O5' PA O3A 107.3 109.6
O1A PA O2A 109.8 109.4
O1A PA O3A 112.7 109.5
O2A PA O3A 114.0 109.4
PA O2A HOA2 104.4 106.8
PA O3A PB 119.6 106.8
O3A PB O1B 105.9 109.5
O3A PB O2B 110.2 109.5
O3A PB O3B 110.4 109.5
O1B PB O2B 110.6 109.5
O1B PB O3B 106.5 109.5
O2B PB O3B 113.0 109.4
PB O2B HOB2 110.2 106.9
PB O3B PG 120.7 106.8
O3B PG O1G 107.1 109.5
O3B PG O2G 105.8 109.5
O3B PG O3G 109.3 109.4
O1G PG O2G 111.0 109.5
O1G PG O3G 110.1 109.5
O2G PG O3G 113.3 109.4
PG O2G HOG2 105.9 106.8
PG O3G HOG3 109.3 106.9

Torsion Angles for CTP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 177.1 180.0
C2 N1 C6 C5 359.2 359.7
C2 N1 C6 H6 179.2 180.0
C2 N1 C1' C2' 105.2 301.5
C2 N1 C1' O4' 220.1 57.0
C2 N1 C1' H1' 342.2 179.3
N3 C2 N1 O2 179.9 180.0
N1 C2 N3 C4 360.0 0.0
C2 N1 C6 C1' 182.9 180.0
C6 N1 C2 N3 0.7 360.0
C6 N1 C2 O2 180.8 180.0
C6 N1 C1' C2' 288.3 121.6
C6 N1 C1' O4' 43.2 237.0
C6 N1 C1' H1' 165.3 359.3
C4 C5 C6 N1 0.2 0.5
N1 C6 C5 H5 180.2 180.0
C5 C6 N1 H6 180.0 179.7
C2 N1 C1' C6 176.9 180.0
C1' N1 C2 N3 183.6 180.0
C1' N1 C2 O2 3.7 0.0
C1' N1 C6 C5 176.3 179.7
C1' N1 C6 H6 356.3 359.9
C2' C1' N1 O4' 245.1 244.5
C2' C1' N1 H1' 123.0 122.3
N1 C1' C2' O2' 275.0 261.5
N1 C1' C2' C3' 154.0 142.7
N1 C1' C2' H2' 33.3 24.2
O4' C1' N1 H1' 237.9 237.7
N1 C1' O4' C4' 206.7 200.7
N3 C2 N1 C6 0.7 360.0
N3 C2 N1 C1' 183.6 180.0
N1 C2 N3 O2 180.1 180.0
C2 N3 C4 C5 359.4 0.2
C2 N3 C4 N4 179.5 179.9
O2 C2 N1 C6 180.8 180.0
O2 C2 N1 C1' 3.7 0.0
N1 C2 O2 N3 179.9 180.0
O2 C2 N3 C4 179.8 180.0
C4 N3 C2 O2 179.8 180.0
C5 C4 N3 N4 179.9 180.3
N3 C4 C5 C6 0.5 359.5
N3 C4 C5 H5 180.5 180.0
N3 C4 N4 HN41 180.1 0.0
N3 C4 N4 HN42 54.7 179.7
N1 C6 C5 C4 0.2 0.5
N3 C4 C5 N4 180.1 179.7
C5 C4 N4 HN41 0.2 179.7
C5 C4 N4 HN42 234.9 359.4
C6 C5 C4 H5 180.0 179.5
C4 C5 C6 H6 180.2 180.3
N3 C4 N4 C5 179.9 180.3
N4 C4 C5 C6 180.4 179.8
N4 C4 C5 H5 0.4 0.3
HN41 N4 C4 HN42 125.3 180.3
C5 C6 N1 C1' 176.3 179.7
N1 C6 C5 H6 180.0 180.3
C6 C5 C4 N4 180.4 179.8
C4 C5 C6 H5 180.0 180.5
H5 C5 C4 N4 0.4 0.3
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 0.2 359.7
H6 C6 N1 C1' 356.3 359.9
N1 C6 H6 C5 180.0 179.7
H6 C6 C5 H5 0.2 359.7
C4 N4 HN41 HN42 234.7 179.7
C4 N4 HN42 HN41 129.8 180.3
N1 C1' C2' O4' 119.7 118.9
N1 C1' C2' H1' 241.4 237.8
O4' C1' C2' H1' 121.8 118.9
C2' C1' O4' C4' 325.4 319.5
O2' C2' C1' C3' 121.1 118.8
O2' C2' C1' H2' 241.7 237.3
C1' C2' O2' HO2' 180.0 183.8
C3' C2' C1' H2' 120.6 118.5
C1' C2' C3' C4' 338.5 0.2
C1' C2' C3' O3' 92.4 118.8
C1' C2' C3' H3' 213.1 241.4
N1 C1' O4' C2' 241.4 241.1
N1 C1' O4' H1' 118.6 122.3
C2' C1' O4' H1' 237.3 241.1
O4' C1' C2' O2' 155.4 142.6
O4' C1' C2' C3' 34.3 23.9
O4' C1' C2' H2' 273.7 265.3
C3' C4' O4' C1' 20.9 40.6
C1' O4' C4' C5' 136.0 159.5
C1' O4' C4' H4' 257.0 281.7
N1 C1' H1' C2' 120.9 122.3
N1 C1' H1' O4' 238.1 237.7
C2' C1' H1' O4' 117.2 115.5
H1' C1' C2' O2' 33.6 23.7
H1' C1' C2' C3' 272.6 265.0
H1' C1' C2' H2' 151.9 146.4
H1' C1' O4' C4' 88.1 78.4
O2' C2' C1' O4' 155.4 142.6
O2' C2' C1' H1' 33.6 23.7
C1' C2' O2' C3' 245.3 245.3
C1' C2' O2' H2' 124.3 122.6
C3' C2' O2' H2' 239.0 237.4
O2' C2' C3' C4' 221.1 241.2
O2' C2' C3' O3' 335.0 359.8
O2' C2' C3' H3' 95.7 122.5
C3' C2' C1' O4' 34.3 23.9
C3' C2' C1' H1' 272.6 265.0
C1' C2' C3' O2' 117.4 119.0
C1' C2' C3' H2' 235.9 241.6
O2' C2' C3' H2' 118.5 122.6
C3' C2' O2' HO2' 294.6 298.6
C4' C3' C2' O3' 246.1 241.4
C4' C3' C2' H3' 125.4 118.7
C2' C3' C4' O4' 1.6 335.9
C2' C3' C4' C5' 242.2 217.0
C2' C3' C4' H4' 121.7 94.7
O3' C3' C2' H3' 239.3 237.3
C2' C3' O3' HO3' 179.9 65.4
H2' C2' C1' O4' 273.7 265.3
H2' C2' C1' H1' 151.9 146.4
C1' C2' H2' O2' 240.3 237.1
C1' C2' H2' C3' 117.0 114.5
O2' C2' H2' C3' 236.8 237.4
H2' C2' O2' HO2' 55.7 61.2
H2' C2' C3' C4' 102.6 118.6
H2' C2' C3' O3' 216.5 237.2
H2' C2' C3' H3' 337.2 359.9
HO2' O2' C2' C3' 294.6 298.6
HO2' O2' C2' H2' 55.7 61.2
C1' O4' C4' C3' 20.9 40.6
C4' C3' C2' H2' 102.6 118.6
C2' C3' C4' O3' 119.7 118.7
C2' C3' C4' H3' 239.8 241.2
O3' C3' C4' H3' 120.1 122.6
C4' C3' O3' HO3' 293.6 180.0
O4' C4' C3' C5' 119.3 118.8
O4' C4' C3' H4' 239.9 241.1
C5' C4' C3' H4' 120.5 122.3
C3' C4' C5' O5' 115.2 176.9
C3' C4' C5' H5'1 240.5 296.9
C3' C4' C5' H5'2 350.0 56.9
O3' C3' C2' H2' 216.5 237.2
C2' C3' O3' C4' 246.3 245.3
C2' C3' O3' H3' 120.9 122.7
C4' C3' O3' H3' 234.6 237.4
O3' C3' C4' O4' 241.8 217.2
O3' C3' C4' C5' 122.5 98.4
O3' C3' C4' H4' 2.0 336.1
H3' C3' C2' H2' 337.2 359.9
C2' C3' H3' C4' 118.0 114.7
C2' C3' H3' O3' 236.2 237.3
C4' C3' H3' O3' 118.2 122.6
H3' C3' C4' O4' 121.7 94.6
H3' C3' C4' C5' 2.4 335.8
H3' C3' C4' H4' 241.9 213.5
H3' C3' O3' HO3' 59.1 302.6
C4' O4' C1' H1' 88.1 78.4
O4' C4' C3' O3' 241.8 217.2
O4' C4' C3' H3' 121.7 94.6
C3' C4' O4' C5' 244.9 241.0
C3' C4' O4' H4' 124.0 118.9
C5' C4' O4' H4' 239.0 237.8
O4' C4' C5' O5' 359.5 61.4
O4' C4' C5' H5'1 124.8 181.5
O4' C4' C5' H5'2 234.2 301.4
C5' C4' C3' O3' 122.5 98.4
C5' C4' C3' H3' 2.4 335.8
C3' C4' C5' O4' 115.7 115.4
C3' C4' C5' H4' 236.2 237.6
O4' C4' C5' H4' 120.4 122.2
O5' C5' C4' H5'1 234.7 240.0
O5' C5' C4' H5'2 125.3 120.0
C4' C5' O5' PA 230.0 180.0
H5'1 C5' C4' H5'2 250.5 240.0
H4' C4' C3' O3' 2.0 336.1
H4' C4' C3' H3' 241.9 213.5
C3' C4' H4' O4' 240.9 244.6
C3' C4' H4' C5' 118.4 122.4
O4' C4' H4' C5' 237.5 237.8
H4' C4' C5' O5' 239.1 299.2
H4' C4' C5' H5'1 4.3 59.3
H4' C4' C5' H5'2 113.8 179.3
HO3' O3' C3' H3' 59.1 302.6
O5' C5' C4' H4' 239.1 299.2
C4' C5' O5' H5'1 125.3 120.0
C4' C5' O5' H5'2 234.7 240.0
H5'1 C5' O5' H5'2 109.4 120.0
C5' O5' PA O1A 21.8 60.0
C5' O5' PA O2A 265.0 300.1
C5' O5' PA O3A 143.7 180.0
H5'1 C5' C4' H4' 4.3 59.3
C4' C5' H5'1 O5' 236.4 240.0
C4' C5' H5'1 H5'2 118.2 120.0
O5' C5' H5'1 H5'2 241.8 240.0
H5'1 C5' O5' PA 104.6 60.0
H5'2 C5' C4' H4' 113.8 179.3
C4' C5' H5'2 O5' 123.6 120.0
C4' C5' H5'2 H5'1 241.8 240.0
O5' C5' H5'2 H5'1 118.2 120.0
H5'2 C5' O5' PA 355.2 300.0
PA O5' C5' H5'1 104.6 60.0
PA O5' C5' H5'2 355.2 300.0
O1A PA O5' O2A 116.8 119.9
O1A PA O5' O3A 238.2 240.0
O2A PA O5' O3A 121.4 120.0
O5' PA O2A HOA2 180.0 300.0
O5' PA O3A PB 216.6 180.0
O5' PA O1A O2A 246.7 240.1
O5' PA O1A O3A 118.4 120.1
O2A PA O1A O3A 231.7 240.0
O1A PA O2A HOA2 64.3 180.0
O1A PA O3A PB 335.5 300.0
O5' PA O2A O1A 115.6 119.9
O5' PA O2A O3A 243.2 239.9
O1A PA O2A O3A 127.5 120.0
O2A PA O3A PB 101.5 60.0
O5' PA O3A O1A 241.1 240.0
O5' PA O3A O2A 115.1 120.0
O1A PA O3A O2A 234.0 240.0
O3A PA O2A HOA2 296.8 60.0
PA O3A PB O1B 183.1 60.0
PA O3A PB O2B 63.4 299.9
PA O3A PB O3B 298.0 180.0
HOA2 O2A PA O3A 296.8 60.0
O1B PB O3A O2B 119.6 120.0
O1B PB O3A O3B 245.1 240.0
O2B PB O3A O3B 125.5 119.9
O3A PB O2B HOB2 180.0 300.0
O3A PB O3B PG 156.9 180.0
O3A PB O1B O2B 240.6 240.0
O3A PB O1B O3B 117.5 120.0
O2B PB O1B O3B 236.9 240.0
O1B PB O2B HOB2 63.2 180.0
O1B PB O3B PG 271.4 300.0
O3A PB O2B O1B 116.8 120.0
O3A PB O2B O3B 236.0 240.0
O1B PB O2B O3B 119.2 120.0
O2B PB O3B PG 33.0 60.0
O3A PB O3B O1B 245.4 240.0
O3A PB O3B O2B 123.9 120.0
O1B PB O3B O2B 238.5 240.0
O3B PB O2B HOB2 304.0 60.0
PB O3B PG O1G 297.2 60.0
PB O3B PG O2G 178.7 180.0
PB O3B PG O3G 56.4 299.9
HOB2 O2B PB O3B 304.0 60.0
O1G PG O3B O2G 118.5 240.0
O1G PG O3B O3G 240.8 120.1
O2G PG O3B O3G 122.3 240.1
O3B PG O2G HOG2 180.0 180.0
O3B PG O3G HOG3 180.0 300.0
O3B PG O1G O2G 244.9 120.0
O3B PG O1G O3G 118.7 240.0
O2G PG O1G O3G 233.8 120.0
O1G PG O2G HOG2 64.1 300.0
O1G PG O3G HOG3 297.3 180.0
O3B PG O2G O1G 115.8 240.0
O3B PG O2G O3G 240.3 119.9
O1G PG O2G O3G 124.5 239.9
O2G PG O3G HOG3 62.3 60.0
O3B PG O3G O1G 242.7 120.0
O3B PG O3G O2G 117.7 240.1
O1G PG O3G O2G 235.1 120.1
O3G PG O2G HOG2 299.7 60.1
HOG2 O2G PG O3G 299.7 60.1